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Items: 1 to 50 of 58

1.

Fine-mapping sequence mutations with a major effect on oligosaccharide content in bovine milk.

Liu Z, Wang T, Pryce JE, MacLeod IM, Hayes BJ, Chamberlain AJ, Jagt CV, Reich CM, Mason BA, Rochfort S, Cocks BG.

Sci Rep. 2019 Feb 14;9(1):2137. doi: 10.1038/s41598-019-38488-9.

2.

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.

Wang M, Hancock TP, Chamberlain AJ, Vander Jagt CJ, Pryce JE, Cocks BG, Goddard ME, Hayes BJ.

BMC Genomics. 2018 May 24;19(1):395. doi: 10.1186/s12864-018-4800-0.

3.

Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host.

Shinozuka H, Hettiarachchige IK, Shinozuka M, Cogan NOI, Spangenberg GC, Cocks BG, Forster JW, Sawbridge TI.

Sci Rep. 2017 Aug 22;7(1):9024. doi: 10.1038/s41598-017-07886-2.

4.

Seasonal variation of polar lipid content in bovine milk.

Liu Z, Logan A, Cocks BG, Rochfort S.

Food Chem. 2017 Dec 15;237:865-869. doi: 10.1016/j.foodchem.2017.06.038. Epub 2017 Jun 8.

PMID:
28764079
5.

Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.

Wang M, Hancock TP, MacLeod IM, Pryce JE, Cocks BG, Hayes BJ.

Genet Sel Evol. 2017 Jul 6;49(1):56. doi: 10.1186/s12711-017-0331-4.

6.

Seasonal Variation of Triacylglycerol Profile of Bovine Milk.

Liu Z, Wang J, Cocks BG, Rochfort S.

Metabolites. 2017 Jun 2;7(2). pii: E24. doi: 10.3390/metabo7020024.

7.

Heat Stress in Dairy Cattle Alters Lipid Composition of Milk.

Liu Z, Ezernieks V, Wang J, Arachchillage NW, Garner JB, Wales WJ, Cocks BG, Rochfort S.

Sci Rep. 2017 Apr 19;7(1):961. doi: 10.1038/s41598-017-01120-9.

8.

Including nonadditive genetic effects in mating programs to maximize dairy farm profitability.

Aliloo H, Pryce JE, González-Recio O, Cocks BG, Goddard ME, Hayes BJ.

J Dairy Sci. 2017 Feb;100(2):1203-1222. doi: 10.3168/jds.2016-11261. Epub 2016 Dec 9.

9.

Optimization of a single phase method for lipid extraction from milk.

Liu Z, Rochfort S, Cocks BG.

J Chromatogr A. 2016 Aug 5;1458:145-9. doi: 10.1016/j.chroma.2016.06.055. Epub 2016 Jun 17.

PMID:
27372415
10.

Comparison of Molecular Species Distribution of DHA-Containing Triacylglycerols in Milk and Different Infant Formulas by Liquid Chromatography-Mass Spectrometry.

Liu Z, Cocks BG, Rochfort S.

J Agric Food Chem. 2016 Mar 16;64(10):2134-44. doi: 10.1021/acs.jafc.5b05920. Epub 2016 Mar 4.

PMID:
26902881
11.

Accounting for dominance to improve genomic evaluations of dairy cows for fertility and milk production traits.

Aliloo H, Pryce JE, González-Recio O, Cocks BG, Hayes BJ.

Genet Sel Evol. 2016 Feb 1;48:8. doi: 10.1186/s12711-016-0186-0.

12.

Milk Bottom-Up Proteomics: Method Optimization.

Vincent D, Ezernieks V, Elkins A, Nguyen N, Moate PJ, Cocks BG, Rochfort S.

Front Genet. 2016 Jan 11;6:360. doi: 10.3389/fgene.2015.00360. eCollection 2015.

13.

Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle.

Raven LA, Cocks BG, Kemper KE, Chamberlain AJ, Vander Jagt CJ, Goddard ME, Hayes BJ.

Mamm Genome. 2016 Feb;27(1-2):81-97. doi: 10.1007/s00335-015-9613-8. Epub 2015 Nov 27.

PMID:
26613780
14.

Identification and quantification of triacylglycerols containing n-3 long-chain polyunsaturated fatty acids in bovine milk.

Liu Z, Moate P, Ezerniks V, Cocks BG, Rochfort S.

J Dairy Sci. 2015 Dec;98(12):8473-85. doi: 10.3168/jds.2015-9889. Epub 2015 Oct 21.

15.

Validation of markers with non-additive effects on milk yield and fertility in Holstein and Jersey cows.

Aliloo H, Pryce JE, González-Recio O, Cocks BG, Hayes BJ.

BMC Genet. 2015 Jul 22;16:89. doi: 10.1186/s12863-015-0241-9.

16.

Gene expression in the mammary gland of the tammar wallaby during the lactation cycle reveals conserved mechanisms regulating mammalian lactation.

Vander Jagt CJ, Whitley JC, Cocks BG, Goddard ME.

Reprod Fertil Dev. 2015 Feb 23. doi: 10.1071/RD14210. [Epub ahead of print]

PMID:
25701950
17.

Milk-derived ribonuclease 5 preparations induce myogenic differentiation in vitro and muscle growth in vivo.

Knight MI, Tester AM, McDonagh MB, Brown A, Cottrell J, Wang J, Hobman P, Cocks BG.

J Dairy Sci. 2014 Dec;97(12):7325-33. doi: 10.3168/jds.2014-7901. Epub 2014 Oct 3.

18.

Genetic variants in mammary development, prolactin signalling and involution pathways explain considerable variation in bovine milk production and milk composition.

Raven LA, Cocks BG, Goddard ME, Pryce JE, Hayes BJ.

Genet Sel Evol. 2014 Apr 29;46:29. doi: 10.1186/1297-9686-46-29.

19.
20.

Metagenomic predictions: from microbiome to complex health and environmental phenotypes in humans and cattle.

Ross EM, Moate PJ, Marett LC, Cocks BG, Hayes BJ.

PLoS One. 2013 Sep 4;8(9):e73056. doi: 10.1371/journal.pone.0073056. eCollection 2013.

21.

Investigating the effect of two methane-mitigating diets on the rumen microbiome using massively parallel sequencing.

Ross EM, Moate PJ, Marett L, Cocks BG, Hayes BJ.

J Dairy Sci. 2013 Sep;96(9):6030-46. doi: 10.3168/jds.2013-6766. Epub 2013 Jul 17.

22.

Genes of the RNASE5 pathway contain SNP associated with milk production traits in dairy cattle.

Raven LA, Cocks BG, Pryce JE, Cottrell JJ, Hayes BJ.

Genet Sel Evol. 2013 Jul 16;45:25. doi: 10.1186/1297-9686-45-25.

23.

High throughput whole rumen metagenome profiling using untargeted massively parallel sequencing.

Ross EM, Moate PJ, Bath CR, Davidson SE, Sawbridge TI, Guthridge KM, Cocks BG, Hayes BJ.

BMC Genet. 2012 Jul 2;13:53. doi: 10.1186/1471-2156-13-53.

24.

Ancient antimicrobial peptides kill antibiotic-resistant pathogens: Australian mammals provide new options.

Wang J, Wong ES, Whitley JC, Li J, Stringer JM, Short KR, Renfree MB, Belov K, Cocks BG.

PLoS One. 2011;6(8):e24030. doi: 10.1371/journal.pone.0024030. Epub 2011 Aug 30.

25.

Global survey of the bovine salivary proteome: integrating multidimensional prefractionation, targeted, and glycocapture strategies.

Ang CS, Binos S, Knight MI, Moate PJ, Cocks BG, McDonagh MB.

J Proteome Res. 2011 Nov 4;10(11):5059-69. doi: 10.1021/pr200516d. Epub 2011 Sep 28.

PMID:
21902196
26.

Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development.

Renfree MB, Papenfuss AT, Deakin JE, Lindsay J, Heider T, Belov K, Rens W, Waters PD, Pharo EA, Shaw G, Wong ES, Lefèvre CM, Nicholas KR, Kuroki Y, Wakefield MJ, Zenger KR, Wang C, Ferguson-Smith M, Nicholas FW, Hickford D, Yu H, Short KR, Siddle HV, Frankenberg SR, Chew KY, Menzies BR, Stringer JM, Suzuki S, Hore TA, Delbridge ML, Patel HR, Mohammadi A, Schneider NY, Hu Y, O'Hara W, Al Nadaf S, Wu C, Feng ZP, Cocks BG, Wang J, Flicek P, Searle SM, Fairley S, Beal K, Herrero J, Carone DM, Suzuki Y, Sugano S, Toyoda A, Sakaki Y, Kondo S, Nishida Y, Tatsumoto S, Mandiou I, Hsu A, McColl KA, Lansdell B, Weinstock G, Kuczek E, McGrath A, Wilson P, Men A, Hazar-Rethinam M, Hall A, Davis J, Wood D, Williams S, Sundaravadanam Y, Muzny DM, Jhangiani SN, Lewis LR, Morgan MB, Okwuonu GO, Ruiz SJ, Santibanez J, Nazareth L, Cree A, Fowler G, Kovar CL, Dinh HH, Joshi V, Jing C, Lara F, Thornton R, Chen L, Deng J, Liu Y, Shen JY, Song XZ, Edson J, Troon C, Thomas D, Stephens A, Yapa L, Levchenko T, Gibbs RA, Cooper DW, Speed TP, Fujiyama A, Graves JA, O'Neill RJ, Pask AJ, Forrest SM, Worley KC.

Genome Biol. 2011 Aug 29;12(8):R81. doi: 10.1186/gb-2011-12-8-r81. Erratum in: Genome Biol. 2011;12(12):414. Patel, Hardip R [added].

27.

Conservation of the ST6Gal I gene and its expression in the mammary gland.

Maksimovic J, Sharp JA, Nicholas KR, Cocks BG, Savin K.

Glycobiology. 2011 Apr;21(4):467-81. doi: 10.1093/glycob/cwq185. Epub 2010 Nov 22.

PMID:
21098517
28.

A neurotropic herpesvirus infecting the gastropod, abalone, shares ancestry with oyster herpesvirus and a herpesvirus associated with the amphioxus genome.

Savin KW, Cocks BG, Wong F, Sawbridge T, Cogan N, Savage D, Warner S.

Virol J. 2010 Nov 10;7:308. doi: 10.1186/1743-422X-7-308.

29.

NK cell regulation of T cell-mediated responses.

Zingoni A, Sornasse T, Cocks BG, Tanaka Y, Santoni A, Lanier LL.

Mol Immunol. 2005 Feb;42(4):451-4. Review.

PMID:
15607797
30.

Cross-talk between activated human NK cells and CD4+ T cells via OX40-OX40 ligand interactions.

Zingoni A, Sornasse T, Cocks BG, Tanaka Y, Santoni A, Lanier LL.

J Immunol. 2004 Sep 15;173(6):3716-24.

31.

Complexity of inflammatory responses in endothelial cells and vascular smooth muscle cells determined by microarray analysis.

Bandman O, Coleman RT, Loring JF, Seilhamer JJ, Cocks BG.

Ann N Y Acad Sci. 2002 Dec;975:77-90.

PMID:
12538156
32.

Molecular and functional characterization of mouse signaling lymphocytic activation molecule (SLAM): differential expression and responsiveness in Th1 and Th2 cells.

Castro AG, Hauser TM, Cocks BG, Abrams J, Zurawski S, Churakova T, Zonin F, Robinson D, Tangye SG, Aversa G, Nichols KE, de Vries JE, Lanier LL, O'Garra A.

J Immunol. 1999 Dec 1;163(11):5860-70.

33.

Reversal of human allergic T helper 2 responses by engagement of signaling lymphocytic activation molecule.

Carballido JM, Aversa G, Kaltoft K, Cocks BG, Punnonen J, Yssel H, Thestrup-Pedersen K, de Vries JE.

J Immunol. 1997 Nov 1;159(9):4316-21.

PMID:
9379027
34.

Increased expression of signaling lymphocytic activation molecule in patients with rheumatoid arthritis and its role in the regulation of cytokine production in rheumatoid synovium.

Isomäki P, Aversa G, Cocks BG, Luukkainen R, Saario R, Toivanen P, de Vries JE, Punnonen J.

J Immunol. 1997 Sep 15;159(6):2986-93.

PMID:
9300723
36.

SLAM and its role in T cell activation and Th cell responses.

Aversa G, Carballido J, Punnonen J, Chang CC, Hauser T, Cocks BG, De Vries JE.

Immunol Cell Biol. 1997 Apr;75(2):202-5.

PMID:
9107577
37.

Soluble and membrane-bound forms of signaling lymphocytic activation molecule (SLAM) induce proliferation and Ig synthesis by activated human B lymphocytes.

Punnonen J, Cocks BG, Carballido JM, Bennett B, Peterson D, Aversa G, de Vries JE.

J Exp Med. 1997 Mar 17;185(6):993-1004.

38.

Identification of a novel selD homolog from eukaryotes, bacteria, and archaea: is there an autoregulatory mechanism in selenocysteine metabolism?

Guimarães MJ, Peterson D, Vicari A, Cocks BG, Copeland NG, Gilbert DJ, Jenkins NA, Ferrick DA, Kastelein RA, Bazan JF, Zlotnik A.

Proc Natl Acad Sci U S A. 1996 Dec 24;93(26):15086-91.

40.

A novel receptor involved in T-cell activation.

Cocks BG, Chang CC, Carballido JM, Yssel H, de Vries JE, Aversa G.

Nature. 1995 Jul 20;376(6537):260-3.

PMID:
7617038
41.

Molecular cloning and functional characterization of human lymphotactin.

Kennedy J, Kelner GS, Kleyensteuber S, Schall TJ, Weiss MC, Yssel H, Schneider PV, Cocks BG, Bacon KB, Zlotnik A.

J Immunol. 1995 Jul 1;155(1):203-9.

PMID:
7602097
42.

CD40 ligand-CD40 interaction in Ig isotype switching in mature and immature human B cells.

Aversa G, Punnonen J, Carballido JM, Cocks BG, de Vries JE.

Semin Immunol. 1994 Oct;6(5):295-301. Review.

PMID:
7532459
43.

Role of interleukin-4 and interleukin-13 in synthesis of IgE and expression of CD23 by human B cells.

Punnonen J, Aversa G, Cocks BG, de Vries JE.

Allergy. 1994 Sep;49(8):576-86. Review. No abstract available.

PMID:
7544548
44.

Contact-mediated signals and cytokines involved in B-cell activation and isotype switching in pre-B and mature B cells.

Aversa G, Cocks BG, Punnonen J, Carballido JM, de Vries JE.

Res Immunol. 1994 Mar-Apr;145(3):222-6; discussion 244-9. Review. No abstract available.

PMID:
7527579
45.

The role of T/B cell interactions and cytokines in the regulation of human IgE synthesis.

de Vries JE, Punnonen J, Cocks BG, Aversa G.

Semin Immunol. 1993 Dec;5(6):431-9. Review.

PMID:
7510139
46.
47.

Regulation of the human IgE response by IL4 and IL13.

de Vries JE, Punnonen J, Cocks BG, de Waal Malefyt R, Aversa G.

Res Immunol. 1993 Oct;144(8):597-601. Review. No abstract available.

PMID:
7905652
48.

IL-13 induces proliferation and differentiation of human B cells activated by the CD40 ligand.

Cocks BG, de Waal Malefyt R, Galizzi JP, de Vries JE, Aversa G.

Int Immunol. 1993 Jun;5(6):657-63.

PMID:
7688562
49.

Interleukin 13, a T-cell-derived cytokine that regulates human monocyte and B-cell function.

McKenzie AN, Culpepper JA, de Waal Malefyt R, Brière F, Punnonen J, Aversa G, Sato A, Dang W, Cocks BG, Menon S, et al.

Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3735-9.

50.

Interleukin 13 induces interleukin 4-independent IgG4 and IgE synthesis and CD23 expression by human B cells.

Punnonen J, Aversa G, Cocks BG, McKenzie AN, Menon S, Zurawski G, de Waal Malefyt R, de Vries JE.

Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3730-4.

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