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Items: 21

1.

Sequanix: a dynamic graphical interface for Snakemake workflows.

Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T.

Bioinformatics. 2018 Jun 1;34(11):1934-1936. doi: 10.1093/bioinformatics/bty034.

2.

GDSCTools for mining pharmacogenomic interactions in cancer.

Cokelaer T, Chen E, Iorio F, Menden MP, Lightfoot H, Saez-Rodriguez J, Garnett MJ.

Bioinformatics. 2018 Apr 1;34(7):1226-1228. doi: 10.1093/bioinformatics/btx744.

3.

Drug Resistance Mechanisms in Colorectal Cancer Dissected with Cell Type-Specific Dynamic Logic Models.

Eduati F, Doldàn-Martelli V, Klinger B, Cokelaer T, Sieber A, Kogera F, Dorel M, Garnett MJ, Blüthgen N, Saez-Rodriguez J.

Cancer Res. 2017 Jun 15;77(12):3364-3375. doi: 10.1158/0008-5472.CAN-17-0078. Epub 2017 Apr 5.

4.

Efficient randomization of biological networks while preserving functional characterization of individual nodes.

Iorio F, Bernardo-Faura M, Gobbi A, Cokelaer T, Jurman G, Saez-Rodriguez J.

BMC Bioinformatics. 2016 Dec 20;17(1):542. doi: 10.1186/s12859-016-1402-1.

5.

A Landscape of Pharmacogenomic Interactions in Cancer.

Iorio F, Knijnenburg TA, Vis DJ, Bignell GR, Menden MP, Schubert M, Aben N, Gonçalves E, Barthorpe S, Lightfoot H, Cokelaer T, Greninger P, van Dyk E, Chang H, de Silva H, Heyn H, Deng X, Egan RK, Liu Q, Mironenko T, Mitropoulos X, Richardson L, Wang J, Zhang T, Moran S, Sayols S, Soleimani M, Tamborero D, Lopez-Bigas N, Ross-Macdonald P, Esteller M, Gray NS, Haber DA, Stratton MR, Benes CH, Wessels LFA, Saez-Rodriguez J, McDermott U, Garnett MJ.

Cell. 2016 Jul 28;166(3):740-754. doi: 10.1016/j.cell.2016.06.017. Epub 2016 Jul 7.

6.

Inferring causal molecular networks: empirical assessment through a community-based effort.

Hill SM, Heiser LM, Cokelaer T, Unger M, Nesser NK, Carlin DE, Zhang Y, Sokolov A, Paull EO, Wong CK, Graim K, Bivol A, Wang H, Zhu F, Afsari B, Danilova LV, Favorov AV, Lee WS, Taylor D, Hu CW, Long BL, Noren DP, Bisberg AJ; HPN-DREAM Consortium, Mills GB, Gray JW, Kellen M, Norman T, Friend S, Qutub AA, Fertig EJ, Guan Y, Song M, Stuart JM, Spellman PT, Koeppl H, Stolovitzky G, Saez-Rodriguez J, Mukherjee S.

Nat Methods. 2016 Apr;13(4):310-8. doi: 10.1038/nmeth.3773. Epub 2016 Feb 22.

7.

DREAMTools: a Python package for scoring collaborative challenges.

Cokelaer T, Bansal M, Bare C, Bilal E, Bot BM, Chaibub Neto E, Eduati F, de la Fuente A, Gönen M, Hill SM, Hoff B, Karr JR, Küffner R, Menden MP, Meyer P, Norel R, Pratap A, Prill RJ, Weirauch MT, Costello JC, Stolovitzky G, Saez-Rodriguez J.

Version 2. F1000Res. 2015 Oct 9 [revised 2016 Jan 1];4:1030. doi: 10.12688/f1000research.7118.2. eCollection 2015.

8.

Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.

Vaga S, Bernardo-Faura M, Cokelaer T, Maiolica A, Barnes CA, Gillet LC, Hegemann B, van Drogen F, Sharifian H, Klipp E, Peter M, Saez-Rodriguez J, Aebersold R.

Mol Syst Biol. 2014 Dec 9;10:767. doi: 10.15252/msb.20145112.

9.

MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics.

Egea JA, Henriques D, Cokelaer T, Villaverde AF, MacNamara A, Danciu DP, Banga JR, Saez-Rodriguez J.

BMC Bioinformatics. 2014 May 10;15:136. doi: 10.1186/1471-2105-15-136.

10.

Network topology and parameter estimation: from experimental design methods to gene regulatory network kinetics using a community based approach.

Meyer P, Cokelaer T, Chandran D, Kim KH, Loh PR, Tucker G, Lipson M, Berger B, Kreutz C, Raue A, Steiert B, Timmer J, Bilal E, Sauro HM, Stolovitzky G, Saez-Rodriguez J.

BMC Syst Biol. 2014 Feb 7;8:13. doi: 10.1186/1752-0509-8-13.

11.

SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.

Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T.

BMC Syst Biol. 2013 Dec 10;7:135. doi: 10.1186/1752-0509-7-135.

12.

BioServices: a common Python package to access biological Web Services programmatically.

Cokelaer T, Pultz D, Harder LM, Serra-Musach J, Saez-Rodriguez J.

Bioinformatics. 2013 Dec 15;29(24):3241-2. doi: 10.1093/bioinformatics/btt547. Epub 2013 Sep 23.

13.

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.

Guziolowski C, Videla S, Eduati F, Thiele S, Cokelaer T, Siegel A, Saez-Rodriguez J.

Bioinformatics. 2013 Sep 15;29(18):2320-6. doi: 10.1093/bioinformatics/btt393. Epub 2013 Jul 12. Erratum in: Bioinformatics. 2014 Jul 1;30(13):1942.

14.

Evaluation of methods for modeling transcription factor sequence specificity.

Weirauch MT, Cote A, Norel R, Annala M, Zhao Y, Riley TR, Saez-Rodriguez J, Cokelaer T, Vedenko A, Talukder S; DREAM5 Consortium, Bussemaker HJ, Morris QD, Bulyk ML, Stolovitzky G, Hughes TR.

Nat Biotechnol. 2013 Feb;31(2):126-34. doi: 10.1038/nbt.2486. Epub 2013 Jan 27.

15.

CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.

Terfve C, Cokelaer T, Henriques D, MacNamara A, Goncalves E, Morris MK, van Iersel M, Lauffenburger DA, Saez-Rodriguez J.

BMC Syst Biol. 2012 Oct 18;6:133. doi: 10.1186/1752-0509-6-133.

16.

L-py: an L-system simulation framework for modeling plant architecture development based on a dynamic language.

Boudon F, Pradal C, Cokelaer T, Prusinkiewicz P, Godin C.

Front Plant Sci. 2012 May 30;3:76. doi: 10.3389/fpls.2012.00076. eCollection 2012.

17.

An upper limit on the stochastic gravitational-wave background of cosmological origin.

LIGO Scientific Collaboration & Virgo Collaboration, Abbott BP, Abbott R, Acernese F, Adhikari R, Ajith P, Allen B, Allen G, Alshourbagy M, Amin RS, Anderson SB, Anderson WG, Antonucci F, Aoudia S, Arain MA, Araya M, Armandula H, Armor P, Arun KG, Aso Y, Aston S, Astone P, Aufmuth P, Aulbert C, Babak S, Baker P, Ballardin G, Ballmer S, Barker C, Barker D, Barone F, Barr B, Barriga P, Barsotti L, Barsuglia M, Barton MA, Bartos I, Bassiri R, Bastarrika M, Bauer TS, Behnke B, Beker M, Benacquista M, Betzwieser J, Beyersdorf PT, Bigotta S, Bilenko IA, Billingsley G, Birindelli S, Biswas R, Bizouard MA, Black E, Blackburn JK, Blackburn L, Blair D, Bland B, Boccara C, Bodiya TP, Bogue L, Bondu F, Bonelli L, Bork R, Boschi V, Bose S, Bosi L, Braccini S, Bradaschia C, Brady PR, Braginsky VB, Brand JF, Brau JE, Bridges DO, Brillet A, Brinkmann M, Brisson V, Van Den Broeck C, Brooks AF, Brown DA, Brummit A, Brunet G, Bullington A, Bulten HJ, Buonanno A, Burmeister O, Buskulic D, Byer RL, Cadonati L, Cagnoli G, Calloni E, Camp JB, Campagna E, Cannizzo J, Cannon KC, Canuel B, Cao J, Carbognani F, Cardenas L, Caride S, Castaldi G, Caudill S, Cavaglià M, Cavalier F, Cavalieri R, Cella G, Cepeda C, Cesarini E, Chalermsongsak T, Chalkley E, Charlton P, Chassande-Mottin E, Chatterji S, Chelkowski S, Chen Y, Christensen N, Chung CT, Clark D, Clark J, Clayton JH, Cleva F, Coccia E, Cokelaer T, Colacino CN, Colas J, Colla A, Colombini M, Conte R, Cook D, Corbitt TR, Corda C, Cornish N, Corsi A, Coulon JP, Coward D, Coyne DC, Creighton JD, Creighton TD, Cruise AM, Culter RM, Cumming A, Cunningham L, Cuoco E, Danilishin SL, D'Antonio S, Danzmann K, Dari A, Dattilo V, Daudert B, Davier M, Davies G, Daw EJ, Day R, De Rosa R, Debra D, Degallaix J, Del Prete M, Dergachev V, Desai S, Desalvo R, Dhurandhar S, Di Fiore L, Di Lieto A, Di Paolo Emilio M, Di Virgilio A, Díaz M, Dietz A, Donovan F, Dooley KL, Doomes EE, Drago M, Drever RW, Dueck J, Duke I, Dumas JC, Dwyer JG, Echols C, Edgar M, Effler A, Ehrens P, Ely G, Espinoza E, Etzel T, Evans M, Evans T, Fafone V, Fairhurst S, Faltas Y, Fan Y, Fazi D, Fehrmann H, Ferrante I, Fidecaro F, Finn LS, Fiori I, Flaminio R, Flasch K, Foley S, Forrest C, Fotopoulos N, Fournier JD, Franc J, Franzen A, Frasca S, Frasconi F, Frede M, Frei M, Frei Z, Freise A, Frey R, Fricke T, Fritschel P, Frolov VV, Fyffe M, Galdi V, Gammaitoni L, Garofoli JA, Garufi F, Genin E, Gennai A, Gholami I, Giaime JA, Giampanis S, Giardina KD, Giazotto A, Goda K, Goetz E, Goggin LM, González G, Gorodetsky ML, Gobler S, Gouaty R, Granata M, Granata V, Grant A, Gras S, Gray C, Gray M, Greenhalgh RJ, Gretarsson AM, Greverie C, Grimaldi F, Grosso R, Grote H, Grunewald S, Guenther M, Guidi G, Gustafson EK, Gustafson R, Hage B, Hallam JM, Hammer D, Hammond GD, Hanna C, Hanson J, Harms J, Harry GM, Harry IW, Harstad ED, Haughian K, Hayama K, Heefner J, Heitmann H, Hello P, Heng IS, Heptonstall A, Hewitson M, Hild S, Hirose E, Hoak D, Hodge KA, Holt K, Hosken DJ, Hough J, Hoyland D, Huet D, Hughey B, Huttner SH, Ingram DR, Isogai T, Ito M, Ivanov A, Johnson B, Johnson WW, Jones DI, Jones G, Jones R, Sancho de la Jordana L, Ju L, Kalmus P, Kalogera V, Kandhasamy S, Kanner J, Kasprzyk D, Katsavounidis E, Kawabe K, Kawamura S, Kawazoe F, Kells W, Keppel DG, Khalaidovski A, Khalili FY, Khan R, Khazanov E, King P, Kissel JS, Klimenko S, Kokeyama K, Kondrashov V, Kopparapu R, Koranda S, Kozak D, Krishnan B, Kumar R, Kwee P, La Penna P, Lam PK, Landry M, Lantz B, Laval M, Lazzarini A, Lei H, Lei M, Leindecker N, Leonor I, Leroy N, Letendre N, Li C, Lin H, Lindquist PE, Littenberg TB, Lockerbie NA, Lodhia D, Longo M, Lorenzini M, Loriette V, Lormand M, Losurdo G, Lu P, Lubinski M, Lucianetti A, Lück H, Machenschalk B, Macinnis M, Mackowski JM, Mageswaran M, Mailand K, Majorana E, Man N, Mandel I, Mandic V, Mantovani M, Marchesoni F, Marion F, Márka S, Márka Z, Markosyan A, Markowitz J, Maros E, Marque J, Martelli F, Martin IW, Martin RM, Marx JN, Mason K, Masserot A, Matichard F, Matone L, Matzner RA, Mavalvala N, McCarthy R, McClelland DE, McGuire SC, McHugh M, McIntyre G, McKechan DJ, McKenzie K, Mehmet M, Melatos A, Melissinos AC, Mendell G, Menéndez DF, Menzinger F, Mercer RA, Meshkov S, Messenger C, Meyer MS, Michel C, Milano L, Miller J, Minelli J, Minenkov Y, Mino Y, Mitrofanov VP, Mitselmakher G, Mittleman R, Miyakawa O, Moe B, Mohan M, Mohanty SD, Mohapatra SR, Moreau J, Moreno G, Morgado N, Morgia A, Morioka T, Mors K, Mosca S, Mossavi K, Mours B, Mowlowry C, Mueller G, Muhammad D, Mühlen HZ, Mukherjee S, Mukhopadhyay H, Mullavey A, Müller-Ebhardt H, Munch J, Murray PG, Myers E, Myers J, Nash T, Nelson J, Neri I, Newton G, Nishizawa A, Nocera F, Numata K, Ochsner E, O'Dell J, Ogin GH, O'Reilly B, O'Shaughnessy R, Ottaway DJ, Ottens RS, Overmier H, Owen BJ, Pagliaroli G, Palomba C, Pan Y, Pankow C, Paoletti F, Papa MA, Parameshwaraiah V, Pardi S, Pasqualetti A, Passaquieti R, Passuello D, Patel P, Pedraza M, Penn S, Perreca A, Persichetti G, Pichot M, Piergiovanni F, Pierro V, Pinard L, Pinto IM, Pitkin M, Pletsch HJ, Plissi MV, Poggiani R, Postiglione F, Principe M, Prix R, Prodi GA, Prokhorov L, Punken O, Punturo M, Puppo P, Putten Sv, Quetschke V, Raab FJ, Rabaste O, Rabeling DS, Radkins H, Raffai P, Raics Z, Rainer N, Rakhmanov M, Rapagnani P, Raymond V, Re V, Reed CM, Reed T, Regimbau T, Rehbein H, Reid S, Reitze DH, Ricci F, Riesen R, Riles K, Rivera B, Roberts P, Robertson NA, Robinet F, Robinson C, Robinson EL, Rocchi A, Roddy S, Rolland L, Rollins J, Romano JD, Romano R, Romie JH, Röver C, Rowan S, Rüdiger A, Ruggi P, Russell P, Ryan K, Sakata S, Salemi F, Sandberg V, Sannibale V, Santamaría L, Saraf S, Sarin P, Sassolas B, Sathyaprakash BS, Sato S, Satterthwaite M, Saulson PR, Savage R, Savov P, Scanlan M, Schilling R, Schnabel R, Schofield R, Schulz B, Schutz BF, Schwinberg P, Scott J, Scott SM, Searle AC, Sears B, Seifert F, Sellers D, Sengupta AS, Sentenac D, Sergeev A, Shapiro B, Shawhan P, Shoemaker DH, Sibley A, Siemens X, Sigg D, Sinha S, Sintes AM, Slagmolen BJ, Slutsky J, van der Sluys MV, Smith JR, Smith MR, Smith ND, Somiya K, Sorazu B, Stein A, Stein LC, Steplewski S, Stochino A, Stone R, Strain KA, Strigin S, Stroeer A, Sturani R, Stuver AL, Summerscales TZ, Sun KX, Sung M, Sutton PJ, Swinkels BL, Szokoly GP, Talukder D, Tang L, Tanner DB, Tarabrin SP, Taylor JR, Taylor R, Terenzi R, Thacker J, Thorne KA, Thorne KS, Thüring A, Tokmakov KV, Toncelli A, Tonelli M, Torres C, Torrie C, Tournefier E, Travasso F, Traylor G, Trias M, Trummer J, Ugolini D, Ulmen J, Urbanek K, Vahlbruch H, Vajente G, Vallisneri M, Vass S, Vaulin R, Vavoulidis M, Vecchio A, Vedovato G, van Veggel AA, Veitch J, Veitch P, Veltkamp C, Verkindt D, Vetrano F, Viceré A, Villar A, Vinet JY, Vocca H, Vorvick C, Vyachanin SP, Waldman SJ, Wallace L, Ward H, Ward RL, Was M, Weidner A, Weinert M, Weinstein AJ, Weiss R, Wen L, Wen S, Wette K, Whelan JT, Whitcomb SE, Whiting BF, Wilkinson C, Willems PA, Williams HR, Williams L, Willke B, Wilmut I, Winkelmann L, Winkler W, Wipf CC, Wiseman AG, Woan G, Wooley R, Worden J, Wu W, Yakushin I, Yamamoto H, Yan Z, Yoshida S, Yvert M, Zanolin M, Zhang J, Zhang L, Zhao C, Zotov N, Zucker ME, Zweizig J.

Nature. 2009 Aug 20;460(7258):990-4. doi: 10.1038/nature08278.

PMID:
19693079
18.

All-sky LIGO search for periodic gravitational waves in the early fifth-science-run data.

Abbott BP, Abbott R, Adhikari R, Ajith P, Allen B, Allen G, Amin RS, Anderson SB, Anderson WG, Arain MA, Araya M, Armandula H, Armor P, Aso Y, Aston S, Aufmuth P, Aulbert C, Babak S, Baker P, Ballmer S, Bantilan H, Barish BC, Barker C, Barker D, Barr B, Barriga P, Barsotti L, Barton MA, Bartos I, Bassiri R, Bastarrika M, Behnke B, Benacquista M, Betzwieser J, Beyersdorf PT, Bilenko IA, Billingsley G, Biswas R, Black E, Blackburn JK, Blackburn L, Blair D, Bland B, Bodiya TP, Bogue L, Bork R, Boschi V, Bose S, Brady PR, Braginsky VB, Brau JE, Brinkmann M, Brooks AF, Brown DA, Brunet G, Bullington A, Buonanno A, Burmeister O, Byer RL, Cadonati L, Cagnoli G, Camp JB, Cannizzo J, Cannon KC, Cao J, Cardenas L, Cardoso V, Caride S, Casebolt T, Castaldi G, Caudill S, Cavaglià M, Cepeda C, Chalkley E, Charlton P, Chatterji S, Chelkowski S, Chen Y, Christensen N, Clark D, Clark J, Clayton JH, Cokelaer T, Conte R, Cook D, Corbitt TR, Cornish N, Coyne DC, Creighton JD, Creighton TD, Cruise AM, Cumming A, Cunningham L, Cutler RM, Danzmann K, Daudert B, Davies G, Debra D, Degallaix J, Dergachev V, Desai S, Desalvo R, Dhurandhar S, Díaz M, Dickson J, Dietz A, Donovan F, Dooley KL, Doomes EE, Drever RW, Duke I, Dumas JC, Dwyer J, Echols C, Edgar M, Effler A, Ehrens P, Ely G, Espinoza E, Etzel T, Evans M, Evans T, Fairhurst S, Faltas Y, Fan Y, Fazi D, Fejer MM, Finn LS, Flasch K, Foley S, Forrest C, Fotopoulos N, Franzen A, Frei Z, Freise A, Frey R, Fricke TT, Fritschel P, Frolov VV, Fyffe M, Garofoli JA, Gholami I, Giaime JA, Giampanis S, Giardina KD, Goda K, Goetz E, Goggin LM, González G, Gossler S, Gouaty R, Grant A, Gras S, Gray C, Gray M, Greenhalgh RJ, Gretarsson AM, Grimaldi F, Grosso R, Grote H, Grunewald S, Guenther M, Gustafson EK, Gustafson R, Hage B, Hallam JM, Hanna C, Hanson J, Harms J, Harry GM, Harstad ED, Haughian E, Hayama K, Hayler T, Heefner J, Heng IS, Heptonstall A, Hewitson M, Hild S, Hirose E, Hoak D, Holt K, Hosken D, Hough J, Huttner SH, Ingram D, Ito M, Ivanov A, Johnson B, Johnson WW, Jones DI, Jones G, Jones R, Ju L, Kalmus P, Kalogera V, Kamat S, Kanner J, Kasprzyk D, Katsavounidis E, Kawabe K, Kawamura S, Kawazoe F, Kells W, Keppel DG, Khalaidovski A, Khalili FY, Khan R, Khazanov E, King P, Kissel JS, Klimenko S, Kocsis B, Kokeyama K, Kondrashov V, Kopparapu R, Koranda S, Kozak D, Kozhevatov I, Krishnan B, Kwee P, Landry M, Lantz B, Lazzarini A, Lei M, Leonor I, Li C, Lin H, Lindquist PE, Littenberg TB, Lockerbie NA, Lodhia D, Lormand M, Lu P, Lubinski M, Lucianetti A, Lück H, Machenschalk B, Macinnis M, Mageswaran M, Mailand K, Mandel I, Mandic V, Márka S, Márka Z, Markosyan A, Markowitz J, Maros E, Martin IW, Martin RM, Marx JN, Mason K, Matichard F, Matone L, Matzner R, Mavalvala N, McCarthy R, McClelland DE, McGuire SC, McHugh M, McIntyre G, McKechan D, McKenzie K, Mehmet M, Melissinos A, Mendell G, Mercer RA, Meshkov S, Messenger CJ, Meyers D, Miller A, Miller J, Minelli J, Mitra S, Mitrofanov VP, Mitselmakher G, Mittleman R, Miyakawa O, Moe B, Mohanty SD, Moreno G, Mors K, Mossavi K, Mowlowry C, Mueller G, Muhammad D, Mukherjee S, Mukhopadhyay H, Mullavey A, Müller-Ebhardt H, Munch J, Murray PG, Myers E, Myers J, Nash T, Nelson J, Newton G, Nishizawa A, Numata K, Ochsner E, O'Dell J, Ogin G, O'Reilly B, O'Shaughnessy R, Ottaway DJ, Ottens RS, Overmier H, Owen BJ, Pan Y, Pankow C, Papa MA, Parameshwaraiah V, Patel P, Pedraza M, Penn S, Perraca A, Petrie T, Pinto IM, Pitkin M, Pletsch HJ, Plissi MV, Postiglione F, Principe M, Prix R, Quetschke V, Raab FJ, Rabeling DS, Radkins H, Raffai P, Rainer N, Rakhmanov M, Ramsunder M, Reed T, Rehbein H, Reid S, Reitze DH, Riesen R, Riles K, Rivera B, Robertson NA, Robinson C, Robinson EL, Roddy S, Rogan AM, Rollins J, Romano JD, Romie JH, Rowan S, Rüdiger A, Ruet L, Russell P, Ryan K, Sakata S, Sancho de la Jordana L, Sandberg V, Sannibale V, Santamaria L, Saraf S, Sarin P, Sathyaprakash BS, Sato S, Saulson PR, Savage R, Savov P, Scanlan M, Schediwy SW, Schilling R, Schnabel R, Schofield R, Schutz BF, Schwinberg P, Scott J, Scott SM, Searle AC, Sears B, Seifert F, Sellers D, Sengupta AS, Sergeev A, Shapiro B, Shawhan P, Shoemaker DH, Sibley A, Siemens X, Sigg D, Sinha S, Sintes AM, Slagmolen BJ, Slutsky J, Smith JR, Smith MR, Smith ND, Somiya K, Sorazu B, Stein LC, Strain KA, Stuver A, Summerscales TZ, Sun KX, Sung M, Sutton PJ, Takahashi H, Tanner DB, Taylor R, Taylor R, Thacker J, Thorne KA, Thorne KS, Thüring A, Tokmakov KV, Torres C, Torrie C, Traylor G, Trias M, Ugolini D, Urbanek K, Vahlbruch H, Van Den Broeck C, van der Sluys MV, van Veggel AA, Vass S, Vaulin R, Vecchio A, Veitch JD, Veitch P, Villar A, Vorvick C, Vyachanin SP, Waldman SJ, Wallace L, Ward H, Ward RL, Weinert M, Weinstein AJ, Weiss R, Wen L, Wen S, Wette K, Whelan JT, Whitcomb SE, Whiting BF, Wilkinson C, Willems PA, Williams HR, Williams L, Willke B, Wilmut I, Winkler W, Wipf CC, Wiseman AG, Woan G, Wooley R, Worden J, Wu W, Yakushin I, Yamamoto H, Yan Z, Yoshida S, Zanolin M, Zhang J, Zhang L, Zhao C, Zotov N, Zucker ME, Zur Mühlen H, Zweizig J; LIGO Scientific Collaboration.

Phys Rev Lett. 2009 Mar 20;102(11):111102. Epub 2009 Mar 20.

PMID:
19392186
19.

Search for gravitational-wave bursts from soft gamma repeaters.

Abbott B, Abbott R, Adhikari R, Ajith P, Allen B, Allen G, Amin R, Anderson SB, Anderson WG, Arain MA, Araya M, Armandula H, Armor P, Aso Y, Aston S, Aufmuth P, Aulbert C, Babak S, Ballmer S, Bantilan H, Barish BC, Barker C, Barker D, Barr B, Barriga P, Barton MA, Bartos I, Bastarrika M, Bayer K, Betzwieser J, Beyersdorf PT, Bilenko IA, Billingsley G, Biswas R, Black E, Blackburn K, Blackburn L, Blair D, Bland B, Bodiya TP, Bogue L, Bork R, Boschi V, Bose S, Brady PR, Braginsky VB, Brau JE, Brinkmann M, Brooks A, Brown DA, Brunet G, Bullington A, Buonanno A, Burmeister O, Byer RL, Cadonati L, Cagnoli G, Camp JB, Cannizzo J, Cannon K, Cao J, Cardenas L, Casebolt T, Castaldi G, Cepeda C, Chalkley E, Charlton P, Chatterji S, Chelkowski S, Chen Y, Christensen N, Clark D, Clark J, Cokelaer T, Conte R, Cook D, Corbitt T, Coyne D, Creighton JD, Cumming A, Cunningham L, Cutler RM, Dalrymple J, Danzmann K, Davies G, Debra D, Degallaix J, Degree M, Dergachev V, Desai S, Desalvo R, Dhurandhar S, Díaz M, Dickson J, Dietz A, Donovan F, Dooley KL, Doomes EE, Drever RW, Duke I, Dumas JC, Dupuis RJ, Dwyer JG, Echols C, Effler A, Ehrens P, Espinoza E, Etzel T, Evans T, Fairhurst S, Fan Y, Fazi D, Fehrmann H, Fejer MM, Finn LS, Flasch K, Fotopoulos N, Freise A, Frey R, Fricke T, Fritschel P, Frolov VV, Fyffe M, Garofoli J, Gholami I, Giaime JA, Giampanis S, Giardina KD, Goda K, Goetz E, Goggin L, González G, Gossler S, Gouaty R, Grant A, Gras S, Gray C, Gray M, Greenhalgh RJ, Gretarsson AM, Grimaldi F, Grosso R, Grote H, Grunewald S, Guenther M, Gustafson EK, Gustafson R, Hage B, Hallam JM, Hammer D, Hanna C, Hanson J, Harms J, Harry G, Harstad E, Hayama K, Hayler T, Heefner J, Heng IS, Hennessy M, Heptonstall A, Hewitson M, Hild S, Hirose E, Hoak D, Hosken D, Hough J, Huttner SH, Ingram D, Ito M, Ivanov A, Johnson B, Johnson WW, Jones DI, Jones G, Jones R, Ju L, Kalmus P, Kalogera V, Kamat S, Kanner J, Kasprzyk D, Katsavounidis E, Kawabe K, Kawamura S, Kawazoe F, Kells W, Keppel DG, Khalili FY, Khan R, Khazanov E, Kim C, King P, Kissel JS, Klimenko S, Kokeyama K, Kondrashov V, Kopparapu RK, Kozak D, Kozhevatov I, Krishnan B, Kwee P, Lam PK, Landry M, Lang MM, Lantz B, Lazzarini A, Lei M, Leindecker N, Leonhardt V, Leonor I, Libbrecht K, Lin H, Lindquist P, Lockerbie NA, Lodhia D, Lormand M, Lu P, Lubinski M, Lucianetti A, Lück H, Machenschalk B, Macinnis M, Mageswaran M, Mailand K, Mandic V, Márka S, Márka Z, Markosyan A, Markowitz J, Maros E, Martin I, Martin RM, Marx JN, Mason K, Matichard F, Matone L, Matzner R, Mavalvala N, McCarthy R, McClelland DE, McGuire SC, McHugh M, McIntyre G, McIvor G, McKechan D, McKenzie K, Meier T, Melissinos A, Mendell G, Mercer RA, Meshkov S, Messenger CJ, Meyers D, Miller J, Minelli J, Mitra S, Mitrofanov VP, Mitselmakher G, Mittleman R, Miyakawa O, Moe B, Mohanty S, Moreno G, Mossavi K, Mowlowry C, Mueller G, Mukherjee S, Mukhopadhyay H, Müller-Ebhardt H, Munch J, Murray P, Myers E, Myers J, Nash T, Nelson J, Newton G, Nishizawa A, Numata K, O'Dell J, Ogin G, O'Reilly B, O'Shaughnessy R, Ottaway DJ, Ottens RS, Overmier H, Owen BJ, Pan Y, Pankow C, Papa MA, Parameshwaraiah V, Patel P, Pedraza M, Penn S, Perreca A, Petrie T, Pinto IM, Pitkin M, Pletsch HJ, Plissi MV, Postiglione F, Principe M, Prix R, Quetschke V, Raab F, Rabeling DS, Radkins H, Rainer N, Rakhmanov M, Ramsunder M, Rehbein H, Reid S, Reitze DH, Riesen R, Riles K, Rivera B, Robertson NA, Robinson C, Robinson EL, Roddy S, Rodriguez A, Rogan AM, Rollins J, Romano JD, Romie J, Route R, Rowan S, Rüdiger A, Ruet L, Russell P, Ryan K, Sakata S, Samidi M, de la Jordana LS, Sandberg V, Sannibale V, Saraf S, Sarin P, Sathyaprakash BS, Sato S, Saulson PR, Savage R, Savov P, Schediwy SW, Schilling R, Schnabel R, Schofield R, Schutz BF, Schwinberg P, Scott SM, Searle AC, Sears B, Seifert F, Sellers D, Sengupta AS, Shawhan P, Shoemaker DH, Sibley A, Siemens X, Sigg D, Sinha S, Sintes AM, Slagmolen BJ, Slutsky J, Smith JR, Smith MR, Smith ND, Somiya K, Sorazu B, Stein LC, Stochino A, Stone R, Strain KA, Strom DM, Stuver A, Summerscales TZ, Sun KX, Sung M, Sutton PJ, Takahashi H, Tanner DB, Taylor R, Taylor R, Thacker J, Thorne KA, Thorne KS, Thüring A, Tokmakov KV, Torres C, Torrie C, Traylor G, Trias M, Tyler W, Ugolini D, Ulmen J, Urbanek K, Vahlbruch H, Van Den Broeck C, van der Sluys M, Vass S, Vaulin R, Vecchio A, Veitch J, Veitch P, Villar A, Vorvick C, Vyachanin SP, Waldman SJ, Wallace L, Ward H, Ward R, Weinert M, Weinstein A, Weiss R, Wen S, Wette K, Whelan JT, Whitcomb SE, Whiting BF, Wilkinson C, Willems PA, Williams HR, Williams L, Willke B, Wilmut I, Winkler W, Wipf CC, Wiseman AG, Woan G, Wooley R, Worden J, Wu W, Yakushin I, Yamamoto H, Yan Z, Yoshida S, Zanolin M, Zhang J, Zhang L, Zhao C, Zotov N, Zucker M, Zweizig J; LIGO Scientific Collaboration, Barthelmy S, Gehrels N, Hurley KC, Palmer D.

Phys Rev Lett. 2008 Nov 21;101(21):211102. Epub 2008 Nov 21.

PMID:
19113401
20.

Upper limits on a stochastic background of gravitational waves.

Abbott B, Abbott R, Adhikari R, Agresti J, Ajith P, Allen B, Allen J, Amin R, Anderson SB, Anderson WG, Araya M, Armandula H, Ashley M, Aulbert C, Babak S, Balasubramanian R, Ballmer S, Barish BC, Barker C, Barker D, Barton MA, Bayer K, Belczynski K, Betzwieser J, Bhawal B, Bilenko IA, Billingsley G, Black E, Blackburn K, Blackburn L, Bland B, Bogue L, Bork R, Bose S, Brady PR, Braginsky VB, Brau JE, Brown DA, Buonanno A, Busby D, Butler WE, Cadonati L, Cagnoli G, Camp JB, Cannizzo J, Cannon K, Cardenas L, Carter K, Casey MM, Charlton P, Chatterji S, Chen Y, Chin D, Christensen N, Cokelaer T, Colacino CN, Coldwell R, Cook D, Corbitt T, Coyne D, Creighton JD, Creighton TD, Dalrymple J, D'Ambrosio E, Danzmann K, Davies G, DeBra D, Dergachev V, Desai S, DeSalvo R, Dhurandar S, Díaz M, Di Credico A, Drever RW, Dupuis RJ, Ehrens P, Etzel T, Evans M, Evans T, Fairhurst S, Finn LS, Franzen KY, Frey RE, Fritschel P, Frolov VV, Fyffe M, Ganezer KS, Garofoli J, Gholami I, Giaime JA, Goda K, Goggin L, González G, Gray C, Gretarsson AM, Grimmett D, Grote H, Grunewald S, Guenther M, Gustafson R, Hamilton WO, Hanna C, Hanson J, Hardham C, Harry G, Heefner J, Heng IS, Hewitson M, Hindman N, Hoang P, Hough J, Hua W, Ito M, Itoh Y, Ivanov A, Johnson B, Johnson WW, Jones DI, Jones G, Jones L, Kalogera V, Katsavounidis E, Kawabe K, Kawamura S, Kells W, Khan A, Kim C, King P, Klimenko S, Koranda S, Kozak D, Krishnan B, Landry M, Lantz B, Lazzarini A, Lei M, Leonor I, Libbrecht K, Lindquist P, Liu S, Lormand M, Lubinski M, Lück H, Luna M, Machenschalk B, MacInnis M, Mageswaran M, Mailand K, Malec M, Mandic V, Marka S, Maros E, Mason K, Matone L, Mavalvala N, McCarthy R, McClelland DE, McHugh M, McNabb JW, Melissinos A, Mendell G, Mercer RA, Meshkov S, Messaritaki E, Messenger C, Mikhailov E, Mitra S, Mitrofanov VP, Mitselmakher G, Mittleman R, Miyakawa O, Mohanty S, Moreno G, Mossavi K, Mueller G, Mukherjee S, Myers E, Myers J, Nash T, Nocera F, Noel JS, O'Reilly B, O'Shaughnessy R, Ottaway DJ, Overmier H, Owen BJ, Pan Y, Papa MA, Parameshwaraiah V, Parameswariah C, Pedraza M, Penn S, Pitkin M, Prix R, Quetschke V, Raab F, Radkins H, Rahkola R, Rakhmanov M, Rawlins K, Ray-Majumder S, Re V, Regimbau T, Reitze DH, Riesen R, Riles K, Rivera B, Robertson DI, Robertson NA, Robinson C, Roddy S, Rodriguez A, Rollins J, Romano JD, Romie J, Rowan S, Rüdiger A, Ruet L, Russell P, Ryan K, Sandberg V, Sanders GH, Sannibale V, Sarin P, Sathyaprakash BS, Saulson PR, Savage R, Sazonov A, Schilling R, Schofield R, Schutz BF, Schwinberg P, Scott SM, Seader SE, Searle AC, Sears B, Sellers D, Sengupta AS, Shawhan P, Shoemaker DH, Sibley A, Siemens X, Sigg D, Sintes AM, Smith J, Smith MR, Spjeld O, Strain KA, Strom DM, Stuver A, Summerscales T, Sung M, Sutton PJ, Tanner DB, Taylor R, Thorne KA, Thorne KS, Tokmakov KV, Torres C, Torrie C, Traylor G, Tyler W, Ugolini D, Ungarelli C, Vallisneri M, van Putten M, Vass S, Vecchio A, Veitch J, Vorvick C, Vyachanin SP, Wallace L, Ward H, Ward R, Watts K, Webber D, Weiland U, Weinstein A, Weiss R, Wen S, Wette K, Whelan JT, Whitcomb SE, Whiting BF, Wiley S, Wilkinson C, Willems PA, Willke B, Wilson A, Winkler W, Wise S, Wiseman AG, Woan G, Woods D, Wooley R, Worden J, Yakushin I, Yamamoto H, Yoshida S, Zanolin M, Zhang L, Zotov N, Zucker M, Zweizig J; LIGO Scientific Collaboration.

Phys Rev Lett. 2005 Nov 25;95(22):221101. Epub 2005 Nov 22.

PMID:
16384203
21.

Limits on gravitational-wave emission from selected pulsars using LIGO data.

Abbott B, Abbott R, Adhikari R, Ageev A, Allen B, Amin R, Anderson SB, Anderson WG, Araya M, Armandula H, Ashley M, Asiri F, Aufmuth P, Aulbert C, Babak S, Balasubramanian R, Ballmer S, Barish BC, Barker C, Barker D, Barnes M, Barr B, Barton MA, Bayer K, Beausoleil R, Belczynski K, Bennett R, Berukoff SJ, Betzwieser J, Bhawal B, Bilenko IA, Billingsley G, Black E, Blackburn K, Blackburn L, Bland B, Bochner B, Bogue L, Bork R, Bose S, Brady PR, Braginsky VB, Brau JE, Brown DA, Bullington A, Bunkowski A, Buonanno A, Burgess R, Busby D, Butler WE, Byer RL, Cadonati L, Cagnoli G, Camp JB, Cantley CA, Cardenas L, Carter K, Casey MM, Castiglione J, Chandler A, Chapsky J, Charlton P, Chatterji S, Chelkowski S, Chen Y, Chickarmane V, Chin D, Christensen N, Churches D, Cokelaer T, Colacino C, Coldwell R, Coles M, Cook D, Corbitt T, Coyne D, Creighton JD, Creighton TD, Crooks DR, Csatorday P, Cusack BJ, Cutler C, D'Ambrosio E, Danzmann K, Daw E, DeBra D, Delker T, Dergachev V, DeSalvo R, Dhurandhar S, Di Credico A, Díaz M, Ding H, Drever RW, Dupuis RJ, Edlund JA, Ehrens P, Elliffe EJ, Etzel T, Evans M, Evans T, Fairhurst S, Fallnich C, Farnham D, Fejer MM, Findley T, Fine M, Finn LS, Franzen KY, Freise A, Frey R, Fritschel P, Frolov VV, Fyffe M, Ganezer KS, Garofoli J, Giaime JA, Gillespie A, Goda K, González G, Gossler S, Grandclément P, Grant A, Gray C, Gretarsson AM, Grimmett D, Grote H, Grunewald S, Guenther M, Gustafson E, Gustafson R, Hamilton WO, Hammond M, Hanson J, Hardham C, Harms J, Harry G, Hartunian A, Heefner J, Hefetz Y, Heinzel G, Heng IS, Hennessy M, Hepler N, Heptonstall A, Heurs M, Hewitson M, Hild S, Hindman N, Hoang P, Hough J, Hrynevych M, Hua W, Ito M, Itoh Y, Ivanov A, Jennrich O, Johnson B, Johnson WW, Johnston WR, Jones DI, Jones L, Jungwirth D, Kalogera V, Katsavounidis E, Kawabe K, Kawamura S, Kells W, Kern J, Khan A, Killbourn S, Killow CJ, Kim C, King C, King P, Klimenko S, Koranda S, Kötter K, Kovalik J, Kozak D, Krishnan B, Landry M, Langdale J, Lantz B, Lawrence R, Lazzarini A, Lei M, Leonor I, Libbrecht K, Libson A, Lindquist P, Liu S, Logan J, Lormand M, Lubinski M, Lück H, Lyons TT, Machenschalk B, MacInnis M, Mageswaran M, Mailand K, Majid W, Malec M, Mann F, Marin A, Márka S, Maros E, Mason J, Mason K, Matherny O, Matone L, Mavalvala N, McCarthy R, McClelland DE, McHugh M, McNabb JW, Mendell G, Mercer RA, Meshkov S, Messaritaki E, Messenger C, Mitrofanov VP, Mitselmakher G, Mittleman R, Miyakawa O, Miyoki S, Mohanty S, Moreno G, Mossavi K, Mueller G, Mukherjee S, Murray P, Myers J, Nagano S, Nash T, Nayak R, Newton G, Nocera F, Noel JS, Nutzman P, Olson T, O'Reilly B, Ottaway DJ, Ottewill A, Ouimette D, Overmier H, Owen BJ, Pan Y, Papa MA, Parameshwaraiah V, Parameswariah C, Pedraza M, Penn S, Pitkin M, Plissi M, Prix R, Quetschke V, Raab F, Radkins H, Rahkola R, Rakhmanov M, Rao SR, Rawlins K, Ray-Majumder S, Re V, Redding D, Regehr MW, Regimbau T, Reid S, Reilly KT, Reithmaier K, Reitze DH, Richman S, Riesen R, Riles K, Rivera B, Rizzi A, Robertson DI, Robertson NA, Robison L, Roddy S, Rollins J, Romano JD, Romie J, Rong H, Rose D, Rotthoff E, Rowan S, Rüdiger A, Russell P, Ryan K, Salzman I, Sandberg V, Sanders GH, Sannibale V, Sathyaprakash B, Saulson PR, Savage R, Sazonov A, Schilling R, Schlaufman K, Schmidt V, Schnabel R, Schofield R, Schutz BF, Schwinberg P, Scott SM, Seader SE, Searle AC, Sears B, Seel S, Seifert F, Sengupta AS, Shapiro CA, Shawhan P, Shoemaker DH, Shu QZ, Sibley A, Siemens X, Sievers L, Sigg D, Sintes AM, Smith JR, Smith M, Smith MR, Sneddon PH, Spero R, Stapfer G, Steussy D, Strain KA, Strom D, Stuver A, Summerscales T, Sumner MC, Sutton PJ, Sylvestre J, Takamori A, Tanner DB, Tariq H, Taylor I, Taylor R, Taylor R, Thorne KA, Thorne KS, Tibbits M, Tilav S, Tinto M, Tokmakov KV, Torres C, Torrie C, Traylor G, Tyler W, Ugolini D, Ungarelli C, Vallisneri M, van Putten M, Vass S, Vecchio A, Veitch J, Vorvick C, Vyachanin SP, Wallace L, Walther H, Ward H, Ware B, Watts K, Webber D, Weidner A, Weiland U, Weinstein A, Weiss R, Welling H, Wen L, Wen S, Whelan JT, Whitcomb SE, Whiting BF, Wiley S, Wilkinson C, Willems PA, Williams PR, Williams R, Willke B, Wilson A, Winjum BJ, Winkler W, Wise S, Wiseman AG, Woan G, Wooley R, Worden J, Wu W, Yakushin I, Yamamoto H, Yoshida S, Zaleski KD, Zanolin M, Zawischa I, Zhang L, Zhu R, Zotov N, Zucker M, Zweizig J, Kramer M, Lyne AG.

Phys Rev Lett. 2005 May 13;94(18):181103. Epub 2005 May 12.

PMID:
15904354

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