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Items: 1 to 50 of 83

1.

Improved Algal Toxicity Test System for Robust Omics-Driven Mode-of-Action Discovery in Chlamydomonas reinhardtii.

Schade S, Butler E, Gutsell S, Hodges G, Colbourne JK, Viant MR.

Metabolites. 2019 May 10;9(5). pii: E94. doi: 10.3390/metabo9050094.

2.

Transgenerational response to early spring warming in Daphnia.

Toyota K, Cambronero Cuenca M, Dhandapani V, Suppa A, Rossi V, Colbourne JK, Orsini L.

Sci Rep. 2019 Mar 14;9(1):4449. doi: 10.1038/s41598-019-40946-3.

3.

Mixtures of Aluminum and Indium Induce More than Additive Phenotypic and Toxicogenomic Responses in Daphnia magna.

Brun NR, Fields PD, Horsfield S, Mirbahai L, Ebert D, Colbourne JK, Fent K.

Environ Sci Technol. 2019 Feb 5;53(3):1639-1649. doi: 10.1021/acs.est.8b05457. Epub 2019 Jan 17.

PMID:
30608651
4.

Mitotic activity patterns and cytoskeletal changes throughout the progression of diapause developmental program in Daphnia.

Chen L, Barnett RE, Horstmann M, Bamberger V, Heberle L, Krebs N, Colbourne JK, Gómez R, Weiss LC.

BMC Cell Biol. 2018 Dec 29;19(1):30. doi: 10.1186/s12860-018-0181-0.

5.

Acidity promotes degradation of multi-species environmental DNA in lotic mesocosms.

Seymour M, Durance I, Cosby BJ, Ransom-Jones E, Deiner K, Ormerod SJ, Colbourne JK, Wilgar G, Carvalho GR, de Bruyn M, Edwards F, Emmett BA, Bik HM, Creer S.

Commun Biol. 2018 Jan 22;1:4. doi: 10.1038/s42003-017-0005-3. eCollection 2018.

6.

Pattern of DNA Methylation in Daphnia: Evolutionary Perspective.

Kvist J, Gonçalves Athanàsio C, Shams Solari O, Brown JB, Colbourne JK, Pfrender ME, Mirbahai L.

Genome Biol Evol. 2018 Aug 1;10(8):1988-2007. doi: 10.1093/gbe/evy155.

7.

Arsenic Reduces Gene Expression Response to Changing Salinity in Killifish.

Hampton TH, Jackson C, Jung D, Chen CY, Glaholt SP, Stanton BA, Colbourne JK, Shaw JR.

Environ Sci Technol. 2018 Aug 7;52(15):8811-8821. doi: 10.1021/acs.est.8b01550. Epub 2018 Jul 20.

8.

Scan, extract, wrap, compute-a 3D method to analyse morphological shape differences.

Horstmann M, Topham AT, Stamm P, Kruppert S, Colbourne JK, Tollrian R, Weiss LC.

PeerJ. 2018 Jun 8;6:e4861. doi: 10.7717/peerj.4861. eCollection 2018.

9.

The transcriptomic and proteomic responses of Daphnia pulex to changes in temperature and food supply comprise environment-specific and clone-specific elements.

Becker D, Reydelet Y, Lopez JA, Jackson C, Colbourne JK, Hawat S, Hippler M, Zeis B, Paul RJ.

BMC Genomics. 2018 May 21;19(1):376. doi: 10.1186/s12864-018-4742-6.

11.

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology.

Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, Murali SC, Chen S, Glastad KM, Goodisman MAD, Werren JH, Vineis JH, Bowen JL, Friedrich M, Jones J, Robertson HM, Feyereisen R, Mechler-Hickson A, Mathers N, Lee CE, Colbourne JK, Biales A, Johnston JS, Wellborn GA, Rosendale AJ, Cridge AG, Munoz-Torres MC, Bain PA, Manny AR, Major KM, Lambert FN, Vulpe CD, Tuck P, Blalock BJ, Lin YY, Smith ME, Ochoa-Acuña H, Chen MM, Childers CP, Qu J, Dugan S, Lee SL, Chao H, Dinh H, Han Y, Doddapaneni H, Worley KC, Muzny DM, Gibbs RA, Richards S.

Environ Sci Technol. 2018 May 15;52(10):6009-6022. doi: 10.1021/acs.est.8b00837. Epub 2018 Apr 24.

12.

Evolutionary transition from blood feeding to obligate nonbiting in a mosquito.

Bradshaw WE, Burkhart J, Colbourne JK, Borowczak R, Lopez J, Denlinger DL, Reynolds JA, Pfrender ME, Holzapfel CM.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):1009-1014. doi: 10.1073/pnas.1717502115. Epub 2017 Dec 18.

13.

Conserved Transcription Factors Steer Growth-Related Genomic Programs in Daphnia.

Spanier KI, Jansen M, Decaestecker E, Hulselmans G, Becker D, Colbourne JK, Orsini L, De Meester L, Aerts S.

Genome Biol Evol. 2017 Jun 1;9(6):1821-1842. doi: 10.1093/gbe/evx127.

14.

Early transcriptional response pathways in Daphnia magna are coordinated in networks of crustacean-specific genes.

Orsini L, Brown JB, Shams Solari O, Li D, He S, Podicheti R, Stoiber MH, Spanier KI, Gilbert D, Jansen M, Rusch DB, Pfrender ME, Colbourne JK, Frilander MJ, Kvist J, Decaestecker E, De Schamphelaere KAC, De Meester L.

Mol Ecol. 2018 Feb;27(4):886-897. doi: 10.1111/mec.14261. Epub 2017 Aug 19.

15.

The landscape of extreme genomic variation in the highly adaptable Atlantic killifish.

Reid NM, Jackson CE, Gilbert D, Minx P, Montague MJ, Hampton TH, Helfrich LW, King BL, Nacci DE, Aluru N, Karchner SI, Colbourne JK, Hahn ME, Shaw JR, Oleksiak MF, Crawford DL, Warren WC, Whitehead A.

Genome Biol Evol. 2017 Feb 13. doi: 10.1093/gbe/evx023. [Epub ahead of print] No abstract available.

16.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2017 Jan 31;4:170006. doi: 10.1038/sdata.2017.6. No abstract available.

17.

The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish.

Reid NM, Proestou DA, Clark BW, Warren WC, Colbourne JK, Shaw JR, Karchner SI, Hahn ME, Nacci D, Oleksiak MF, Crawford DL, Whitehead A.

Science. 2016 Dec 9;354(6317):1305-1308.

18.

OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.

Rago A, Gilbert DG, Choi JH, Sackton TB, Wang X, Kelkar YD, Werren JH, Colbourne JK.

BMC Genomics. 2016 Aug 25;17:678. doi: 10.1186/s12864-016-2886-9.

19.

Thermal variation and factors influencing vertical migration behavior in Daphnia populations.

Glaholt SP, Kennedy ML, Turner E, Colbourne JK, Shaw JR.

J Therm Biol. 2016 Aug;60:70-8. doi: 10.1016/j.jtherbio.2016.06.008. Epub 2016 Jun 16.

20.

Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors.

Orsini L, Gilbert D, Podicheti R, Jansen M, Brown JB, Solari OS, Spanier KI, Colbourne JK, Rusch DB, Decaestecker E, Asselman J, De Schamphelaere KA, Ebert D, Haag CR, Kvist J, Laforsch C, Petrusek A, Beckerman AP, Little TJ, Chaturvedi A, Pfrender ME, De Meester L, Frilander MJ.

Sci Data. 2016 May 10;3:160030. doi: 10.1038/sdata.2016.30. Erratum in: Sci Data. 2017 Jan 31;4:170006. Rush, Douglas [corrected to Rusch, Douglas B].

21.

Male meiosis in Crustacea: synapsis, recombination, epigenetics and fertility in Daphnia magna.

Gómez R, Van Damme K, Gosálvez J, Morán ES, Colbourne JK.

Chromosoma. 2016 Sep;125(4):769-87. doi: 10.1007/s00412-015-0558-1. Epub 2015 Dec 21.

22.

Novel Cadmium Responsive MicroRNAs in Daphnia pulex.

Chen S, McKinney GJ, Nichols KM, Colbourne JK, Sepúlveda MS.

Environ Sci Technol. 2015 Dec 15;49(24):14605-13. doi: 10.1021/acs.est.5b03988. Epub 2015 Nov 20.

PMID:
26550707
23.

Evolutionary divergence of core and post-translational circadian clock genes in the pitcher-plant mosquito, Wyeomyia smithii.

Tormey D, Colbourne JK, Mockaitis K, Choi JH, Lopez J, Burkhart J, Bradshaw W, Holzapfel C.

BMC Genomics. 2015 Oct 6;16:754. doi: 10.1186/s12864-015-1937-y.

24.

Synergistic interactions of biotic and abiotic environmental stressors on gene expression.

Altshuler I, McLeod AM, Colbourne JK, Yan ND, Cristescu ME.

Genome. 2015 Mar;58(3):99-109. doi: 10.1139/gen-2015-0045.

PMID:
26158383
25.

Ionotropic glutamate receptors mediate inducible defense in the water flea Daphnia pulex.

Miyakawa H, Sato M, Colbourne JK, Iguchi T.

PLoS One. 2015 Mar 23;10(3):e0121324. doi: 10.1371/journal.pone.0121324. eCollection 2015.

26.

Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation.

Xue J, Zhou X, Zhang CX, Yu LL, Fan HW, Wang Z, Xu HJ, Xi Y, Zhu ZR, Zhou WW, Pan PL, Li BL, Colbourne JK, Noda H, Suetsugu Y, Kobayashi T, Zheng Y, Liu S, Zhang R, Liu Y, Luo YD, Fang DM, Chen Y, Zhan DL, Lv XD, Cai Y, Wang ZB, Huang HJ, Cheng RL, Zhang XC, Lou YH, Yu B, Zhuo JC, Ye YX, Zhang WQ, Shen ZC, Yang HM, Wang J, Wang J, Bao YY, Cheng JA.

Genome Biol. 2014 Dec 3;15(12):521. doi: 10.1186/s13059-014-0521-0.

27.

Differential transcriptomic responses of ancient and modern Daphnia genotypes to phosphorus supply.

Roy Chowdhury P, Frisch D, Becker D, Lopez JA, Weider LJ, Colbourne JK, Jeyasingh PD.

Mol Ecol. 2015 Jan;24(1):123-35. doi: 10.1111/mec.13009.

PMID:
25410011
28.

Functional genomics of acclimation and adaptation in response to thermal stress in Daphnia.

Yampolsky LY, Zeng E, Lopez J, Williams PJ, Dick KB, Colbourne JK, Pfrender ME.

BMC Genomics. 2014 Oct 4;15:859. doi: 10.1186/1471-2164-15-859.

29.

Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes.

Shaw JR, Hampton TH, King BL, Whitehead A, Galvez F, Gross RH, Keith N, Notch E, Jung D, Glaholt SP, Chen CY, Colbourne JK, Stanton BA.

Mol Biol Evol. 2014 Nov;31(11):3002-15. doi: 10.1093/molbev/msu241. Epub 2014 Aug 25.

30.

Genomic data integration for ecological and evolutionary traits in non-model organisms.

Tagu D, Colbourne JK, Nègre N.

BMC Genomics. 2014 Jul 17;15:490. doi: 10.1186/1471-2164-15-490.

31.

Functional genomics of intraspecific variation in carbon and phosphorus kinetics in Daphnia.

Chowdhury PR, Lopez JA, Weider LJ, Colbourne JK, Jeyasingh PD.

J Exp Zool A Ecol Genet Physiol. 2014 Aug;321(7):387-98. doi: 10.1002/jez.1869. Epub 2014 May 17.

PMID:
24838198
32.

Transcriptome assembly and microarray construction for Enchytraeus crypticus, a model oligochaete to assess stress response mechanisms derived from soil conditions.

Castro-Ferreira MP, de Boer TE, Colbourne JK, Vooijs R, van Gestel CA, van Straalen NM, Soares AM, Amorim MJ, Roelofs D.

BMC Genomics. 2014 Apr 23;15:302. doi: 10.1186/1471-2164-15-302.

33.

Genome-wide transcription profiles reveal genotype-dependent responses of biological pathways and gene-families in Daphnia exposed to single and mixed stressors.

De Coninck DI, Asselman J, Glaholt S, Janssen CR, Colbourne JK, Shaw JR, De Schamphelaere KA.

Environ Sci Technol. 2014 Mar 18;48(6):3513-22. doi: 10.1021/es4053363. Epub 2014 Feb 26.

34.

A millennial-scale chronicle of evolutionary responses to cultural eutrophication in Daphnia.

Frisch D, Morton PK, Chowdhury PR, Culver BW, Colbourne JK, Weider LJ, Jeyasingh PD.

Ecol Lett. 2014 Mar;17(3):360-8. doi: 10.1111/ele.12237. Epub 2014 Jan 8.

PMID:
24400978
35.

Potential for sexual conflict assessed via testosterone-mediated transcriptional changes in liver and muscle of a songbird.

Peterson MP, Rosvall KA, Taylor CA, Lopez JA, Choi JH, Ziegenfus C, Tang H, Colbourne JK, Ketterson ED.

J Exp Biol. 2014 Feb 15;217(Pt 4):507-17. doi: 10.1242/jeb.089813. Epub 2013 Nov 6.

36.

Function and evolution of DNA methylation in Nasonia vitripennis.

Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH.

PLoS Genet. 2013;9(10):e1003872. doi: 10.1371/journal.pgen.1003872. Epub 2013 Oct 10.

37.

Transcription patterns of genes encoding four metallothionein homologs in Daphnia pulex exposed to copper and cadmium are time- and homolog-dependent.

Asselman J, Shaw JR, Glaholt SP, Colbourne JK, De Schamphelaere KA.

Aquat Toxicol. 2013 Oct 15;142-143:422-30. doi: 10.1016/j.aquatox.2013.09.010. Epub 2013 Sep 23.

38.

Multiple origins of pyrethroid insecticide resistance across the species complex of a nontarget aquatic crustacean, Hyalella azteca.

Weston DP, Poynton HC, Wellborn GA, Lydy MJ, Blalock BJ, Sepulveda MS, Colbourne JK.

Proc Natl Acad Sci U S A. 2013 Oct 8;110(41):16532-7. doi: 10.1073/pnas.1302023110. Epub 2013 Sep 24.

39.

A mutation in the receptor Methoprene-tolerant alters juvenile hormone response in insects and crustaceans.

Miyakawa H, Toyota K, Hirakawa I, Ogino Y, Miyagawa S, Oda S, Tatarazako N, Miura T, Colbourne JK, Iguchi T.

Nat Commun. 2013;4:1856. doi: 10.1038/ncomms2868.

PMID:
23673641
40.

Testosterone affects neural gene expression differently in male and female juncos: a role for hormones in mediating sexual dimorphism and conflict.

Peterson MP, Rosvall KA, Choi JH, Ziegenfus C, Tang H, Colbourne JK, Ketterson ED.

PLoS One. 2013 Apr 16;8(4):e61784. doi: 10.1371/journal.pone.0061784. Print 2013.

41.

Molecular cloning of doublesex genes of four cladocera (water flea) species.

Toyota K, Kato Y, Sato M, Sugiura N, Miyagawa S, Miyakawa H, Watanabe H, Oda S, Ogino Y, Hiruta C, Mizutani T, Tatarazako N, Paland S, Jackson C, Colbourne JK, Iguchi T.

BMC Genomics. 2013 Apr 10;14:239. doi: 10.1186/1471-2164-14-239.

42.

Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum.

Gibson AK, Smith Z, Fuqua C, Clay K, Colbourne JK.

BMC Genomics. 2013 Feb 27;14:135. doi: 10.1186/1471-2164-14-135.

43.

The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments.

Orsini L, Schwenk K, De Meester L, Colbourne JK, Pfrender ME, Weider LJ.

Trends Ecol Evol. 2013 May;28(5):274-82. doi: 10.1016/j.tree.2013.01.009. Epub 2013 Feb 8.

44.

Fine-scale mapping of the Nasonia genome to chromosomes using a high-density genotyping microarray.

Desjardins CA, Gadau J, Lopez JA, Niehuis O, Avery AR, Loehlin DW, Richards S, Colbourne JK, Werren JH.

G3 (Bethesda). 2013 Feb;3(2):205-15. doi: 10.1534/g3.112.004739. Epub 2013 Feb 1.

45.

Identification of maternally-loaded RNA transcripts in unfertilized eggs of Tribolium castaneum.

Preuss KM, Lopez JA, Colbourne JK, Wade MJ.

BMC Genomics. 2012 Nov 27;13:671. doi: 10.1186/1471-2164-13-671.

46.

Identification of pathways, gene networks, and paralogous gene families in Daphnia pulex responding to exposure to the toxic cyanobacterium Microcystis aeruginosa.

Asselman J, De Coninck DI, Glaholt S, Colbourne JK, Janssen CR, Shaw JR, De Schamphelaere KA.

Environ Sci Technol. 2012 Aug 7;46(15):8448-57. doi: 10.1021/es301100j. Epub 2012 Jul 25.

47.

Gut pathology and responses to the microsporidium Nosema ceranae in the honey bee Apis mellifera.

Dussaubat C, Brunet JL, Higes M, Colbourne JK, Lopez J, Choi JH, Martín-Hernández R, Botías C, Cousin M, McDonnell C, Bonnet M, Belzunces LP, Moritz RF, Le Conte Y, Alaux C.

PLoS One. 2012;7(5):e37017. doi: 10.1371/journal.pone.0037017. Epub 2012 May 18.

48.

The evolution of salinity tolerance in Daphnia: a functional genomics approach.

Latta LC, Weider LJ, Colbourne JK, Pfrender ME.

Ecol Lett. 2012 Aug;15(8):794-802. doi: 10.1111/j.1461-0248.2012.01799.x. Epub 2012 May 15.

PMID:
22583985
49.

Functional characterization of four metallothionein genes in Daphnia pulex exposed to environmental stressors.

Asselman J, Glaholt SP, Smith Z, Smagghe G, Janssen CR, Colbourne JK, Shaw JR, De Schamphelaere KA.

Aquat Toxicol. 2012 Apr;110-111:54-65. doi: 10.1016/j.aquatox.2011.12.010. Epub 2011 Dec 29.

50.

The genome of the green anole lizard and a comparative analysis with birds and mammals.

Alföldi J, Di Palma F, Grabherr M, Williams C, Kong L, Mauceli E, Russell P, Lowe CB, Glor RE, Jaffe JD, Ray DA, Boissinot S, Shedlock AM, Botka C, Castoe TA, Colbourne JK, Fujita MK, Moreno RG, ten Hallers BF, Haussler D, Heger A, Heiman D, Janes DE, Johnson J, de Jong PJ, Koriabine MY, Lara M, Novick PA, Organ CL, Peach SE, Poe S, Pollock DD, de Queiroz K, Sanger T, Searle S, Smith JD, Smith Z, Swofford R, Turner-Maier J, Wade J, Young S, Zadissa A, Edwards SV, Glenn TC, Schneider CJ, Losos JB, Lander ES, Breen M, Ponting CP, Lindblad-Toh K.

Nature. 2011 Aug 31;477(7366):587-91. doi: 10.1038/nature10390.

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