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Items: 1 to 50 of 68

1.

Prospecting Microbial Strains for Bioremediation and Probiotics Development for Metaorganism Research and Preservation.

Villela HDM, Vilela CLS, Assis JM, Varona N, Burke C, Coil DA, Eisen JA, Peixoto RS.

J Vis Exp. 2019 Oct 31;(152). doi: 10.3791/60238.

PMID:
31736494
2.

Host-associated microbiomes drive structure and function of marine ecosystems.

Wilkins LGE, Leray M, O'Dea A, Yuen B, Peixoto RS, Pereira TJ, Bik HM, Coil DA, Duffy JE, Herre EA, Lessios HA, Lucey NM, Mejia LC, Rasher DB, Sharp KH, Sogin EM, Thacker RW, Vega Thurber R, Wcislo WT, Wilbanks EG, Eisen JA.

PLoS Biol. 2019 Nov 11;17(11):e3000533. doi: 10.1371/journal.pbio.3000533. eCollection 2019 Nov.

3.

Comparison of Whole-Genome Sequences of Legionella pneumophila in Tap Water and in Clinical Strains, Flint, Michigan, USA, 2016.

Garner E, Brown CL, Schwake DO, Rhoads WJ, Arango-Argoty G, Zhang L, Jospin G, Coil DA, Eisen JA, Edwards MA, Pruden A.

Emerg Infect Dis. 2019 Nov;25(11):2013-2020. doi: 10.3201/eid2511.181032.

4.

Bacteria isolated from Bengal cat (Felis catus × Prionailurus bengalensis) anal sac secretions produce volatile compounds potentially associated with animal signaling.

Yamaguchi MS, Ganz HH, Cho AW, Zaw TH, Jospin G, McCartney MM, Davis CE, Eisen JA, Coil DA.

PLoS One. 2019 Sep 13;14(9):e0216846. doi: 10.1371/journal.pone.0216846. eCollection 2019.

5.

Network analysis to evaluate the impact of research funding on research community consolidation.

Hicks DJ, Coil DA, Stahmer CG, Eisen JA.

PLoS One. 2019 Jun 18;14(6):e0218273. doi: 10.1371/journal.pone.0218273. eCollection 2019.

6.

Genomes from bacteria associated with the canine oral cavity: A test case for automated genome-based taxonomic assignment.

Coil DA, Jospin G, Darling AE, Wallis C, Davis IJ, Harris S, Eisen JA, Holcombe LJ, O'Flynn C.

PLoS One. 2019 Jun 10;14(6):e0214354. doi: 10.1371/journal.pone.0214354. eCollection 2019.

7.

Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria.

Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA.

mSphere. 2019 Feb 20;4(1). pii: e00043-19. doi: 10.1128/mSphere.00043-19.

8.

Correction: A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2018 Feb 27;5. pii: e4029/correction-1. doi: 10.7717/peerj.4029/correction-1. eCollection 2018.

9.

A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2017 Dec 5;5:e4029. doi: 10.7717/peerj.4029. eCollection 2017. Erratum in: PeerJ. 2018 Feb 27;5:.

10.

Schrödinger's microbes: Tools for distinguishing the living from the dead in microbial ecosystems.

Emerson JB, Adams RI, Román CMB, Brooks B, Coil DA, Dahlhausen K, Ganz HH, Hartmann EM, Hsu T, Justice NB, Paulino-Lima IG, Luongo JC, Lymperopoulou DS, Gomez-Silvan C, Rothschild-Mancinelli B, Balk M, Huttenhower C, Nocker A, Vaishampayan P, Rothschild LJ.

Microbiome. 2017 Aug 16;5(1):86. doi: 10.1186/s40168-017-0285-3. Review.

11.

Gut Check: The evolution of an educational board game.

Coil DA, Ettinger CL, Eisen JA.

PLoS Biol. 2017 Apr 28;15(4):e2001984. doi: 10.1371/journal.pbio.2001984. eCollection 2017 Apr.

13.

Draft Genome Sequence of Propionibacterium avidum Strain UCD-PD2 Isolated from a Feline Anal Sac.

Dahms PA, Martin AL, Ganz HH, Eisen JA, Coil DA.

Genome Announc. 2017 Mar 23;5(12). pii: e00034-17. doi: 10.1128/genomeA.00034-17.

14.

Genomic attributes of extended-spectrum β-lactamase-producing Escherichia coli isolated from patients in Lebanon.

Tokajian S, Salloum T, Eisen JA, Jospin G, Farra A, Mokhbat JE, Coil DA.

Future Microbiol. 2017 Mar;12:213-226. doi: 10.2217/fmb-2017-0171. Epub 2017 Feb 27.

PMID:
28262042
15.

Draft Genome Sequences of Dermacoccus nishinomiyaensis Strains UCD-KPL2534 and UCD-KPL2528 Isolated from an Indoor Track Facility.

Klein BA, Lemon KP, Gajare P, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 23;5(8). pii: e01652-16. doi: 10.1128/genomeA.01652-16.

16.

Draft Genome Sequence of Arthrobacter sp. Strain UCD-GKA (Phylum Actinobacteria).

Kincheloe GN, Eisen JA, Coil DA.

Genome Announc. 2017 Feb 9;5(6). pii: e01599-16. doi: 10.1128/genomeA.01599-16.

18.

Draft Genome Sequence of Enterococcus faecalis Strain UCD-PD3.

De Vries DR, Martin AL, Ganz HH, Eisen JA, Coil DA.

Genome Announc. 2016 Dec 15;4(6). pii: e01386-16. doi: 10.1128/genomeA.01386-16.

19.

Genome Analysis of Streptococcus pyogenes Associated with Pharyngitis and Skin Infections.

Ibrahim J, Eisen JA, Jospin G, Coil DA, Khazen G, Tokajian S.

PLoS One. 2016 Dec 15;11(12):e0168177. doi: 10.1371/journal.pone.0168177. eCollection 2016.

20.

Draft Genome Sequence of Curtobacterium sp. Strain UCD-KPL2560 (Phylum Actinobacteria).

Klein BA, Lemon KP, Faller LL, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 6;4(5). pii: e01040-16. doi: 10.1128/genomeA.01040-16.

21.

Draft Genome Sequence of Gordonia sp. Strain UCD-TK1 (Phylum Actinobacteria).

Koenigsaecker TM, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 13;4(5). pii: e01121-16. doi: 10.1128/genomeA.01121-16.

22.

Draft Genome Sequence of Tenacibaculum soleae UCD-KL19.

Lujan KM, Eisen JA, Coil DA.

Genome Announc. 2016 Oct 13;4(5). pii: e01120-16. doi: 10.1128/genomeA.01120-16.

23.

Draft Genome Sequences of Shewanella sp. Strain UCD-FRSP16_17 and Nine Vibrio Strains Isolated from Abalone Feces.

Vater A, Agbonavbare V, Carlin DA, Carruthers GM, Chac A, Doroud L, Farris SJ, Gudzeva M, Jospin G, Kintner JA, Knauss JP, Lor Y, Pechacek R, Rohner ES, Simmons SM, Verescshagina M, Wirawan CS, Zagal L, Coil DA.

Genome Announc. 2016 Sep 15;4(5). pii: e00977-16. doi: 10.1128/genomeA.00977-16.

24.

Draft Genome Sequence of Klebsiella pneumoniae UCD-JA29 Isolated from a Patient with Sepsis.

Alexiev A, Coil DA, Jospin G, Eisen JA, Adams JY.

Genome Announc. 2016 May 5;4(3). pii: e00234-16. doi: 10.1128/genomeA.00234-16.

25.

Growth of 48 built environment bacterial isolates on board the International Space Station (ISS).

Coil DA, Neches RY, Lang JM, Brown WE, Severance M, Cavalier D, Eisen JA.

PeerJ. 2016 Mar 22;4:e1842. doi: 10.7717/peerj.1842. eCollection 2016.

26.

Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment.

Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2016 Mar 17;4(2). pii: e00092-16. doi: 10.1128/genomeA.00092-16.

27.

Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina.

Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2016 Mar 10;4(2). pii: e00116-16. doi: 10.1128/genomeA.00116-16.

28.

Draft Genome Sequences of Two Vibrio splendidus Strains, Isolated from Seagrass Sediment.

Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2016 Feb 18;4(1). pii: e01769-15. doi: 10.1128/genomeA.01769-15.

29.

Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina.

Alexiev A, Krusor ML, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2016 Feb 18;4(1). pii: e00010-16. doi: 10.1128/genomeA.00010-16.

30.

Draft Genome Sequences of Acinetobacter baumannii Strains Harboring the blaNDM-1 Gene Isolated in Lebanon from Civilians Wounded during the Syrian Civil War.

Tokajian S, Eisen JA, Jospin G, Hamze M, Rafei R, Salloum T, Ibrahim J, Coil DA.

Genome Announc. 2016 Jan 28;4(1). pii: e01678-15. doi: 10.1128/genomeA.01678-15.

31.

Draft Genome Sequence of Klebsiella pneumoniae KGM-IMP216 Harboring blaCTX-M-15, blaDHA-1, blaTEM-1B, blaNDM-1, blaSHV-28, and blaOXA-1, Isolated from a Patient in Lebanon.

Tokajian S, Eisen JA, Jospin G, Matar G, Araj GF, Coil DA.

Genome Announc. 2016 Jan 28;4(1). pii: e01632-15. doi: 10.1128/genomeA.01632-15.

32.

Additional Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients.

Coil DA, Jospin G, Eisen JA, Adams JY.

Genome Announc. 2016 Jan 21;4(1). pii: e01614-15. doi: 10.1128/genomeA.01614-15.

33.

Porphyrobacter mercurialis sp. nov., isolated from a stadium seat and emended description of the genus Porphyrobacter.

Coil DA, Flanagan JC, Stump A, Alexiev A, Lang JM, Eisen JA.

PeerJ. 2015 Nov 12;3:e1400. doi: 10.7717/peerj.1400. eCollection 2015.

34.

Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes).

Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2015 Nov 19;3(6). pii: e01376-15. doi: 10.1128/genomeA.01376-15.

35.

Draft Genome Sequence of Bacillus safensis JPL-MERTA-8-2, Isolated from a Mars-Bound Spacecraft.

Coil DA, Benardini JN, Eisen JA.

Genome Announc. 2015 Nov 19;3(6). pii: e01360-15. doi: 10.1128/genomeA.01360-15.

36.

Draft Genome Sequence of Porphyrobacter mercurialis (sp. nov.) Strain Coronado.

Coil DA, Eisen JA.

Genome Announc. 2015 Nov 19;3(6). pii: e00856-15. doi: 10.1128/genomeA.00856-15.

37.

Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria).

Lee RD, Jospin G, Lang JM, Eisen JA, Coil DA.

Genome Announc. 2015 Nov 5;3(6). pii: e01276-15. doi: 10.1128/genomeA.01276-15.

38.

Draft Genome Sequence of Planomicrobium glaciei UCD-HAM (Phylum Firmicutes).

Betts MN, Jospin G, Eisen JA, Coil DA.

Genome Announc. 2015 Oct 15;3(5). pii: e01209-15. doi: 10.1128/genomeA.01209-15.

39.

Swabs to genomes: a comprehensive workflow.

Dunitz MI, Lang JM, Jospin G, Darling AE, Eisen JA, Coil DA.

PeerJ. 2015 May 14;3:e960. doi: 10.7717/peerj.960. eCollection 2015.

40.

Whole genome sequencing of extended-spectrum β-lactamase producing Klebsiella pneumoniae isolated from a patient in Lebanon.

Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA.

Front Cell Infect Microbiol. 2015 Apr 8;5:32. doi: 10.3389/fcimb.2015.00032. eCollection 2015.

41.

Draft genome sequences of 26 porphyromonas strains isolated from the canine oral microbiome.

Coil DA, Alexiev A, Wallis C, O'Flynn C, Deusch O, Davis I, Horsfall A, Kirkwood N, Jospin G, Eisen JA, Harris S, Darling AE.

Genome Announc. 2015 Apr 9;3(2). pii: e00187-15. doi: 10.1128/genomeA.00187-15.

42.

Draft Genome Sequences of Escherichia coli Strains Isolated from Septic Patients.

Dunitz MI, Coil DA, Jospin G, Eisen JA, Adams JY.

Genome Announc. 2014 Dec 18;2(6). pii: e01278-14. doi: 10.1128/genomeA.01278-14.

43.

Draft Genome Sequence of Rhizobium rhizogenes Strain ATCC 15834.

Kajala K, Coil DA, Brady SM.

Genome Announc. 2014 Oct 30;2(5). pii: e01108-14. doi: 10.1128/genomeA.01108-14.

44.

Draft Genome Sequence of the Pyridinediol-Fermenting Bacterium Synergistes jonesii 78-1.

Holland-Moritz HE, Coil DA, Badger JH, Dmitrov GI, Khouri H, Ward NL, Robb FT, Eisen JA.

Genome Announc. 2014 Aug 21;2(4). pii: e00833-14. doi: 10.1128/genomeA.00833-14.

45.

Draft Genome Sequence of the Endosymbiont "Candidatus Ruthia magnifica" UCD-CM (Phylum Proteobacteria).

Lee RD, Jospin G, Coil DA, Eisen JA.

Genome Announc. 2014 Jul 17;2(4). pii: e00717-14. doi: 10.1128/genomeA.00717-14.

46.

microBEnet: lessons learned from building an interdisciplinary scientific community in the online sphere.

Bik HM, Coil DA, Eisen JA.

PLoS Biol. 2014 Jun 17;12(6):e1001884. doi: 10.1371/journal.pbio.1001884. eCollection 2014 Jun. No abstract available.

47.

Complete Genome Sequence of Coprothermobacter proteolyticus DSM 5265.

Alexiev A, Coil DA, Badger JH, Enticknap J, Ward N, Robb FT, Eisen JA.

Genome Announc. 2014 May 15;2(3). pii: e00470-14. doi: 10.1128/genomeA.00470-14.

48.

Draft Genome Sequences of Streptococcus pyogenes Strains Associated with Throat and Skin Infections in Lebanon.

Tokajian S, Eisen JA, Jospin G, Coil DA.

Genome Announc. 2014 May 15;2(3). pii: e00358-14. doi: 10.1128/genomeA.00358-14.

49.

Draft Genome Sequence of Tatumella sp. Strain UCD-D_suzukii (Phylum Proteobacteria) Isolated from Drosophila suzukii Larvae.

Dunitz MI, James PM, Jospin G, Eisen JA, Coil DA, Chandler JA.

Genome Announc. 2014 Apr 24;2(2). pii: e00349-14. doi: 10.1128/genomeA.00349-14.

50.

Draft Genome Sequences of Extended-Spectrum β-Lactamase-Producing Escherichia coli Strains Isolated from Patients in Lebanon.

Tokajian S, Eisen JA, Jospin G, Farra A, Coil DA.

Genome Announc. 2014 Feb 20;2(1). pii: e00123-14. doi: 10.1128/genomeA.00123-14.

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