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Items: 46

1.

Understanding pseudo-albinism in sole (Solea senegalensis): a transcriptomics and metagenomics approach.

Pinto PIS, Guerreiro CC, Costa RA, Martinez-Blanch JF, Carballo C, Codoñer FM, Manchado M, Power DM.

Sci Rep. 2019 Sep 20;9(1):13604. doi: 10.1038/s41598-019-49501-6.

2.

Yeast β-glucans and microalgal extracts modulate the immune response and gut microbiome in Senegalese sole (Solea senegalensis).

Carballo C, Pinto PIS, Mateus AP, Berbel C, Guerreiro CC, Martinez-Blanch JF, Codoñer FM, Mantecon L, Power DM, Manchado M.

Fish Shellfish Immunol. 2019 Sep;92:31-39. doi: 10.1016/j.fsi.2019.05.044. Epub 2019 May 23.

PMID:
31128296
3.

A Two-Cohort RNA-seq Study Reveals Changes in Endometrial and Blood miRNome in Fertile and Infertile Women.

Rekker K, Altmäe S, Suhorutshenko M, Peters M, Martinez-Blanch JF, Codoñer FM, Vilella F, Simón C, Salumets A, Velthut-Meikas A.

Genes (Basel). 2018 Nov 23;9(12). pii: E574. doi: 10.3390/genes9120574.

4.

Endometrial receptivity revisited: endometrial transcriptome adjusted for tissue cellular heterogeneity.

Suhorutshenko M, Kukushkina V, Velthut-Meikas A, Altmäe S, Peters M, Mägi R, Krjutškov K, Koel M, Codoñer FM, Martinez-Blanch JF, Vilella F, Simón C, Salumets A, Laisk T.

Hum Reprod. 2018 Nov 1;33(11):2074-2086. doi: 10.1093/humrep/dey301.

PMID:
30295736
5.

Effects of daily consumption of the probiotic Bifidobacterium animalis subsp. lactis CECT 8145 on anthropometric adiposity biomarkers in abdominally obese subjects: a randomized controlled trial.

Pedret A, Valls RM, Calderón-Pérez L, Llauradó E, Companys J, Pla-Pagà L, Moragas A, Martín-Luján F, Ortega Y, Giralt M, Caimari A, Chenoll E, Genovés S, Martorell P, Codoñer FM, Ramón D, Arola L, Solà R.

Int J Obes (Lond). 2019 Sep;43(9):1863-1868. doi: 10.1038/s41366-018-0220-0. Epub 2018 Sep 27.

PMID:
30262813
6.

Complete Genome Sequence of a New Ruminococcaceae Bacterium Isolated from Anaerobic Biomass Hydrolysis.

Hahnke S, Abendroth C, Langer T, Codoñer FM, Ramm P, Porcar M, Luschnig O, Klocke M.

Genome Announc. 2018 Apr 5;6(14). pii: e00030-18. doi: 10.1128/genomeA.00030-18.

7.

Bifidobacterium longum subsp infantis CECT7210-supplemented formula reduces diarrhea in healthy infants: a randomized controlled trial.

Escribano J, Ferré N, Gispert-Llaurado M, Luque V, Rubio-Torrents C, Zaragoza-Jordana M, Polanco I, Codoñer FM, Chenoll E, Morera M, Moreno-Muñoz JA, Rivero M, Closa-Monasterolo R.

Pediatr Res. 2018 Jun;83(6):1120-1128. doi: 10.1038/pr.2018.34. Epub 2018 May 2.

PMID:
29538368
8.

Gut microbial composition in patients with psoriasis.

Codoñer FM, Ramírez-Bosca A, Climent E, Carrión-Gutierrez M, Guerrero M, Pérez-Orquín JM, Horga de la Parte J, Genovés S, Ramón D, Navarro-López V, Chenoll E.

Sci Rep. 2018 Feb 28;8(1):3812. doi: 10.1038/s41598-018-22125-y.

9.

Complete Genome Sequence of the New Urolithin-Producing Bacterium Gordonibacter urolithinfaciens DSM 27213T.

Martinez-Blanch JF, Ramón D, Beltrán D, Romo-Vaquero M, García-Villalba R, Espín JC, Tomás-Barberán FA, Codoñer FM, Selma MV.

Genome Announc. 2017 Dec 14;5(50). pii: e01120-17. doi: 10.1128/genomeA.01120-17.

10.

Complete Genome Sequence of a New Firmicutes Species Isolated from Anaerobic Biomass Hydrolysis.

Abendroth C, Hahnke S, Codoñer FM, Klocke M, Luschnig O, Porcar M.

Genome Announc. 2017 Oct 5;5(40). pii: e00686-17. doi: 10.1128/genomeA.00686-17.

11.

Amiloride, An Old Diuretic Drug, Is a Potential Therapeutic Agent for Multiple Myeloma.

Rojas EA, Corchete LA, San-Segundo L, Martínez-Blanch JF, Codoñer FM, Paíno T, Puig N, García-Sanz R, Mateos MV, Ocio EM, Misiewicz-Krzeminska I, Gutiérrez NC.

Clin Cancer Res. 2017 Nov 1;23(21):6602-6615. doi: 10.1158/1078-0432.CCR-17-0678. Epub 2017 Aug 8.

12.

Gag-protease coevolution analyses define novel structural surfaces in the HIV-1 matrix and capsid involved in resistance to Protease Inhibitors.

Codoñer FM, Peña R, Blanch-Lombarte O, Jimenez-Moyano E, Pino M, Vollbrecht T, Clotet B, Martinez-Picado J, Draenert R, Prado JG.

Sci Rep. 2017 Jun 16;7(1):3717. doi: 10.1038/s41598-017-03260-4.

13.

Complete Genome Sequence of the Probiotic Strain Lactobacillus salivarius LPM01.

Chenoll E, Codoñer FM, Martinez-Blanch JF, Acevedo-Piérart M, Ormeño ML, Ramón D, Genovés S.

Genome Announc. 2016 Nov 23;4(6). pii: e01319-16. doi: 10.1128/genomeA.01319-16.

14.

Evidence that the endometrial microbiota has an effect on implantation success or failure.

Moreno I, Codoñer FM, Vilella F, Valbuena D, Martinez-Blanch JF, Jimenez-Almazán J, Alonso R, Alamá P, Remohí J, Pellicer A, Ramon D, Simon C.

Am J Obstet Gynecol. 2016 Dec;215(6):684-703. doi: 10.1016/j.ajog.2016.09.075. Epub 2016 Oct 4.

PMID:
27717732
15.

A highly diverse, desert-like microbial biocenosis on solar panels in a Mediterranean city.

Dorado-Morales P, Vilanova C, Peretó J, Codoñer FM, Ramón D, Porcar M.

Sci Rep. 2016 Jul 5;6:29235. doi: 10.1038/srep29235.

16.

Complete Genome Sequence of Lactobacillus rhamnosus Strain BPL5 (CECT 8800), a Probiotic for Treatment of Bacterial Vaginosis.

Chenoll E, Codoñer FM, Martinez-Blanch JF, Ramón D, Genovés S, Menabrito M.

Genome Announc. 2016 Apr 21;4(2). pii: e00292-16. doi: 10.1128/genomeA.00292-16.

17.

Metagenomic Analysis of Milk of Healthy and Mastitis-Suffering Women.

Jiménez E, de Andrés J, Manrique M, Pareja-Tobes P, Tobes R, Martínez-Blanch JF, Codoñer FM, Ramón D, Fernández L, Rodríguez JM.

J Hum Lact. 2015 Aug;31(3):406-15. doi: 10.1177/0890334415585078. Epub 2015 May 6.

PMID:
25948578
18.

Complete Genome Sequence of Bifidobacterium longum subsp. infantis Strain CECT 7210, a Probiotic Strain Active against Rotavirus Infections.

Chenoll E, Rivero M, Codoñer FM, Martinez-Blanch JF, Ramón D, Genovés S, Moreno Muñoz JA.

Genome Announc. 2015 Apr 2;3(2). pii: e00105-15. doi: 10.1128/genomeA.00105-15.

19.

Systematic production of inactivating and non-inactivating suppressor mutations at the relA locus that compensate the detrimental effects of complete spot loss and affect glycogen content in Escherichia coli.

Montero M, Rahimpour M, Viale AM, Almagro G, Eydallin G, Sevilla Á, Cánovas M, Bernal C, Lozano AB, Muñoz FJ, Baroja-Fernández E, Bahaji A, Mori H, Codoñer FM, Pozueta-Romero J.

PLoS One. 2014 Sep 4;9(9):e106938. doi: 10.1371/journal.pone.0106938. eCollection 2014.

20.

Draft Genome Sequence of Bifidobacterium animalis subsp. lactis Strain CECT 8145, Able To Improve Metabolic Syndrome In Vivo.

Chenoll E, Codoñer FM, Silva A, Martinez-Blanch JF, Martorell P, Ramón D, Genovés S.

Genome Announc. 2014 Mar 27;2(2). pii: e00183-14. doi: 10.1128/genomeA.00183-14.

21.

Genomic analysis of the emergence and evolution of multidrug resistance during a Klebsiella pneumoniae outbreak including carbapenem and colistin resistance.

López-Camacho E, Gómez-Gil R, Tobes R, Manrique M, Lorenzo M, Galván B, Salvarelli E, Moatassim Y, Salanueva IJ, Pareja E, Codoñer FM, Alvarez-Tejado M, Garcillán-Barcia MP, De la Cruz F, Mingorance J.

J Antimicrob Chemother. 2014 Mar;69(3):632-6. doi: 10.1093/jac/dkt419. Epub 2013 Oct 23.

PMID:
24155060
22.

HIV-1 tropism testing in subjects achieving undetectable HIV-1 RNA: diagnostic accuracy, viral evolution and compartmentalization.

Pou C, Codoñer FM, Thielen A, Bellido R, Pérez-Álvarez S, Cabrera C, Dalmau J, Curriu M, Lie Y, Noguera-Julian M, Puig J, Martínez-Picado J, Blanco J, Coakley E, Däumer M, Clotet B, Paredes R.

PLoS One. 2013 Aug 1;8(8):e67085. doi: 10.1371/journal.pone.0067085. Print 2013.

23.

Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations.

Jiménez G, Urdiain M, Cifuentes A, López-López A, Blanch AR, Tamames J, Kämpfer P, Kolstø AB, Ramón D, Martínez JF, Codoñer FM, Rosselló-Móra R.

Syst Appl Microbiol. 2013 Sep;36(6):383-91. doi: 10.1016/j.syapm.2013.04.008. Epub 2013 Jun 19.

PMID:
23791203
24.

Genome Sequence of Klebsiella pneumoniae KpQ3, a DHA-1 β-Lactamase-Producing Nosocomial Isolate.

Tobes R, Codoñer FM, López-Camacho E, Salanueva IJ, Manrique M, Brozynska M, Gómez-Gil R, Martínez-Blanch JF, Alvarez-Tejado M, Pareja E, Mingorance J.

Genome Announc. 2013 Jan;1(1). pii: e00167-12. doi: 10.1128/genomeA.00167-12. Epub 2013 Feb 21.

25.

Declining prevalence of HIV-1 drug resistance in antiretroviral treatment-exposed individuals in Western Europe.

De Luca A, Dunn D, Zazzi M, Camacho R, Torti C, Fanti I, Kaiser R, Sönnerborg A, Codoñer FM, Van Laethem K, Vandamme AM, Bansi L, Ghisetti V, van de Vijver DA, Asboe D, Prosperi MC, Di Giambenedetto S; SEHERE collaboration in Chain.

J Infect Dis. 2013 Apr 15;207(8):1216-20. doi: 10.1093/infdis/jit017. Epub 2013 Jan 11.

PMID:
23315324
26.

In-depth characterization of viral isolates from plasma and cells compared with plasma circulating quasispecies in early HIV-1 infection.

Dalmau J, Codoñer FM, Erkizia I, Pino M, Pou C, Paredes R, Clotet B, Martinez-Picado J, Prado JG.

PLoS One. 2012;7(2):e32714. doi: 10.1371/journal.pone.0032714. Epub 2012 Feb 29.

27.

Deep molecular characterization of HIV-1 dynamics under suppressive HAART.

Buzón MJ, Codoñer FM, Frost SD, Pou C, Puertas MC, Massanella M, Dalmau J, Llibre JM, Stevenson M, Blanco J, Clotet B, Paredes R, Martinez-Picado J.

PLoS Pathog. 2011 Oct;7(10):e1002314. doi: 10.1371/journal.ppat.1002314. Epub 2011 Oct 27.

28.

Detection of drug resistance mutations at low plasma HIV-1 RNA load in a European multicentre cohort study.

Prosperi MC, Mackie N, Di Giambenedetto S, Zazzi M, Camacho R, Fanti I, Torti C, Sönnerborg A, Kaiser R, Codoñer FM, Van Laethem K, Bansi L, van de Vijver DA, Geretti AM, De Luca A; SEHERE consortium.

J Antimicrob Chemother. 2011 Aug;66(8):1886-96. doi: 10.1093/jac/dkr171. Epub 2011 May 30.

PMID:
21624929
29.

Added value of deep sequencing relative to population sequencing in heavily pre-treated HIV-1-infected subjects.

Codoñer FM, Pou C, Thielen A, García F, Delgado R, Dalmau D, Álvarez-Tejado M, Ruiz L, Clotet B, Paredes R.

PLoS One. 2011;6(5):e19461. doi: 10.1371/journal.pone.0019461. Epub 2011 May 13.

30.

Influenza C virus surveillance during the first influenza A (H1N1) 2009 pandemic wave in Catalonia, Spain.

Antón A, Marcos MA, Codoñer FM, de Molina P, Martínez A, Cardeñosa N, Godoy P, Torner N, Martínez MJ, Ramón S, Tudó G, Isanta R, Gonzalo V, de Anta MT, Pumarola T.

Diagn Microbiol Infect Dis. 2011 Apr;69(4):419-27. doi: 10.1016/j.diagmicrobio.2010.11.006.

PMID:
21396539
31.

Combined antiretroviral therapy and immune pressure lead to in vivo HIV-1 recombination with ancestral viral genomes.

Buzón MJ, Wrin T, Codoñer FM, Dalmau J, Phung P, Bonjoch A, Coakley E, Clotet B, Martinez-Picado J.

J Acquir Immune Defic Syndr. 2011 Jun 1;57(2):109-17. doi: 10.1097/QAI.0b013e318215ab0a.

PMID:
21372727
32.

Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life.

Wissler L, Codoñer FM, Gu J, Reusch TB, Olsen JL, Procaccini G, Bornberg-Bauer E.

BMC Evol Biol. 2011 Jan 12;11:8. doi: 10.1186/1471-2148-11-8.

33.

Mutational dynamics of murine angiogenin duplicates.

Codoñer FM, Alfonso-Loeches S, Fares MA.

BMC Evol Biol. 2010 Oct 15;10:310. doi: 10.1186/1471-2148-10-310.

34.

Dynamic escape of pre-existing raltegravir-resistant HIV-1 from raltegravir selection pressure.

Codoñer FM, Pou C, Thielen A, García F, Delgado R, Dalmau D, Santos JR, Buzón MJ, Martínez-Picado J, Alvarez-Tejado M, Clotet B, Ruiz L, Paredes R.

Antiviral Res. 2010 Dec;88(3):281-6. doi: 10.1016/j.antiviral.2010.09.016. Epub 2010 Sep 29.

PMID:
20883724
35.

HLA-Cw*03-restricted CD8+ T-cell responses targeting the HIV-1 gag major homology region drive virus immune escape and fitness constraints compensated for by intracodon variation.

Honeyborne I, Codoñer FM, Leslie A, Tudor-Williams G, Luzzi G, Ndung'u T, Walker BD, Goulder PJ, Prado JG.

J Virol. 2010 Nov;84(21):11279-88. doi: 10.1128/JVI.01144-10. Epub 2010 Aug 25.

36.

Two chaperonin systems in bacterial genomes with distinct ecological roles.

Williams TA, Codoñer FM, Toft C, Fares MA.

Trends Genet. 2010 Feb;26(2):47-51. doi: 10.1016/j.tig.2009.11.009. Epub 2009 Dec 28.

PMID:
20036437
37.

Why should we care about molecular coevolution?

Codoñer FM, Fares MA.

Evol Bioinform Online. 2008 Feb 14;4:29-38.

38.

The promiscuous evolutionary history of the family Bromoviridae.

Codoñer FM, Elena SF.

J Gen Virol. 2008 Jul;89(Pt 7):1739-47. doi: 10.1099/vir.0.2008/000166-0.

PMID:
18559945
39.

Reducing the false positive rate in the non-parametric analysis of molecular coevolution.

Codoñer FM, O'Dea S, Fares MA.

BMC Evol Biol. 2008 Apr 10;8:106. doi: 10.1186/1471-2148-8-106.

40.

Experimental evolution of plant RNA viruses.

Elena SF, Agudelo-Romero P, Carrasco P, Codoñer FM, Martín S, Torres-Barceló C, Sanjuán R.

Heredity (Edinb). 2008 May;100(5):478-83. doi: 10.1038/sj.hdy.6801088. Epub 2008 Feb 6. Review.

41.

Selection promotes organ compartmentalization in HIV-1: evidence from gag and pol genes.

Bordería AV, Codoñer FM, Sanjuán R.

Evolution. 2007 Feb;61(2):272-9.

PMID:
17348938
42.
43.
44.

Molecular evolution of the plant virus family Bromoviridae based on RNA3-encoded proteins.

Codoñer FM, Cuevas JM, Sánchez-Navarro JA, Pallás V, Elena SF.

J Mol Evol. 2005 Nov;61(5):697-705. Epub 2005 Oct 6.

PMID:
16211425
45.

Evolutionary relationships among members of the Bromoviridae deduced from whole proteome analysis.

Codoñer FM, Elena SF.

Arch Virol. 2006 Feb;151(2):299-307. Epub 2005 Sep 20.

PMID:
16172839
46.

Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region.

Sanjuán R, Codoñer FM, Moya A, Elena SF.

Evolution. 2004 Jun;58(6):1185-94.

PMID:
15266969

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