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Can emergency physicians perform extended compression ultrasound for the diagnosis of lower extremity deep vein thrombosis?

Situ-LaCasse E, Guirguis H, Friedman L, Patanwala AE, Cohen SE, Adhikari S.

World J Emerg Med. 2019;10(4):205-209. doi: 10.5847/wjem.j.1920-8642.2019.04.002.


Development of an Outpatient Palliative Care Protocol to Monitor Fidelity in the Emergency Medicine Palliative Care Access Trial.

Grudzen CR, Schmucker AM, Shim DJ, Ibikunle A, Cho J, Chung FR, Cohen SE; EMPallA Outpatient Investigators.

J Palliat Med. 2019 Sep;22(S1):66-71. doi: 10.1089/jpm.2019.0115.


Is the US Ready for Event-driven HIV Pre-exposure Prophylaxis?

Cohen SE, Kelley CF.

Clin Infect Dis. 2019 Aug 22. pii: ciz806. doi: 10.1093/cid/ciz806. [Epub ahead of print] No abstract available.


Implementation of pre-exposure prophylaxis at a community pharmacy through a collaborative practice agreement with San Francisco Department of Public Health.

Lopez MI, Cocohoba J, Cohen SE, Trainor N, Levy MM, Dong BJ.

J Am Pharm Assoc (2003). 2019 Aug 9. pii: S1544-3191(19)30328-0. doi: 10.1016/j.japh.2019.06.021. [Epub ahead of print]


Severe exacerbations in moderate-to-severe asthmatics are associated with increased pro-inflammatory and type 1 mediators in sputum and serum.

Ghebre MA, Pang PH, Desai D, Hargadon B, Newby C, Woods J, Rapley L, Cohen SE, Herath A, Gaillard EA, May RD, Brightling CE.

BMC Pulm Med. 2019 Aug 8;19(1):144. doi: 10.1186/s12890-019-0906-7.


Boosting NAD+ with a small molecule that activates NAMPT.

Gardell SJ, Hopf M, Khan A, Dispagna M, Hampton Sessions E, Falter R, Kapoor N, Brooks J, Culver J, Petucci C, Ma CT, Cohen SE, Tanaka J, Burgos ES, Hirschi JS, Smith SR, Sergienko E, Pinkerton AB.

Nat Commun. 2019 Jul 19;10(1):3241. doi: 10.1038/s41467-019-11078-z.


Structural insight into metallocofactor maturation in carbon monoxide dehydrogenase.

Wittenborn EC, Cohen SE, Merrouch M, Léger C, Fourmond V, Dementin S, Drennan CL.

J Biol Chem. 2019 Aug 30;294(35):13017-13026. doi: 10.1074/jbc.RA119.009610. Epub 2019 Jul 11.


HIV Seroconversion in the Era of Pharmacologic Prevention: A Case-Control Study at a San Francisco STD Clinic.

Johnson KA, Hessol NA, Kohn R, Nguyen TQ, Mara ES, Hsu L, Scheer S, Cohen SE.

J Acquir Immune Defic Syndr. 2019 Oct 1;82(2):159-165. doi: 10.1097/QAI.0000000000002107.


Stated and revealed preferences in companion animal choice.

Cohen SE, Todd PM.

Behav Res Methods. 2019 Aug;51(4):1498-1509. doi: 10.3758/s13428-019-01253-x.


A widely distributed diheme enzyme from Burkholderia that displays an atypically stable bis-Fe(IV) state.

Rizzolo K, Cohen SE, Weitz AC, López Muñoz MM, Hendrich MP, Drennan CL, Elliott SJ.

Nat Commun. 2019 Mar 7;10(1):1101. doi: 10.1038/s41467-019-09020-4.


Performance evaluation of the Bio-Rad Geenius HIV 1/2 supplemental assay.

Luo W, Sullivan V, Smith T, Peters PJ, Gay C, Westheimer E, Cohen SE, Owen SM, Masciotra S.

J Clin Virol. 2019 Feb;111:24-28. doi: 10.1016/j.jcv.2018.12.006. Epub 2018 Dec 19.


Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus.

Yang Y, Lam V, Adomako M, Simkovsky R, Jakob A, Rockwell NC, Cohen SE, Taton A, Wang J, Lagarias JC, Wilde A, Nobles DR, Brand JJ, Golden SS.

Proc Natl Acad Sci U S A. 2018 Dec 26;115(52):E12378-E12387. doi: 10.1073/pnas.1812871115. Epub 2018 Dec 14.


Acquisition of tenofovir-susceptible, emtricitabine-resistant HIV despite high adherence to daily pre-exposure prophylaxis: a case report.

Cohen SE, Sachdev D, Lee SA, Scheer S, Bacon O, Chen MJ, Okochi H, Anderson PL, Kearney MF, Coffey S, Scott H, Grant RM, Havlir D, Gandhi M.

Lancet HIV. 2018 Nov 29. pii: S2352-3018(18)30288-1. doi: 10.1016/S2352-3018(18)30288-1. [Epub ahead of print]


Evaluating the Impact of Housing Status on Gonorrhea and Chlamydia Screening in an HIV Primary Care Setting.

Clemenzi-Allen AA, Hartogensis W, Cohen SE, Gandhi M, Geng E, Christopoulos K.

Sex Transm Dis. 2019 Mar;46(3):153-158. doi: 10.1097/OLQ.0000000000000939.


Roles for ClpXP in regulating the circadian clock in Synechococcus elongatus.

Cohen SE, McKnight BM, Golden SS.

Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):E7805-E7813. doi: 10.1073/pnas.1800828115. Epub 2018 Jul 30.


Relationship Foraging: Does time spent searching predict relationship length?

Cohen SE, Todd PM.

Evol Behav Sci. 2018 Jul;12(3):139-151. doi: 10.1037/ebs0000131.


Airway Interleukin-33 and type 2 cytokines in adult patients with acute asthma.

Poulsen NN, Bjerregaard A, Khoo SK, Laing IA, Le Souëf P, Backer V, Rapley L, Cohen SE, Barrett L, Thompson P, Baltic S, Porsbjerg C.

Respir Med. 2018 Jul;140:50-56. doi: 10.1016/j.rmed.2018.05.016. Epub 2018 May 19.


Historical and Current Trends in the Epidemiology of Early Syphilis in San Francisco, 1955 to 2016.

Nguyen TQ, Kohn RP, Ng RC, Philip SS, Cohen SE.

Sex Transm Dis. 2018 Sep;45(9S Suppl 1):S55-S62. doi: 10.1097/OLQ.0000000000000870.


Patterns and Correlates of Participant Retention in a Multi-City Pre-Exposure Prophylaxis Demonstration Project.

Doblecki-Lewis S, Liu AY, Feaster DJ, Cohen SE, Elion R, Bacon O, Coleman M, Cardenas G, Kolber MA.

J Acquir Immune Defic Syndr. 2018 Sep 1;79(1):62-69. doi: 10.1097/QAI.0000000000001724.


Body/Selves and Beyond: Men's Narratives of Sexual Behavior on PrEP.

Hughes SD, Sheon N, Andrew EVW, Cohen SE, Doblecki-Lewis S, Liu AY.

Med Anthropol. 2018 Jul;37(5):387-400. doi: 10.1080/01459740.2017.1416608. Epub 2018 Jan 19.


HIV-1 persistence following extremely early initiation of antiretroviral therapy (ART) during acute HIV-1 infection: An observational study.

Henrich TJ, Hatano H, Bacon O, Hogan LE, Rutishauser R, Hill A, Kearney MF, Anderson EM, Buchbinder SP, Cohen SE, Abdel-Mohsen M, Pohlmeyer CW, Fromentin R, Hoh R, Liu AY, McCune JM, Spindler J, Metcalf-Pate K, Hobbs KS, Thanh C, Gibson EA, Kuritzkes DR, Siliciano RF, Price RW, Richman DD, Chomont N, Siliciano JD, Mellors JW, Yukl SA, Blankson JN, Liegler T, Deeks SG.

PLoS Med. 2017 Nov 7;14(11):e1002417. doi: 10.1371/journal.pmed.1002417. eCollection 2017 Nov.


Top Questions in ID: Pre-exposure Prophylaxis for HIV.

Krakower DS, Cohen SE, Mayer KH.

Open Forum Infect Dis. 2017 Aug 25;4(4):ofx185. doi: 10.1093/ofid/ofx185. eCollection 2017 Fall.


Changes in Kidney Function Associated With Daily Tenofovir Disoproxil Fumarate/Emtricitabine for HIV Preexposure Prophylaxis Use in the United States Demonstration Project.

Tang EC, Vittinghoff E, Anderson PL, Cohen SE, Doblecki-Lewis S, Bacon O, Coleman ME, Buchbinder SP, Chege W, Kolber MA, Elion R, Shlipak M, Liu AY.

J Acquir Immune Defic Syndr. 2018 Feb 1;77(2):193-198. doi: 10.1097/QAI.0000000000001566.


Hair levels of preexposure prophylaxis drugs measure adherence and are associated with renal decline among men/transwomen.

Gandhi M, Murnane PM, Bacchetti P, Elion R, Kolber MA, Cohen SE, Horng H, Louie A, Kuncze K, Koss CA, Anderson PL, Buchbinder S, Liu A.

AIDS. 2017 Oct 23;31(16):2245-2251. doi: 10.1097/QAD.0000000000001615.


Real-world performance of the new US HIV testing algorithm in medical settings.

Marson KG, Marlin R, Pham P, Cohen SE, Jones D, Roemer M, Peters PJ, Haller B, Pilcher CD.

J Clin Virol. 2017 Jun;91:73-78. doi: 10.1016/j.jcv.2017.04.003. Epub 2017 Apr 7.


Performance evaluation of the FDA-approved Determine™ HIV-1/2 Ag/Ab Combo assay using plasma and whole blood specimens.

Masciotra S, Luo W, Westheimer E, Cohen SE, Gay CL, Hall L, Pan Y, Peters PJ, Owen SM.

J Clin Virol. 2017 Jun;91:95-100. doi: 10.1016/j.jcv.2017.03.019. Epub 2017 Mar 24.


Performance evaluation of the point-of-care INSTI™ HIV-1/2 antibody test in early and established HIV infections.

Adams S, Luo W, Wesolowski L, Cohen SE, Peters PJ, Owen SM, Masciotra S.

J Clin Virol. 2017 Jun;91:90-94. doi: 10.1016/j.jcv.2017.03.012. Epub 2017 Mar 23.


Diagnosing acute HIV infection: The performance of quantitative HIV-1 RNA testing (viral load) in the 2014 laboratory testing algorithm.

Wu H, Cohen SE, Westheimer E, Gay CL, Hall L, Rose C, Hightow-Weidman LB, Gose S, Fu J, Peters PJ.

J Clin Virol. 2017 Aug;93:85-86. doi: 10.1016/j.jcv.2017.02.005. Epub 2017 Feb 15.


Structural basis of the day-night transition in a bacterial circadian clock.

Tseng R, Goularte NF, Chavan A, Luu J, Cohen SE, Chang YG, Heisler J, Li S, Michael AK, Tripathi S, Golden SS, LiWang A, Partch CL.

Science. 2017 Mar 17;355(6330):1174-1180. doi: 10.1126/science.aag2516. Epub 2017 Mar 16.


Healthcare Access and PrEP Continuation in San Francisco and Miami After the US PrEP Demo Project.

Doblecki-Lewis S, Liu A, Feaster D, Cohen SE, Cardenas G, Bacon O, Andrew E, Kolber MA.

J Acquir Immune Defic Syndr. 2017 Apr 15;74(5):531-538. doi: 10.1097/QAI.0000000000001236.


Brief Report: Informing Strategies to Build PrEP Capacity Among San Francisco Bay Area Clinicians.

Bacon O, Gonzalez R, Andrew E, Potter MB, Iñiguez JR, Cohen SE, Liu AY, Fuchs JD.

J Acquir Immune Defic Syndr. 2017 Feb 1;74(2):175-179. doi: 10.1097/QAI.0000000000001182.


Substrate Binding Mode and Molecular Basis of a Specificity Switch in Oxalate Decarboxylase.

Zhu W, Easthon LM, Reinhardt LA, Tu C, Cohen SE, Silverman DN, Allen KN, Richards NG.

Biochemistry. 2016 Apr 12;55(14):2163-73. doi: 10.1021/acs.biochem.6b00043. Epub 2016 Apr 4.


Successful Implementation of HIV Preexposure Prophylaxis: Lessons Learned From Three Clinical Settings.

Marcus JL, Volk JE, Pinder J, Liu AY, Bacon O, Hare CB, Cohen SE.

Curr HIV/AIDS Rep. 2016 Apr;13(2):116-24. doi: 10.1007/s11904-016-0308-x. Review.


Lymphogranuloma Venereum 2015: Clinical Presentation, Diagnosis, and Treatment.

Stoner BP, Cohen SE.

Clin Infect Dis. 2015 Dec 15;61 Suppl 8:S865-73. doi: 10.1093/cid/civ756. Review.


Preexposure Prophylaxis for HIV Infection Integrated With Municipal- and Community-Based Sexual Health Services.

Liu AY, Cohen SE, Vittinghoff E, Anderson PL, Doblecki-Lewis S, Bacon O, Chege W, Postle BS, Matheson T, Amico KR, Liegler T, Rawlings MK, Trainor N, Blue RW, Estrada Y, Coleman ME, Cardenas G, Feaster DJ, Grant R, Philip SS, Elion R, Buchbinder S, Kolber MA.

JAMA Intern Med. 2016 Jan;176(1):75-84. doi: 10.1001/jamainternmed.2015.4683.


A Cluster of Ocular Syphilis Cases - Seattle, Washington, and San Francisco, California, 2014-2015.

Woolston S, Cohen SE, Fanfair RN, Lewis SC, Marra CM, Golden MR.

MMWR Morb Mortal Wkly Rep. 2015 Oct 16;64(40):1150-1. doi: 10.15585/mmwr.mm6440a6. No abstract available.


Circadian Rhythms in Cyanobacteria.

Cohen SE, Golden SS.

Microbiol Mol Biol Rev. 2015 Dec;79(4):373-85. doi: 10.1128/MMBR.00036-15. Review.


A Microfluidic Platform for Long-Term Monitoring of Algae in a Dynamic Environment.

Luke CS, Selimkhanov J, Baumgart L, Cohen SE, Golden SS, Cookson NA, Hasty J.

ACS Synth Biol. 2016 Jan 15;5(1):8-14. doi: 10.1021/acssynbio.5b00094. Epub 2015 Sep 15.


Self-Management and Transition Readiness Assessment: Concurrent, Predictive and Discriminant Validation of the STARx Questionnaire.

Cohen SE, Hooper SR, Javalkar K, Haberman C, Fenton N, Lai H, Mahan JD, Massengill S, Kelly M, Cantú G, Medeiros M, Phillips A, Sawicki G, Wood D, Johnson M, Benton MH, Ferris M.

J Pediatr Nurs. 2015 Sep-Oct;30(5):668-76. doi: 10.1016/j.pedn.2015.05.006. Epub 2015 Jul 9.


Circadian rhythms. A protein fold switch joins the circadian oscillator to clock output in cyanobacteria.

Chang YG, Cohen SE, Phong C, Myers WK, Kim YI, Tseng R, Lin J, Zhang L, Boyd JS, Lee Y, Kang S, Lee D, Li S, Britt RD, Rust MJ, Golden SS, LiWang A.

Science. 2015 Jul 17;349(6245):324-8. doi: 10.1126/science.1260031. Epub 2015 Jun 25.


Authors' Reply: Race and the Public Health Impact Potential of Pre-Exposure Prophylaxis in the United States.

Cohen SE, Vittinghoff E, Doblecki-Lewis S, Coleman M, Bacon O, Elion R, Kolber MA, Buchbinder S, Liu AY.

J Acquir Immune Defic Syndr. 2015 Sep 1;70(1):e33-5. doi: 10.1097/QAI.0000000000000716. No abstract available.


Sexual Behavior, Risk Compensation, and HIV Prevention Strategies Among Participants in the San Francisco PrEP Demonstration Project: A Qualitative Analysis of Counseling Notes.

Carlo Hojilla J, Koester KA, Cohen SE, Buchbinder S, Ladzekpo D, Matheson T, Liu AY.

AIDS Behav. 2016 Jul;20(7):1461-9. doi: 10.1007/s10461-015-1055-5.


Health care transition preparation in youth with chronic conditions: working towards translational evidence with a patient perspective.

Ferris ME, Ferris MT, Okumura MJ, Cohen SE, Hooper SR.

J Pediatr Rehabil Med. 2015;8(1):31-7. doi: 10.3233/PRM-150316.


Syphilis transmission: a review of the current evidence.

Stoltey JE, Cohen SE.

Sex Health. 2015 Apr;12(2):103-9. doi: 10.1071/SH14174.


Self-management and transition among adolescents/young adults with chronic or end-stage kidney disease.

Ferris ME, Cuttance JR, Javalkar K, Cohen SE, Phillips A, Bickford K, Gibson K, Ferris MT, True K.

Blood Purif. 2015;39(1-3):99-104. doi: 10.1159/000368978. Epub 2015 Jan 20.


Best practices for fluorescence microscopy of the cyanobacterial circadian clock.

Cohen SE, Erb ML, Pogliano J, Golden SS.

Methods Enzymol. 2015;551:211-21. doi: 10.1016/bs.mie.2014.10.014. Epub 2014 Dec 26.


High interest in preexposure prophylaxis among men who have sex with men at risk for HIV infection: baseline data from the US PrEP demonstration project.

Cohen SE, Vittinghoff E, Bacon O, Doblecki-Lewis S, Postle BS, Feaster DJ, Matheson T, Trainor N, Blue RW, Estrada Y, Coleman ME, Elion R, Castro JG, Chege W, Philip SS, Buchbinder S, Kolber MA, Liu AY.

J Acquir Immune Defic Syndr. 2015 Apr 1;68(4):439-48. doi: 10.1097/QAI.0000000000000479.


Biological clustering supports both "Dutch" and "British" hypotheses of asthma and chronic obstructive pulmonary disease.

Ghebre MA, Bafadhel M, Desai D, Cohen SE, Newbold P, Rapley L, Woods J, Rugman P, Pavord ID, Newby C, Burton PR, May RD, Brightling CE.

J Allergy Clin Immunol. 2015 Jan;135(1):63-72. doi: 10.1016/j.jaci.2014.06.035. Epub 2014 Aug 13.


Dynamic localization of the cyanobacterial circadian clock proteins.

Cohen SE, Erb ML, Selimkhanov J, Dong G, Hasty J, Pogliano J, Golden SS.

Curr Biol. 2014 Aug 18;24(16):1836-44. doi: 10.1016/j.cub.2014.07.036. Epub 2014 Aug 7.


Validation of an acoustic gastrointestinal surveillance biosensor for postoperative ileus.

Spiegel BM, Kaneshiro M, Russell MM, Lin A, Patel A, Tashjian VC, Zegarski V, Singh D, Cohen SE, Reid MW, Whitman CB, Talley J, Martinez BM, Kaiser W.

J Gastrointest Surg. 2014 Oct;18(10):1795-803. doi: 10.1007/s11605-014-2597-y. Epub 2014 Aug 5.


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