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Items: 1 to 50 of 64

1.

Systematics: The Cohesive Nature of Bacterial Species Taxa.

Cohan FM.

Curr Biol. 2019 Mar 4;29(5):R169-R172. doi: 10.1016/j.cub.2019.01.033.

PMID:
30836089
2.

Transmission in the Origins of Bacterial Diversity, From Ecotypes to Phyla.

Cohan FM.

Microbiol Spectr. 2017 Oct;5(5). doi: 10.1128/microbiolspec.MTBP-0014-2016.

PMID:
29027519
3.

Genomic plasticity and rapid host switching can promote the evolution of generalism: a case study in the zoonotic pathogen Campylobacter.

Woodcock DJ, Krusche P, Strachan NJC, Forbes KJ, Cohan FM, Méric G, Sheppard SK.

Sci Rep. 2017 Aug 29;7(1):9650. doi: 10.1038/s41598-017-09483-9.

4.

Bacillus swezeyi sp. nov. and Bacillus haynesii sp. nov., isolated from desert soil.

Dunlap CA, Schisler DA, Perry EB, Connor N, Cohan FM, Rooney AP.

Int J Syst Evol Microbiol. 2017 Aug;67(8):2720-2725. doi: 10.1099/ijsem.0.002007. Epub 2017 Aug 15.

PMID:
28809143
5.

Bacillus nakamurai sp. nov., a black-pigment-producing strain.

Dunlap CA, Saunders LP, Schisler DA, Leathers TD, Naeem N, Cohan FM, Rooney AP.

Int J Syst Evol Microbiol. 2016 Aug;66(8):2987-91. doi: 10.1099/ijsem.0.001135. Epub 2016 May 4.

PMID:
27150918
6.

Bacterial Speciation: Genetic Sweeps in Bacterial Species.

Cohan FM.

Curr Biol. 2016 Feb 8;26(3):R112-5. doi: 10.1016/j.cub.2015.10.022.

7.

Recombination Does Not Hinder Formation or Detection of Ecological Species of Synechococcus Inhabiting a Hot Spring Cyanobacterial Mat.

Melendrez MC, Becraft ED, Wood JM, Olsen MT, Bryant DA, Heidelberg JF, Rusch DB, Cohan FM, Ward DM.

Front Microbiol. 2016 Jan 14;6:1540. doi: 10.3389/fmicb.2015.01540. eCollection 2015.

8.

The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat.

Olsen MT, Nowack S, Wood JM, Becraft ED, LaButti K, Lipzen A, Martin J, Schackwitz WS, Rusch DB, Cohan FM, Bryant DA, Ward DM.

Front Microbiol. 2015 Jun 23;6:604. doi: 10.3389/fmicb.2015.00604. eCollection 2015.

9.

The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park.

Becraft ED, Wood JM, Rusch DB, Kühl M, Jensen SI, Bryant DA, Roberts DW, Cohan FM, Ward DM.

Front Microbiol. 2015 Jun 22;6:590. doi: 10.3389/fmicb.2015.00590. eCollection 2015.

10.

Accuracy and efficiency of algorithms for the demarcation of bacterial ecotypes from DNA sequence data.

Francisco JC, Cohan FM, Krizanc D.

Int J Bioinform Res Appl. 2014;10(4-5):409-25. doi: 10.1504/IJBRA.2014.062992.

PMID:
24989860
11.

Genomic heterogeneity and ecological speciation within one subspecies of Bacillus subtilis.

Kopac S, Wang Z, Wiedenbeck J, Sherry J, Wu M, Cohan FM.

Appl Environ Microbiol. 2014 Aug;80(16):4842-53. doi: 10.1128/AEM.00576-14. Epub 2014 Jun 6.

12.

Speedy speciation in a bacterial microcosm: new species can arise as frequently as adaptations within a species.

Koeppel AF, Wertheim JO, Barone L, Gentile N, Krizanc D, Cohan FM.

ISME J. 2013 Jun;7(6):1080-91. doi: 10.1038/ismej.2013.3. Epub 2013 Jan 31.

13.

Diversity of Bacteria and Archaea in hypersaline sediment from Death Valley National Park, California.

Kim JS, Makama M, Petito J, Park NH, Cohan FM, Dungan RS.

Microbiologyopen. 2012 Jun;1(2):135-48. doi: 10.1002/mbo3.20.

14.

Prokaryotic sex: eukaryote-like qualities of recombination in an Archaean lineage.

Cohan FM, Aracena S.

Curr Biol. 2012 Aug 7;22(15):R601-2. doi: 10.1016/j.cub.2012.06.052.

15.

The quorum sensing diversity within and between ecotypes of Bacillus subtilis.

Stefanic P, Decorosi F, Viti C, Petito J, Cohan FM, Mandic-Mulec I.

Environ Microbiol. 2012 Jun;14(6):1378-89. doi: 10.1111/j.1462-2920.2012.02717.x. Epub 2012 Mar 6.

PMID:
22390407
16.

The variable subdomain of Escherichia coli SecA functions to regulate SecA ATPase activity and ADP release.

Das S, Grady LM, Michtavy J, Zhou Y, Cohan FM, Hingorani MM, Oliver DB.

J Bacteriol. 2012 May;194(9):2205-13. doi: 10.1128/JB.00039-12. Epub 2012 Mar 2.

17.

Fine-scale distribution patterns of Synechococcus ecological diversity in microbial mats of Mushroom Spring, Yellowstone National Park.

Becraft ED, Cohan FM, Kühl M, Jensen SI, Ward DM.

Appl Environ Microbiol. 2011 Nov;77(21):7689-97. doi: 10.1128/AEM.05927-11. Epub 2011 Sep 2.

18.

Microbial genomics: E. coli relatives out of doors and out of body.

Cohan FM, Kopac SM.

Curr Biol. 2011 Aug 9;21(15):R587-9. doi: 10.1016/j.cub.2011.06.011.

19.

Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches.

Wiedenbeck J, Cohan FM.

FEMS Microbiol Rev. 2011 Sep;35(5):957-76. doi: 10.1111/j.1574-6976.2011.00292.x. Epub 2011 Jul 29. Review.

20.

Community ecology of hot spring cyanobacterial mats: predominant populations and their functional potential.

Klatt CG, Wood JM, Rusch DB, Bateson MM, Hamamura N, Heidelberg JF, Grossman AR, Bhaya D, Cohan FM, Kühl M, Bryant DA, Ward DM.

ISME J. 2011 Aug;5(8):1262-78. doi: 10.1038/ismej.2011.73. Epub 2011 Jun 23.

21.

Influence of molecular resolution on sequence-based discovery of ecological diversity among Synechococcus populations in an alkaline siliceous hot spring microbial mat.

Melendrez MC, Lange RK, Cohan FM, Ward DM.

Appl Environ Microbiol. 2011 Feb;77(4):1359-67. doi: 10.1128/AEM.02032-10. Epub 2010 Dec 17.

22.

Synthetic biology: now that we're creators, what should we create?

Cohan FM.

Curr Biol. 2010 Aug 24;20(16):R675-7. doi: 10.1016/j.cub.2010.07.005.

23.

Ecology of speciation in the genus Bacillus.

Connor N, Sikorski J, Rooney AP, Kopac S, Koeppel AF, Burger A, Cole SG, Perry EB, Krizanc D, Field NC, Slaton M, Cohan FM.

Appl Environ Microbiol. 2010 Mar;76(5):1349-58. doi: 10.1128/AEM.01988-09. Epub 2010 Jan 4.

24.

Tracking bacterial responses to global warming with an ecotype-based systematics.

Cohan FM.

Clin Microbiol Infect. 2009 Jan;15 Suppl 1:54-9. doi: 10.1111/j.1469-0691.2008.02681.x. Review.

25.

The origins of ecological diversity in prokaryotes.

Cohan FM, Koeppel AF.

Curr Biol. 2008 Nov 11;18(21):R1024-34. doi: 10.1016/j.cub.2008.09.014. Review.

26.

Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics.

Koeppel A, Perry EB, Sikorski J, Krizanc D, Warner A, Ward DM, Rooney AP, Brambilla E, Connor N, Ratcliff RM, Nevo E, Cohan FM.

Proc Natl Acad Sci U S A. 2008 Feb 19;105(7):2504-9. doi: 10.1073/pnas.0712205105. Epub 2008 Feb 12.

27.

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.

Bhaya D, Grossman AR, Steunou AS, Khuri N, Cohan FM, Hamamura N, Melendrez MC, Bateson MM, Ward DM, Heidelberg JF.

ISME J. 2007 Dec;1(8):703-13. Epub 2007 Oct 25.

PMID:
18059494
28.

Genomics, environmental genomics and the issue of microbial species.

Ward DM, Cohan FM, Bhaya D, Heidelberg JF, Kühl M, Grossman A.

Heredity (Edinb). 2008 Feb;100(2):207-19. Epub 2007 Jun 6. Review.

29.

A systematics for discovering the fundamental units of bacterial diversity.

Cohan FM, Perry EB.

Curr Biol. 2007 May 15;17(10):R373-86. Review.

30.

Mass spectrometric analysis of lipopeptides from Bacillus strains isolated from diverse geographical locations.

Price NP, Rooney AP, Swezey JL, Perry E, Cohan FM.

FEMS Microbiol Lett. 2007 Jun;271(1):83-9. Epub 2007 Apr 10.

31.

Towards a conceptual and operational union of bacterial systematics, ecology, and evolution.

Cohan FM.

Philos Trans R Soc Lond B Biol Sci. 2006 Nov 29;361(1475):1985-96.

32.

Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function.

Ward DM, Bateson MM, Ferris MJ, Kühl M, Wieland A, Koeppel A, Cohan FM.

Philos Trans R Soc Lond B Biol Sci. 2006 Nov 29;361(1475):1997-2008.

33.

Opinion: Re-evaluating prokaryotic species.

Gevers D, Cohan FM, Lawrence JG, Spratt BG, Coenye T, Feil EJ, Stackebrandt E, Van de Peer Y, Vandamme P, Thompson FL, Swings J.

Nat Rev Microbiol. 2005 Sep;3(9):733-9. Review.

PMID:
16138101
34.

Gradual evolution in bacteria: evidence from Bacillus systematics.

Feldgarden M, Byrd N, Cohan FM.

Microbiology. 2003 Dec;149(Pt 12):3565-73.

PMID:
14663088
35.

Sexual isolation and speciation in bacteria.

Cohan FM.

Genetica. 2002 Nov;116(2-3):359-70. Review.

PMID:
12555790
36.

What are bacterial species?

Cohan FM.

Annu Rev Microbiol. 2002;56:457-87. Epub 2002 Jan 30. Review.

PMID:
12142474
37.

Bacterial species and speciation.

Cohan FM.

Syst Biol. 2001 Aug;50(4):513-24. Review.

PMID:
12116650
38.

Bacillus sonorensis sp. nov., a close relative of Bacillus licheniformis, isolated from soil in the Sonoran Desert, Arizona.

Palmisano MM, Nakamura LK, Duncan KE, Istock CA, Cohan FM.

Int J Syst Evol Microbiol. 2001 Sep;51(Pt 5):1671-9.

PMID:
11594594
39.

Protein-coding genes as molecular markers for ecologically distinct populations: the case of two Bacillus species.

Palys T, Berger E, Mitrica I, Nakamura LK, Cohan FM.

Int J Syst Evol Microbiol. 2000 May;50 Pt 3:1021-8.

PMID:
10843041
40.

Barriers to genetic exchange between bacterial species: Streptococcus pneumoniae transformation.

Majewski J, Zawadzki P, Pickerill P, Cohan FM, Dowson CG.

J Bacteriol. 2000 Feb;182(4):1016-23.

41.
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45.

Discovery and classification of ecological diversity in the bacterial world: the role of DNA sequence data.

Palys T, Nakamura LK, Cohan FM.

Int J Syst Bacteriol. 1997 Oct;47(4):1145-56.

PMID:
9336922
46.

Bacillus vallismortis sp. nov., a close relative of Bacillus subtilis, isolated from soil in Death Valley, California.

Roberts MS, Nakamura LK, Cohan FM.

Int J Syst Bacteriol. 1996 Apr;46(2):470-5.

PMID:
8934905
47.

Homology among nearly all plasmids infecting three Bacillus species.

Zawadzki P, Riley MA, Cohan FM.

J Bacteriol. 1996 Jan;178(1):191-8.

48.

RECOMBINATION AND MIGRATION RATES IN NATURAL POPULATIONS OF BACILLUS SUBTILIS AND BACILLUS MOJAVENSIS.

Roberts MS, Cohan FM.

Evolution. 1995 Dec;49(6):1081-1094. doi: 10.1111/j.1558-5646.1995.tb04435.x.

PMID:
28568514
49.
50.

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