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A rapid viability and drug-susceptibility assay utilizing mycobacteriophage as an indicator of drug susceptibilities of Anti-TB drugs against Mycobacterium smegmatis mc2 155.

Crowley GC, O'Mahony J, Coffey A, Sayers R, Cotter P.

Int J Mycobacteriol. 2019 Apr-Jun;8(2):124-131. doi: 10.4103/ijmy.ijmy_47_19.


A review of polyols - biotechnological production, food applications, regulation, labeling and health effects.

Rice T, Zannini E, K Arendt E, Coffey A.

Crit Rev Food Sci Nutr. 2019 Jun 18:1-18. doi: 10.1080/10408398.2019.1625859. [Epub ahead of print]


Leuconostoc citreum TR116: In-situ production of mannitol in sourdough and its application to reduce sugar in burger buns.

Sahin AW, Rice T, Zannini E, Axel C, Coffey A, Lynch KM, Arendt EK.

Int J Food Microbiol. 2019 Aug 2;302:80-89. doi: 10.1016/j.ijfoodmicro.2018.06.026. Epub 2018 Jul 2.


Impact of a compassionate care leadership programme.

Saab MM, Drennan J, Cornally N, Landers M, Hegarty J, Savage E, Lunn C, Coffey A.

Br J Nurs. 2019 Jun 13;28(11):708-714. doi: 10.12968/bjon.2019.28.11.708.


The impact of compassionate care education on nurses: A mixed-method systematic review.

Coffey A, Saab MM, Landers M, Cornally N, Hegarty J, Drennan J, Lunn C, Savage E.

J Adv Nurs. 2019 Jun 4. doi: 10.1111/jan.14088. [Epub ahead of print] Review.


A clinicopathologic study of the spectrum of systemic forms of EBV-associated T-cell lymphoproliferative disorders of childhood: A single tertiary care pediatric institution experience in North America.

Coffey AM, Lewis A, Marcogliese AN, Elghetany MT, Punia JN, Chang CC, Allen CE, McClain KL, Gaikwad AS, El-Mallawany NK, Curry CV.

Pediatr Blood Cancer. 2019 Aug;66(8):e27798. doi: 10.1002/pbc.27798. Epub 2019 May 16.


First reported detection of biofilm formation by Campylobacter fetus during investigation of a case of prosthetic valve endocarditis.

Lynch C, O'Connor JA, O'Brien D, Vaughan C, Bolton D, Coffey A, Lucey B.

J Clin Pathol. 2019 May 4. pii: jclinpath-2018-205677. doi: 10.1136/jclinpath-2018-205677. [Epub ahead of print]


Draft Genome Sequence of Campylobacter fetus subsp. fetus CITCf01, Isolated from a Patient with Subacute Bacterial Endocarditis.

Culligan EP, O'Connor J, Lynch C, O'Brien D, Vaughan C, Bolton D, Coffey A, Sleator RD, Lucey B.

Microbiol Resour Announc. 2019 Mar 14;8(11). pii: e01556-18. doi: 10.1128/MRA.01556-18.


Dysfunction of attention switching networks in amyotrophic lateral sclerosis.

McMackin R, Dukic S, Broderick M, Iyer PM, Pinto-Grau M, Mohr K, Chipika R, Coffey A, Buxo T, Schuster C, Gavin B, Heverin M, Bede P, Pender N, Lalor EC, Muthuraman M, Hardiman O, Nasseroleslami B.

Neuroimage Clin. 2019;22:101707. doi: 10.1016/j.nicl.2019.101707. Epub 2019 Feb 2.


microRNA-146a-5p association with the cardiometabolic disease risk factor TMAO.

Coffey AR, Kanke M, Smallwood TL, Albright J, Pitman W, Gharaibeh RZ, Hua K, Gertz E, Biddinger SB, Temel RE, Pomp D, Sethupathy P, Bennett BJ.

Physiol Genomics. 2019 Feb 1;51(2):59-71. doi: 10.1152/physiolgenomics.00079.2018. Epub 2019 Jan 11.


Bacteriophages in Food Applications: From Foe to Friend.

O'Sullivan L, Bolton D, McAuliffe O, Coffey A.

Annu Rev Food Sci Technol. 2019 Mar 25;10:151-172. doi: 10.1146/annurev-food-032818-121747. Epub 2019 Jan 11.


Copy-number variants in clinical genome sequencing: deployment and interpretation for rare and undiagnosed disease.

Gross AM, Ajay SS, Rajan V, Brown C, Bluske K, Burns NJ, Chawla A, Coffey AJ, Malhotra A, Scocchia A, Thorpe E, Dzidic N, Hovanes K, Sahoo T, Dolzhenko E, Lajoie B, Khouzam A, Chowdhury S, Belmont J, Roller E, Ivakhno S, Tanner S, McEachern J, Hambuch T, Eberle M, Hagelstrom RT, Bentley DR, Perry DL, Taft RJ.

Genet Med. 2019 May;21(5):1121-1130. doi: 10.1038/s41436-018-0295-y. Epub 2018 Oct 8.


Ascaris Larval Infection and Lung Invasion Directly Induce Severe Allergic Airway Disease in Mice.

Weatherhead JE, Porter P, Coffey A, Haydel D, Versteeg L, Zhan B, Gazzinelli Guimarães AC, Fujiwara R, Jaramillo AM, Bottazzi ME, Hotez PJ, Corry DB, Beaumier CM.

Infect Immun. 2018 Nov 20;86(12). pii: e00533-18. doi: 10.1128/IAI.00533-18. Print 2018 Dec.


Heroin self-administration as a function of time of day in rats.

Coffey AA, Fang J, Grigson PS.

Psychopharmacology (Berl). 2018 Oct;235(10):3005-3015. doi: 10.1007/s00213-018-4990-9. Epub 2018 Sep 3.


Development and psychometric testing of the clinical leadership needs analysis (CLeeNA) instrument for nurses and midwives.

Mc Carthy VJC, Murphy A, Savage E, Hegarty J, Coffey A, Leahy-Warren P, Horgan A, O'Connell R, Marsh L, Drennan J.

J Nurs Manag. 2019 Mar;27(2):245-255. doi: 10.1111/jonm.12672. Epub 2018 Aug 31.


The factors to be considered when evaluating bedside handover.

Forde MF, Coffey A, Hegarty J.

J Nurs Manag. 2018 Oct;26(7):757-768. doi: 10.1111/jonm.12598. Epub 2018 Aug 22. Review.


Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'.

Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A.

Viruses. 2018 Jul 26;10(8). pii: E394. doi: 10.3390/v10080394.


Polyol-producing lactic acid bacteria isolated from sourdough and their application to reduce sugar in a quinoa-based milk substitute.

Jeske S, Zannini E, Lynch KM, Coffey A, Arendt EK.

Int J Food Microbiol. 2018 Dec 2;286:31-36. doi: 10.1016/j.ijfoodmicro.2018.07.013. Epub 2018 Jul 20.


Exopolysaccharide producing lactic acid bacteria: Their techno-functional role and potential application in gluten-free bread products.

Lynch KM, Coffey A, Arendt EK.

Food Res Int. 2018 Aug;110:52-61. doi: 10.1016/j.foodres.2017.03.012. Epub 2017 Mar 10.


Improvement of taste and shelf life of yeasted low-salt bread containing functional sourdoughs using Lactobacillus amylovorus DSM 19280 and Weisella cibaria MG1.

Belz MCE, Axel C, Arendt EK, Lynch KM, Brosnan B, Sheehan EM, Coffey A, Zannini E.

Int J Food Microbiol. 2019 Aug 2;302:69-79. doi: 10.1016/j.ijfoodmicro.2018.07.015. Epub 2018 Jul 12.


Exposure to environmental enrichment attenuates addiction-like behavior and alters molecular effects of heroin self-administration in rats.

Imperio CG, McFalls AJ, Hadad N, Blanco-Berdugo L, Masser DR, Colechio EM, Coffey AA, Bixler GV, Stanford DR, Vrana KE, Grigson PS, Freeman WM.

Neuropharmacology. 2018 Sep 1;139:26-40. doi: 10.1016/j.neuropharm.2018.06.037. Epub 2018 Jun 28.


Effects of natural solar UV-B radiation on three Arabidopsis accessions are strongly affected by seasonal weather conditions.

Coffey A, Jansen MAK.

Plant Physiol Biochem. 2019 Jan;134:64-72. doi: 10.1016/j.plaphy.2018.06.016. Epub 2018 Jun 18.


Avian lungs: A novel scaffold for lung bioengineering.

Wrenn SM, Griswold ED, Uhl FE, Uriarte JJ, Park HE, Coffey AL, Dearborn JS, Ahlers BA, Deng B, Lam YW, Huston DR, Lee PC, Wagner DE, Weiss DJ.

PLoS One. 2018 Jun 27;13(6):e0198956. doi: 10.1371/journal.pone.0198956. eCollection 2018.


General practitioners' knowledge, attitudes, and experiences of managing behavioural and psychological symptoms of dementia: A mixed-methods systematic review.

Jennings AA, Foley T, Walsh KA, Coffey A, Browne JP, Bradley CP.

Int J Geriatr Psychiatry. 2018 Jun 13. doi: 10.1002/gps.4918. [Epub ahead of print] Review.


How do older people discuss their own sexuality? A systematic review of qualitative research studies.

Gewirtz-Meydan A, Hafford-Letchfield T, Ayalon L, Benyamini Y, Biermann V, Coffey A, Jackson J, Phelan A, Voß P, Geiger Zeman M, Zeman Z.

Cult Health Sex. 2019 Mar;21(3):293-308. doi: 10.1080/13691058.2018.1465203. Epub 2018 Jun 4.


Implementing Motor Unit Number Index (MUNIX) in a large clinical trial: Real world experience from 27 centres.

Neuwirth C, Braun N, Claeys KG, Bucelli R, Fournier C, Bromberg M, Petri S, Goedee S, Lenglet T, Leppanen R, Canosa A, Goodman I, Al-Lozi M, Ohkubo T, Hübers A, Atassi N, Abrahao A, Funke A, Appelfeller M, Tümmler A, Finegan E, Glass JD, Babu S, Ladha SS, Kwast-Rabben O, Juntas-Morales R, Coffey A, Chaudhry V, Vu T, Saephanh C, Newhard C, Zakrzewski M, Rosier E, Hamel N, Raheja D, Raaijman J, Ferguson T, Weber M.

Clin Neurophysiol. 2018 Aug;129(8):1756-1762. doi: 10.1016/j.clinph.2018.04.614. Epub 2018 May 3.


Erwinia amylovora phage vB_EamM_Y3 represents another lineage of hairy Myoviridae.

Buttimer C, Born Y, Lucid A, Loessner MJ, Fieseler L, Coffey A.

Res Microbiol. 2018 Nov;169(9):505-514. doi: 10.1016/j.resmic.2018.04.006. Epub 2018 May 18.


Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.

Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A.

Pharmaceuticals (Basel). 2018 May 14;11(2). pii: E45. doi: 10.3390/ph11020045.


Direct Reprogramming of Mouse Fibroblasts into Functional Skeletal Muscle Progenitors.

Bar-Nur O, Gerli MFM, Di Stefano B, Almada AE, Galvin A, Coffey A, Huebner AJ, Feige P, Verheul C, Cheung P, Payzin-Dogru D, Paisant S, Anselmo A, Sadreyev RI, Ott HC, Tajbakhsh S, Rudnicki MA, Wagers AJ, Hochedlinger K.

Stem Cell Reports. 2018 May 8;10(5):1505-1521. doi: 10.1016/j.stemcr.2018.04.009.


Comparison of Staphylococcus Phage K with Close Phage Relatives Commonly Employed in Phage Therapeutics.

Ajuebor J, Buttimer C, Arroyo-Moreno S, Chanishvili N, Gabriel EM, O'Mahony J, McAuliffe O, Neve H, Franz C, Coffey A.

Antibiotics (Basel). 2018 Apr 25;7(2). pii: E37. doi: 10.3390/antibiotics7020037.


Silk Route to the Acceptance and Re-Implementation of Bacteriophage Therapy-Part II.

Expert round table on acceptance and re-implementation of bacteriophage therapy, Sybesma W, Rohde C, Bardy P, Pirnay JP, Cooper I, Caplin J, Chanishvili N, Coffey A, De Vos D, Scholz AH, McCallin S, Püschner HM, Pantucek R, Aminov R, Doškař J, Kurtbӧke Dİ.

Antibiotics (Basel). 2018 Apr 23;7(2). pii: E35. doi: 10.3390/antibiotics7020035.


Comparative genomics of Cp8viruses with special reference to Campylobacter phage vB_CjeM_los1, isolated from a slaughterhouse in Ireland.

O'Sullivan L, Lucid A, Neve H, Franz CMAP, Bolton D, McAuliffe O, Paul Ross R, Coffey A.

Arch Virol. 2018 Aug;163(8):2139-2154. doi: 10.1007/s00705-018-3845-3. Epub 2018 Apr 23.


Natural fertility, infertility and the role of medically assisted reproduction: The knowledge amongst women of reproductive age in North Queensland.

Cheung NK, Coffey A, Woods C, de Costa C.

Aust N Z J Obstet Gynaecol. 2019 Feb;59(1):140-146. doi: 10.1111/ajo.12806. Epub 2018 Apr 16.


Diversity of Listeria monocytogenes strains isolated from Agaricus bisporus mushroom production.

Pennone V, Lehardy A, Coffey A, Mcauliffe O, Jordan K.

J Appl Microbiol. 2018 Aug;125(2):586-595. doi: 10.1111/jam.13773. Epub 2018 May 23.


Selection of Potential Therapeutic Bacteriophages that Lyse a CTX-M-15 Extended Spectrum β-Lactamase Producing Salmonella enterica Serovar Typhi Strain from the Democratic Republic of the Congo.

Kakabadze E, Makalatia K, Grdzelishvili N, Bakuradze N, Goderdzishvili M, Kusradze I, Phoba MF, Lunguya O, Lood C, Lavigne R, Jacobs J, Deborggraeve S, De Block T, Van Puyvelde S, Lee D, Coffey A, Sedrakyan A, Soentjens P, De Vos D, Pirnay JP, Chanishvili N.

Viruses. 2018 Apr 3;10(4). pii: E172. doi: 10.3390/v10040172.


Erythropoietic Protoporphyria: Initial Diagnosis With Cholestatic Liver Disease.

Coffey A, Leung DH, Quintanilla NM.

Pediatrics. 2018 Apr;141(Suppl 5):S445-S450. doi: 10.1542/peds.2016-1625.


Lactic Acid Bacteria Exopolysaccharides in Foods and Beverages: Isolation, Properties, Characterization, and Health Benefits.

Lynch KM, Zannini E, Coffey A, Arendt EK.

Annu Rev Food Sci Technol. 2018 Mar 25;9:155-176. doi: 10.1146/annurev-food-030117-012537.


Two-dimensional halide perovskite nanomaterials and heterostructures.

Shi E, Gao Y, Finkenauer BP, Akriti, Coffey AH, Dou L.

Chem Soc Rev. 2018 Aug 13;47(16):6046-6072. doi: 10.1039/C7CS00886D. Review.


Adropin: An endocrine link between the biological clock and cholesterol homeostasis.

Ghoshal S, Stevens JR, Billon C, Girardet C, Sitaula S, Leon AS, Rao DC, Skinner JS, Rankinen T, Bouchard C, Nuñez MV, Stanhope KL, Howatt DA, Daugherty A, Zhang J, Schuelke M, Weiss EP, Coffey AR, Bennett BJ, Sethupathy P, Burris TP, Havel PJ, Butler AA.

Mol Metab. 2018 Feb;8:51-64. doi: 10.1016/j.molmet.2017.12.002. Epub 2017 Dec 30.


A Mokken analysis of the literacy in musculoskeletal problems questionnaire.

Vaughan B, Mulcahy J, Coffey A, Addinsall L, Ryan S, Fitzgerald K.

Health Qual Life Outcomes. 2017 Dec 21;15(1):245. doi: 10.1186/s12955-017-0826-2.


Aqueous, Heterogeneous Parahydrogen-Induced 15N Polarization.

Bales LB, Kovtunov KV, Barskiy DA, Shchepin RV, Coffey AM, Kovtunova LM, Bukhtiyarov AV, Feldman MA, Bukhtiyarov VI, Chekmenev EY, Koptyug IV, Goodson BM.

J Phys Chem C Nanomater Interfaces. 2017 Jul 20;121(28):15304-15309. doi: 10.1021/acs.jpcc.7b05912. Epub 2017 Jun 21.


Primaquine hybrids as promising antimycobacterial and antimalarial agents.

Pavić K, Perković I, Pospíšilová Š, Machado M, Fontinha D, Prudêncio M, Jampilek J, Coffey A, Endersen L, Rimac H, Zorc B.

Eur J Med Chem. 2018 Jan 1;143:769-779. doi: 10.1016/j.ejmech.2017.11.083. Epub 2017 Dec 2.


Synthesis and In Vitro Antimycobacterial Activity of Novel N-Arylpiperazines Containing an Ethane-1,2-diyl Connecting Chain.

Goněc T, Malík I, Csöllei J, Jampílek J, Stolaříková J, Solovič I, Mikuš P, Keltošová S, Kollár P, O'Mahony J, Coffey A.

Molecules. 2017 Nov 30;22(12). pii: E2100. doi: 10.3390/molecules22122100.


Management of benign middle ear tumors: A series of 7 cases.

Qian ZJ, Coffey AM, O'Toole KM, Lalwani AK.

Ear Nose Throat J. 2017 Oct-Nov;96(10-11):426-432.


A pulse programmable parahydrogen polarizer using a tunable electromagnet and dual channel NMR spectrometer.

Coffey AM, Shchepin RV, Feng B, Colon RD, Wilkens K, Waddell KW, Chekmenev EY.

J Magn Reson. 2017 Nov;284:115-124. doi: 10.1016/j.jmr.2017.09.013. Epub 2017 Sep 30.


Systems genetics identifies a co-regulated module of liver microRNAs associated with plasma LDL cholesterol in murine diet-induced dyslipidemia.

Coffey AR, Smallwood TL, Albright J, Hua K, Kanke M, Pomp D, Bennett BJ, Sethupathy P.

Physiol Genomics. 2017 Nov 1;49(11):618-629. doi: 10.1152/physiolgenomics.00050.2017. Epub 2017 Sep 15.


Bacteriophage endolysins and their applications.

Ajuebor J, McAuliffe O, O'Mahony J, Ross RP, Hill C, Coffey A.

Sci Prog. 2016 Jun 1;99(2):183-199. doi: 10.3184/003685016X14627913637705.


The UVB photoreceptor UVR8 mediates accumulation of UV-absorbing pigments, but not changes in plant morphology, under outdoor conditions.

Coffey A, Prinsen E, Jansen MAK, Conway J.

Plant Cell Environ. 2017 Oct;40(10):2250-2260. doi: 10.1111/pce.13025. Epub 2017 Aug 11.


Advance care planning within survivorship care plans for older cancer survivors: A systematic review.

O'Caoimh R, Cornally N, O'Sullivan R, Hally R, Weathers E, Lavan AH, Kearns T, Coffey A, McGlade C, Molloy DW.

Maturitas. 2017 Nov;105:52-57. doi: 10.1016/j.maturitas.2017.06.027. Epub 2017 Jun 23. Review.


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