Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 1 to 50 of 104

2.

Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation.

Hartig EI, Zhu S, King BL, Coffman JA.

Biol Open. 2016 Aug 15;5(8):1134-41. doi: 10.1242/bio.020065.

3.

An Elk transcription factor is required for Runx-dependent survival signaling in the sea urchin embryo.

Rizzo F, Coffman JA, Arnone MI.

Dev Biol. 2016 Aug 1;416(1):173-186. doi: 10.1016/j.ydbio.2016.05.026. Epub 2016 May 24.

4.

Maintenance of somatic tissue regeneration with age in short- and long-lived species of sea urchins.

Bodnar AG, Coffman JA.

Aging Cell. 2016 Aug;15(4):778-87. doi: 10.1111/acel.12487. Epub 2016 Apr 20.

5.

Developmental control of transcriptional and proliferative potency during the evolutionary emergence of animals.

Arenas-Mena C, Coffman JA.

Dev Dyn. 2015 Oct;244(10):1193-201. doi: 10.1002/dvdy.24305. Epub 2015 Aug 4.

6.
7.

On the meaning of chance in biology.

Coffman JA.

Biosemiotics. 2014 Dec 1;7(3):377-388.

8.

Oral-aboral axis specification in the sea urchin embryo, IV: hypoxia radializes embryos by preventing the initial spatialization of nodal activity.

Coffman JA, Wessels A, DeSchiffart C, Rydlizky K.

Dev Biol. 2014 Feb 15;386(2):302-7. doi: 10.1016/j.ydbio.2013.12.035. Epub 2013 Dec 31.

9.

Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus.

McCarty CM, Coffman JA.

Biochem Biophys Res Commun. 2013 Oct 25;440(3):413-8. doi: 10.1016/j.bbrc.2013.09.094. Epub 2013 Oct 1.

10.

Sea urchin akt activity is Runx-dependent and required for post-cleavage stage cell division.

Robertson AJ, Coluccio A, Jensen S, Rydlizky K, Coffman JA.

Biol Open. 2013 Mar 25;2(5):472-8. doi: 10.1242/bio.20133913. Print 2013 May 15.

11.

Nodal-mediated epigenesis requires dynamin-mediated endocytosis.

Ertl RP, Robertson AJ, Saunders D, Coffman JA.

Dev Dyn. 2011 Mar;240(3):704-11. doi: 10.1002/dvdy.22557. Epub 2011 Feb 8.

12.

Oxygen, pH, and oral-aboral axis specification in the sea urchin embryo.

Coluccio AE, LaCasse TJ, Coffman JA.

Mol Reprod Dev. 2011 Feb;78(2):68. doi: 10.1002/mrd.21267. Epub 2011 Jan 20. No abstract available.

13.

Mitochondria and metazoan epigenesis.

Coffman JA.

Semin Cell Dev Biol. 2009 May;20(3):321-9. doi: 10.1016/j.semcdb.2009.02.002. Epub 2009 Feb 13. Review.

14.

Mitochondrial patterns and function in animal development.

Coffman JA.

Semin Cell Dev Biol. 2009 May;20(3):320. doi: 10.1016/j.semcdb.2009.03.009. Epub 2009 Mar 25. Review. No abstract available.

PMID:
19429497
15.
16.

Is Runx a linchpin for developmental signaling in metazoans?

Coffman JA.

J Cell Biochem. 2009 May 15;107(2):194-202. doi: 10.1002/jcb.22143.

17.

Oral-aboral axis specification in the sea urchin embryo III. Role of mitochondrial redox signaling via H2O2.

Coffman JA, Coluccio A, Planchart A, Robertson AJ.

Dev Biol. 2009 Jun 1;330(1):123-30. doi: 10.1016/j.ydbio.2009.03.017. Epub 2009 Mar 27.

18.

Runx expression is mitogenic and mutually linked to Wnt activity in blastula-stage sea urchin embryos.

Robertson AJ, Coluccio A, Knowlton P, Dickey-Sims C, Coffman JA.

PLoS One. 2008;3(11):e3770. doi: 10.1371/journal.pone.0003770. Epub 2008 Nov 20.

19.

Mitochondria, redox signaling and axis specification in metazoan embryos.

Coffman JA, Denegre JM.

Dev Biol. 2007 Aug 15;308(2):266-80. Epub 2007 Jun 5. Review.

20.

Cis-regulatory control of the nodal gene, initiator of the sea urchin oral ectoderm gene network.

Nam J, Su YH, Lee PY, Robertson AJ, Coffman JA, Davidson EH.

Dev Biol. 2007 Jun 15;306(2):860-9. Epub 2007 Mar 28.

21.

The genome of the sea urchin Strongylocentrotus purpuratus.

Sea Urchin Genome Sequencing Consortium, Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Bergeron KF, Brandhorst BP, Whittle J, Berney K, Bottjer DJ, Calestani C, Peterson K, Chow E, Yuan QA, Elhaik E, Graur D, Reese JT, Bosdet I, Heesun S, Marra MA, Schein J, Anderson MK, Brockton V, Buckley KM, Cohen AH, Fugmann SD, Hibino T, Loza-Coll M, Majeske AJ, Messier C, Nair SV, Pancer Z, Terwilliger DP, Agca C, Arboleda E, Chen N, Churcher AM, Hallböök F, Humphrey GW, Idris MM, Kiyama T, Liang S, Mellott D, Mu X, Murray G, Olinski RP, Raible F, Rowe M, Taylor JS, Tessmar-Raible K, Wang D, Wilson KH, Yaguchi S, Gaasterland T, Galindo BE, Gunaratne HJ, Juliano C, Kinukawa M, Moy GW, Neill AT, Nomura M, Raisch M, Reade A, Roux MM, Song JL, Su YH, Townley IK, Voronina E, Wong JL, Amore G, Branno M, Brown ER, Cavalieri V, Duboc V, Duloquin L, Flytzanis C, Gache C, Lapraz F, Lepage T, Locascio A, Martinez P, Matassi G, Matranga V, Range R, Rizzo F, Röttinger E, Beane W, Bradham C, Byrum C, Glenn T, Hussain S, Manning G, Miranda E, Thomason R, Walton K, Wikramanayke A, Wu SY, Xu R, Brown CT, Chen L, Gray RF, Lee PY, Nam J, Oliveri P, Smith J, Muzny D, Bell S, Chacko J, Cree A, Curry S, Davis C, Dinh H, Dugan-Rocha S, Fowler J, Gill R, Hamilton C, Hernandez J, Hines S, Hume J, Jackson L, Jolivet A, Kovar C, Lee S, Lewis L, Miner G, Morgan M, Nazareth LV, Okwuonu G, Parker D, Pu LL, Thorn R, Wright R.

Science. 2006 Nov 10;314(5801):941-52. Erratum in: Science. 2007 Feb 9;315(5813):766.

22.

Protein tyrosine and serine-threonine phosphatases in the sea urchin, Strongylocentrotus purpuratus: identification and potential functions.

Byrum CA, Walton KD, Robertson AJ, Carbonneau S, Thomason RT, Coffman JA, McClay DR.

Dev Biol. 2006 Dec 1;300(1):194-218. Epub 2006 Aug 25.

23.

The genomic repertoire for cell cycle control and DNA metabolism in S. purpuratus.

Fernandez-Guerra A, Aze A, Morales J, Mulner-Lorillon O, Cosson B, Cormier P, Bradham C, Adams N, Robertson AJ, Marzluff WF, Coffman JA, Genevière AM.

Dev Biol. 2006 Dec 1;300(1):238-51. Epub 2006 Sep 14.

24.

The sea urchin kinome: a first look.

Bradham CA, Foltz KR, Beane WS, Arnone MI, Rizzo F, Coffman JA, Mushegian A, Goel M, Morales J, Geneviere AM, Lapraz F, Robertson AJ, Kelkar H, Loza-Coll M, Townley IK, Raisch M, Roux MM, Lepage T, Gache C, McClay DR, Manning G.

Dev Biol. 2006 Dec 1;300(1):180-93. Epub 2006 Sep 12.

25.

The genomic underpinnings of apoptosis in Strongylocentrotus purpuratus.

Robertson AJ, Croce J, Carbonneau S, Voronina E, Miranda E, McClay DR, Coffman JA.

Dev Biol. 2006 Dec 1;300(1):321-34. Epub 2006 Aug 30.

26.

CBFbeta is a facultative Runx partner in the sea urchin embryo.

Robertson AJ, Dickey-Sims C, Ransick A, Rupp DE, McCarthy JJ, Coffman JA.

BMC Biol. 2006 Feb 9;4:4.

27.

Dentists could be leading bioengineers of 21st century.

Murray PE, Coffman JA, Godoy-Garcia F.

Todays FDA. 2005 Jul;17(7):17-8. No abstract available.

PMID:
16206394
28.

Runx-dependent expression of PKC is critical for cell survival in the sea urchin embryo.

Dickey-Sims C, Robertson AJ, Rupp DE, McCarthy JJ, Coffman JA.

BMC Biol. 2005 Aug 2;3:18.

29.

On reductionism, organicism, somatic mutations and cancer.

Coffman JA.

Bioessays. 2005 Apr;27(4):459; author reply 460-1. No abstract available.

PMID:
15770679
30.

Sea urchin vault structure, composition, and differential localization during development.

Stewart PL, Makabi M, Lang J, Dickey-Sims C, Robertson AJ, Coffman JA, Suprenant KA.

BMC Dev Biol. 2005 Feb 14;5:3.

31.

Identification of sequence-specific DNA binding proteins.

Coffman JA, Yuh CH.

Methods Cell Biol. 2004;74:653-75. Review. No abstract available.

PMID:
15575625
32.
33.

Pulp responses to remaining dentin thickness.

Murray PE, Coffman JA, Carcia-Godoy F.

Todays FDA. 2004 Jul;16(7):17-9. No abstract available.

PMID:
19244683
34.

Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene.

Coffman JA, Dickey-Sims C, Haug JS, McCarthy JJ, Robertson AJ.

BMC Biol. 2004 May 7;2:6.

35.

Cell cycle development.

Coffman JA.

Dev Cell. 2004 Mar;6(3):321-7. Review.

36.

The sea urchin stem-loop-binding protein: a maternally expressed protein that probably functions in expression of multiple classes of histone mRNA.

Robertson AJ, Howard JT, Dominski Z, Schnackenberg BJ, Sumerel JL, McCarthy JJ, Coffman JA, Marzluff WF.

Nucleic Acids Res. 2004 Feb 3;32(2):811-8. Print 2004.

37.
38.

The evolution of Runx genes I. A comparative study of sequences from phylogenetically diverse model organisms.

Rennert J, Coffman JA, Mushegian AR, Robertson AJ.

BMC Evol Biol. 2003 Mar 24;3:4. Epub 2003 Mar 24.

39.

The expression of SpRunt during sea urchin embryogenesis.

Robertson AJ, Dickey CE, McCarthy JJ, Coffman JA.

Mech Dev. 2002 Sep;117(1-2):327-30.

40.
41.

Large-scale culture and preparation of sea urchin embryos for isolation of transcriptional regulatory proteins.

Coffman JA, Leahy PS.

Methods Mol Biol. 2000;135:17-23. No abstract available.

PMID:
10791300
42.
43.

Cellular localization of huntingtin in striatal and cortical neurons in rats: lack of correlation with neuronal vulnerability in Huntington's disease.

Fusco FR, Chen Q, Lamoreaux WJ, Figueredo-Cardenas G, Jiao Y, Coffman JA, Surmeier DJ, Honig MG, Carlock LR, Reiner A.

J Neurosci. 1999 Feb 15;19(4):1189-202.

44.

SpMyb functions as an intramodular repressor to regulate spatial expression of CyIIIa in sea urchin embryos.

Coffman JA, Kirchhamer CV, Harrington MG, Davidson EH.

Development. 1997 Dec;124(23):4717-27.

45.

Covalent variation is a general property of transcription factors in the sea urchin embryo.

Harrington MG, Coffman JA, Davidson EH.

Mol Mar Biol Biotechnol. 1997 Sep;6(3):153-62.

PMID:
9324412
47.
48.

Cross regulation of four GATA factors that control nitrogen catabolic gene expression in Saccharomyces cerevisiae.

Coffman JA, Rai R, Loprete DM, Cunningham T, Svetlov V, Cooper TG.

J Bacteriol. 1997 Jun;179(11):3416-29.

49.

Supplemental Content

Loading ...
Support Center