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Items: 1 to 50 of 150

1.

Genetic and phenotypic characterization of NKX6-2-related spastic ataxia and hypomyelination.

Chelban V, Alsagob M, Kloth K, Chirita-Emandi A, Vandrovcova J, Maroofian R, Davagnanam I, Bakhtiari S, AlSayed MD, Rahbeeni Z, AlZaidan H, Malintan NT, Johannsen J, Efthymiou S, Ghayoor Karimiani E, Mankad K, Al-Shahrani SA, Beiraghi Toosi M, AlShammari M, Groppa S, Haridy NA, AlQuait L, Qari A, Huma R, Salih MA, Almass R, Almutairi FB, Hamad MH, Alorainy IA, Ramzan K, Imtiaz F, Puiu M, Kruer MC, Bierhals T, Wood NW, Colak D, Houlden H, Kaya N.

Eur J Neurol. 2019 Sep 11. doi: 10.1111/ene.14082. [Epub ahead of print]

PMID:
31509304
2.

[Evaluation of the Two Different Real Time Polymerase Chain Reaction Methods Used for BK Virus (BKV) Quantification and BKV Genotype Assignment].

Erman Daloğlu A, Mutlu D, Sağlık İ, Can Sarınoğlu R, Mutlu E, Niesters HG, Çolak D.

Mikrobiyol Bul. 2019 Jul;53(3):285-296. doi: 10.5578/mb.68059. Turkish.

3.

[Evaluation of the BD Phoenix100 System and Colistin Broth Disk Elution Method for Antimicrobial Susceptibility Testing of Colistin Against Gram-negative Bacteria].

Koyuncu Özyurt Ö, Özhak B, Öğünç D, Yıldız E, Çolak D, Günseren F, Öngüt G.

Mikrobiyol Bul. 2019 Jul;53(3):254-261. doi: 10.5578/mb.68066. Turkish.

4.

Evaluation of a nucleic acid amplification assay for the diagnosis of Clostridioides difficile infection.

Koyuncu-Ozyurt O, Ozhak B, Ogunc D, Ongut G, Gunseren F, Donmez L, Colak D.

Anaerobe. 2019 Jun 27;59:201-204. doi: 10.1016/j.anaerobe.2019.06.015. [Epub ahead of print]

PMID:
31255716
5.

Sensory Adaptation to Silicone Hydrogel Contact Lens Wear Is Not Associated With Alterations in the Corneal Subbasal Nerve Plexus.

Kocabeyoglu S, Colak D, Mocan MC, Irkec M.

Cornea. 2019 Sep;38(9):1142-1146. doi: 10.1097/ICO.0000000000002031.

PMID:
31232743
6.

Biochemical characterization of a novel thermostable feruloyl esterase from Geobacillus thermoglucosidasius DSM 2542T.

Ay Sal F, Colak DN, Guler HI, Canakci S, Belduz AO.

Mol Biol Rep. 2019 Aug;46(4):4385-4395. doi: 10.1007/s11033-019-04893-6. Epub 2019 Jun 14.

PMID:
31201678
7.

First report of two successive deletions on chromosome 15q13 cytogenetic bands in a boy and girl: additional data to 15q13.3 syndrome with a report of high IQ patient.

Alsagob M, Salih MA, Hamad MHA, Al-Yafee Y, Al-Zahrani J, Al-Bakheet A, Nester M, Sakati N, Wakil SM, AlOdaib A, Colak D, Kaya N.

Mol Cytogenet. 2019 May 18;12:21. doi: 10.1186/s13039-019-0432-6. eCollection 2019.

8.

Biomolecular Databases and Subnetwork Identification Approaches of Interest to Big Data Community: An Expert Review.

Al-Harazi O, El Allali A, Colak D.

OMICS. 2019 Mar;23(3):138-151. doi: 10.1089/omi.2018.0205.

PMID:
30883301
9.

β1 Integrin is essential for fascin-mediated breast cancer stem cell function and disease progression.

Barnawi R, Al-Khaldi S, Colak D, Tulbah A, Al-Tweigeri T, Fallatah M, Monies D, Ghebeh H, Al-Alwan M.

Int J Cancer. 2019 Aug 1;145(3):830-841. doi: 10.1002/ijc.32183. Epub 2019 Feb 18.

10.

Bi-allelic TMEM94 Truncating Variants Are Associated with Neurodevelopmental Delay, Congenital Heart Defects, and Distinct Facial Dysmorphism.

Stephen J, Maddirevula S, Nampoothiri S, Burke JD, Herzog M, Shukla A, Steindl K, Eskin A, Patil SJ, Joset P, Lee H, Garrett LJ, Yokoyama T, Balanda N, Bodine SP, Tolman NJ, Zerfas PM, Zheng A, Ramantani G, Girisha KM, Rivas C, Suresh PV, Elkahloun A, Alsaif HS, Wakil SM, Mahmoud L, Ali R, Prochazkova M; Undiagnosed Diseases Network members, Kulkarni AB, Ben-Omran T, Colak D, Morris HD, Rauch A, Martinez-Agosto JA, Nelson SF, Alkuraya FS, Gahl WA, Malicdan MCV.

Am J Hum Genet. 2018 Dec 6;103(6):948-967. doi: 10.1016/j.ajhg.2018.11.001.

11.

Cloning, characterization and paper pulp applications of a newly isolated DyP type peroxidase from Rhodococcus sp. T1.

Sahinkaya M, Colak DN, Ozer A, Canakci S, Deniz I, Belduz AO.

Mol Biol Rep. 2019 Feb;46(1):569-580. doi: 10.1007/s11033-018-4509-9. Epub 2018 Nov 24.

PMID:
30474775
12.

Deletion and Functional Analysis of Hepatitis B Virus X Protein: Evidence for an Effect on Cell Cycle Regulators.

Al-Anazi MR, Nazir N, Colak D, Al-Ahdal MN, Al-Qahtani AA.

Cell Physiol Biochem. 2018;49(5):1987-1998. doi: 10.1159/000493670. Epub 2018 Sep 20.

13.

Evaluation of Samples with DFS Staining Pattern Detected by Indirect Immunofluorescence Assay.

Togay A, Mutlu E, Ongut G, Mutlu D, Colak D, Gultekin M.

Clin Lab. 2018 Mar 1;64(3):393-397. doi: 10.7754/Clin.Lab.2017.170808.

PMID:
29739116
14.

Identification of novel genomic imbalances in Saudi patients with congenital heart disease.

Al-Hassnan ZN, Albawardi W, Almutairi F, AlMass R, AlBakheet A, Mustafa OM, AlQuait L, Shinwari ZMA, Wakil S, Salih MA, Al-Fayyadh M, Hassan SM, Aljoufan M, Al-Nakhli O, Levy B, AlMaarik B, Al-Hakami HA, Alsagob M, Colak D, Kaya N.

Mol Cytogenet. 2018 Jan 25;11:9. doi: 10.1186/s13039-018-0356-6. eCollection 2018.

15.

High prevalence of deleterious BRCA1 and BRCA2 germline mutations in arab breast and ovarian cancer patients.

Alhuqail AJ, Alzahrani A, Almubarak H, Al-Qadheeb S, Alghofaili L, Almoghrabi N, Alhussaini H, Park BH, Colak D, Karakas B.

Breast Cancer Res Treat. 2018 Apr;168(3):695-702. doi: 10.1007/s10549-017-4635-4. Epub 2018 Jan 2.

PMID:
29297111
16.

A Novel Homozygous Mutation in SPTBN2 Leads to Spinocerebellar Ataxia in a Consanguineous Family: Report of a New Infantile-Onset Case and Brief Review of the Literature.

Al-Muhaizea MA, AlMutairi F, Almass R, AlHarthi S, Aldosary MS, Alsagob M, AlOdaib A, Colak D, Kaya N.

Cerebellum. 2018 Jun;17(3):276-285. doi: 10.1007/s12311-017-0893-2. Review.

PMID:
29196973
17.

PD-L1 promotes OCT4 and Nanog expression in breast cancer stem cells by sustaining PI3K/AKT pathway activation.

Almozyan S, Colak D, Mansour F, Alaiya A, Al-Harazi O, Qattan A, Al-Mohanna F, Al-Alwan M, Ghebeh H.

Int J Cancer. 2017 Oct 1;141(7):1402-1412. doi: 10.1002/ijc.30834. Epub 2017 Jun 30.

18.

Protective effects of coenzyme Q10 and resveratrol on oxidative stress induced by various dioxins on transheterozigot larvae of Drosophila melanogaster.

Çolak DA, Uysal H.

Toxicol Res (Camb). 2017 May 8;6(4):521-525. doi: 10.1039/c7tx00027h. eCollection 2017 Jul 1.

19.

GZF1 Mutations Expand the Genetic Heterogeneity of Larsen Syndrome.

Patel N, Shamseldin HE, Sakati N, Khan AO, Softa A, Al-Fadhli FM, Hashem M, Abdulwahab FM, Alshidi T, Alomar R, Alobeid E, Wakil SM, Colak D, Alkuraya FS.

Am J Hum Genet. 2017 May 4;100(5):831-836. doi: 10.1016/j.ajhg.2017.04.008.

20.

The Phenotype and Outcome of Infantile Cardiomyopathy Caused by a Homozygous ELAC2 Mutation.

Shinwari ZMA, Almesned A, Alakhfash A, Al-Rashdan AM, Faqeih E, Al-Humaidi Z, Alomrani A, Alghamdi M, Colak D, Alwadai A, Rababh M, Al-Fayyadh M, Al-Hassnan ZN.

Cardiology. 2017;137(3):188-192. doi: 10.1159/000465516. Epub 2017 Apr 26.

PMID:
28441660
21.

Evaluation of MALDI-TOF-MS for the Identification of Yeast Isolates Causing Bloodstream Infection.

Turhan O, Ozhak-Baysan B, Zaragoza O, Er H, Sarıtas ZE, Ongut G, Ogunc D, Colak D, Cuenca-Estrella M.

Clin Lab. 2017 Apr 1;63(4):699-703. doi: 10.7754/Clin.Lab.2016.161101.

PMID:
28397475
22.

Matrix-Assisted Laser Desorption-Ionization Time-of-Flight Mass Spectrometry (MALDI- TOF MS) for Early Identification of Septic Patients.

Sekercioglu AO, Cekin Y, Ogunc D, Ongut G, Baysan BO, Colak D, Gunseren F, Donmez L.

Clin Lab. 2017 Apr 1;63(4):839-844. doi: 10.7754/Clin.Lab.2016.160907.

PMID:
28397470
23.

Polysorbate 20 increases oral absorption of digoxin in wild-type Sprague Dawley rats, but not in mdr1a(-/-) Sprague Dawley rats.

Nielsen CU, Abdulhussein AA, Colak D, Holm R.

Int J Pharm. 2016 Nov 20;513(1-2):78-87. doi: 10.1016/j.ijpharm.2016.09.011. Epub 2016 Sep 4.

PMID:
27601334
24.

Polypeptide with electroactive endgroups as sensing platform for the abused drug 'methamphetamine' by bioelectrochemical method.

Demir B, Yilmaz T, Guler E, Gumus ZP, Akbulut H, Aldemir E, Coskunol H, Colak DG, Cianga I, Yamada S, Timur S, Endo T, Yagci Y.

Talanta. 2016 Dec 1;161:789-796. doi: 10.1016/j.talanta.2016.09.042. Epub 2016 Sep 17.

PMID:
27769482
25.

Integrated Left Ventricular Global Transcriptome and Proteome Profiling in Human End-Stage Dilated Cardiomyopathy.

Colak D, Alaiya AA, Kaya N, Muiya NP, AlHarazi O, Shinwari Z, Andres E, Dzimiri N.

PLoS One. 2016 Oct 6;11(10):e0162669. doi: 10.1371/journal.pone.0162669. eCollection 2016.

26.

KCNA4 deficiency leads to a syndrome of abnormal striatum, congenital cataract and intellectual disability.

Kaya N, Alsagob M, D'Adamo MC, Al-Bakheet A, Hasan S, Muccioli M, Almutairi FB, Almass R, Aldosary M, Monies D, Mustafa OM, Alyounes B, Kenana R, Al-Zahrani J, Naim E, Binhumaid FS, Qari A, Almutairi F, Meyer B, Plageman TF, Pessia M, Colak D, Al-Owain M.

J Med Genet. 2016 Nov;53(11):786-792. doi: 10.1136/jmedgenet-2015-103637. Epub 2016 Aug 31.

PMID:
27582084
27.

Rare Variants of Carotid-Vertebrobasilar Anastomoses.

Petik B, Colak D, Sirik M, Erturk SM.

J Belg Soc Radiol. 2016 Aug 31;100(1):74. doi: 10.5334/jbr-btr.1167.

28.

Generation of acid mine drainage around the Karaerik copper mine (Espiye, Giresun, NE Turkey): implications from the bacterial population in the Acısu effluent.

Sağlam ES, Akçay M, Çolak DN, İnan Bektaş K, Beldüz AO.

Extremophiles. 2016 Sep;20(5):673-85. doi: 10.1007/s00792-016-0857-3. Epub 2016 Jun 23.

PMID:
27338270
29.

Integrated Genomic and Network-Based Analyses of Complex Diseases and Human Disease Network.

Al-Harazi O, Al Insaif S, Al-Ajlan MA, Kaya N, Dzimiri N, Colak D.

J Genet Genomics. 2016 Jun 20;43(6):349-67. doi: 10.1016/j.jgg.2015.11.002. Epub 2015 Dec 15. Review.

PMID:
27318646
30.

[Monitoring of cytomegalovirus-specific CD4+ and CD8+ T cell responses by cytokine flow cytometry in renal transplant recipients].

Kılınçkaya Doğan H, Mutlu E, Köksoy S, Yılmaz VT, Koçak H, Çolak D, Mutlu D, Günseren F, Dinçkan A, Aliosmanoğlu İ, Süleymanlar G, Gültekin M.

Mikrobiyol Bul. 2016 Apr;50(2):224-35. Turkish.

31.

[Determination of cytomegalovirus glycoprotein B genotypes in different geographical regions and different patient groups in Turkey].

Eren Dağlar D, Öngüt G, Çolak D, Özkul A, Mutlu D, Zeytinoğlu A, Midilli K, Gökahmetoğlu S, Günseren F, Öğünç D, Gültekin M.

Mikrobiyol Bul. 2016 Jan;50(1):53-62. Turkish.

32.

Mutations in SMG9, Encoding an Essential Component of Nonsense-Mediated Decay Machinery, Cause a Multiple Congenital Anomaly Syndrome in Humans and Mice.

Shaheen R, Anazi S, Ben-Omran T, Seidahmed MZ, Caddle LB, Palmer K, Ali R, Alshidi T, Hagos S, Goodwin L, Hashem M, Wakil SM, Abouelhoda M, Colak D, Murray SA, Alkuraya FS.

Am J Hum Genet. 2016 Apr 7;98(4):643-52. doi: 10.1016/j.ajhg.2016.02.010. Epub 2016 Mar 24.

33.

Atypical Feeding and Drainage of Dural AV Fistula.

Sirik M, Petik B, Colak D, Erturk SM, Karatas M.

J Belg Soc Radiol. 2016 Mar 7;100(1):45. doi: 10.5334/jbr-btr.815.

34.

Sulfonamide inhibition studies of the β-carbonic anhydrase from the newly discovered bacterium Enterobacter sp. B13.

Eminoğlu A, Vullo D, Aşık A, Çolak DN, Çanakçı S, Beldüz AO, Supuran CT.

Bioorg Med Chem Lett. 2016 Apr 1;26(7):1821-6. doi: 10.1016/j.bmcl.2016.02.032. Epub 2016 Feb 16.

PMID:
26920803
35.

Disappearing Inferior Vena Cava in A Pediatric Patient with Down Syndrome and Hereditary Thrombophilia.

Petik B, Cevik MO, Sirik M, Colak D, Erturk SM.

J Belg Soc Radiol. 2016 Feb 8;100(1):22. doi: 10.5334/jbr-btr.975.

36.

Treatment of retinitis pigmentosa due to MERTK mutations by ocular subretinal injection of adeno-associated virus gene vector: results of a phase I trial.

Ghazi NG, Abboud EB, Nowilaty SR, Alkuraya H, Alhommadi A, Cai H, Hou R, Deng WT, Boye SL, Almaghamsi A, Al Saikhan F, Al-Dhibi H, Birch D, Chung C, Colak D, LaVail MM, Vollrath D, Erger K, Wang W, Conlon T, Zhang K, Hauswirth W, Alkuraya FS.

Hum Genet. 2016 Mar;135(3):327-43. doi: 10.1007/s00439-016-1637-y. Epub 2016 Jan 29.

PMID:
26825853
37.

A substitution mutation in cardiac ubiquitin ligase, FBXO32, is associated with an autosomal recessive form of dilated cardiomyopathy.

Al-Hassnan ZN, Shinwari ZM, Wakil SM, Tulbah S, Mohammed S, Rahbeeni Z, Alghamdi M, Rababh M, Colak D, Kaya N, Al-Fayyadh M, Alburaiki J.

BMC Med Genet. 2016 Jan 14;17:3. doi: 10.1186/s12881-016-0267-5.

38.

Treatment of Lymph Node-Negative, Early-Stage HER2-Positive Breast Cancer.

Oguz A, Keskin GS, Colak D, Altundag O, Akcali Z.

J Clin Oncol. 2016 Feb 20;34(6):639-40. doi: 10.1200/JCO.2015.63.8411. Epub 2015 Dec 7. No abstract available.

PMID:
26644534
39.

Cloning, expression and biochemical characterization of a β-carbonic anhydrase from the soil bacterium Enterobacter sp. B13.

Eminoğlu A, Vullo D, Aşık A, Çolak DN, Supuran CT, Çanakçı S, Osman Beldüz A.

J Enzyme Inhib Med Chem. 2016 Dec;31(6):1111-8. doi: 10.3109/14756366.2015.1100176. Epub 2015 Oct 26.

PMID:
26497870
40.

Bidirectional crosstalk between PD-L1 expression and epithelial to mesenchymal transition: significance in claudin-low breast cancer cells.

Alsuliman A, Colak D, Al-Harazi O, Fitwi H, Tulbah A, Al-Tweigeri T, Al-Alwan M, Ghebeh H.

Mol Cancer. 2015 Aug 7;14:149. doi: 10.1186/s12943-015-0421-2.

41.

Deletion of low molecular weight protein tyrosine phosphatase (Acp1) protects against stress-induced cardiomyopathy.

Wade F, Quijada P, Al-Haffar KM, Awad SM, Kunhi M, Toko H, Marashly Q, Belhaj K, Zahid I, Al-Mohanna F, Stanford SM, Alvarez R, Liu Y, Colak D, Jordan MC, Roos KP, Assiri A, Al-Habeeb W, Sussman M, Bottini N, Poizat C.

J Pathol. 2015 Dec;237(4):482-94. doi: 10.1002/path.4594. Epub 2015 Sep 1.

42.
44.

Prognostic factors for gemcitabine-refractory patients with advanced pancreatic cancer: a retrospective analysis of a multicentre study (Anatolian Society of Medical Oncology).

İnal A, Kos FT, Algın E, Yıldız R, Berk V, Unek İT, Colak D, Dane F, Geredeli C, Isıkdogan A.

Contemp Oncol (Pozn). 2015;19(2):125-9. doi: 10.5114/wo.2014.43933. Epub 2015 May 13.

45.

Bioimpedance spectroscopy for the differential diagnosis of hyponatremia.

Kose SB, Hur E, Magden K, Yildiz G, Colak D, Kucuk E, Toka B, Kucuk H, Yildirim I, Kokturk F, Duman S.

Ren Fail. 2015 Jul;37(6):947-50. doi: 10.3109/0886022X.2015.1040418. Epub 2015 Apr 27.

PMID:
25915455
46.

Coupled local translation and degradation regulate growth cone collapse.

Deglincerti A, Liu Y, Colak D, Hengst U, Xu G, Jaffrey SR.

Nat Commun. 2015 Apr 22;6:6888. doi: 10.1038/ncomms7888.

47.

Comparison of selective and enrichment media for isolation of vancomycin-resistant enterococci from rectal swab specimens.

Ongut G, Ozyurt OK, Baysan BO, Daglar D, Ogunc D, Inan D, Colak D, Senol YY, Gunseren F.

Indian J Med Microbiol. 2015 Apr-Jun;33(2):320-1. doi: 10.4103/0255-0857.154897. No abstract available.

48.

A novel APC mutation defines a second locus for Cenani-Lenz syndrome.

Patel N, Faqeih E, Anazi S, Alfawareh M, Wakil SM, Colak D, Alkuraya FS.

J Med Genet. 2015 May;52(5):317-21. doi: 10.1136/jmedgenet-2014-102850. Epub 2015 Feb 12.

PMID:
25676610
49.

ISCA2 mutation causes infantile neurodegenerative mitochondrial disorder.

Al-Hassnan ZN, Al-Dosary M, Alfadhel M, Faqeih EA, Alsagob M, Kenana R, Almass R, Al-Harazi OS, Al-Hindi H, Malibari OI, Almutari FB, Tulbah S, Alhadeq F, Al-Sheddi T, Alamro R, AlAsmari A, Almuntashri M, Alshaalan H, Al-Mohanna FA, Colak D, Kaya N.

J Med Genet. 2015 Mar;52(3):186-94. doi: 10.1136/jmedgenet-2014-102592. Epub 2014 Dec 24.

PMID:
25539947
50.

Epidemiology of pertussis in adolescents and adults in Turkey.

Karagul A, Ogunc D, Midilli K, Ongut G, Ozhak Baysan B, Donmez L, Daglar D, Kuskucu MA, Bingol A, Ozbudak O, Colak D, Gunseren F.

Epidemiol Infect. 2015 Sep;143(12):2613-8. doi: 10.1017/S0950268814003483. Epub 2014 Dec 19.

PMID:
25524454

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