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Detection of high-risk human papillomavirus infection in tonsillar specimens using 2 commercially available assays.

Cockerill CC, Orvidas LJ, Moore EJ, Binnicker MJ, Duresko BJ, Espy MJ, Cockerill FR, Tombers NM, Pritt BS.

Diagn Microbiol Infect Dis. 2016 Dec;86(4):365-368. doi: 10.1016/j.diagmicrobio.2016.08.014. Epub 2016 Aug 21.


Next generation sequencing in clinical diagnostics: experiences of early adopters.

Lyon E, Cockerill FR 3rd, Bale SJ, Beadling C, Bry L, Hagenkord J, Kulkarni S, Press R, Palomaki GE.

Clin Chem. 2015 Jan;61(1):41-9. doi: 10.1373/clinchem.2014.222687. Epub 2014 Nov 24. No abstract available.


Inhibition controls for qualitative real-time PCR assays: are they necessary for all specimen matrices?

Buckwalter SP, Sloan LM, Cunningham SA, Espy MJ, Uhl JR, Jones MF, Vetter EA, Mandrekar J, Cockerill FR 3rd, Pritt BS, Patel R, Wengenack NL.

J Clin Microbiol. 2014 Jun;52(6):2139-43. doi: 10.1128/JCM.03389-13. Epub 2014 Apr 16.


PCR-electrospray ionization mass spectrometry for direct detection of pathogens and antimicrobial resistance from heart valves in patients with infective endocarditis.

Brinkman CL, Vergidis P, Uhl JR, Pritt BS, Cockerill FR, Steckelberg JM, Baddour LM, Maleszewski JJ, Edwards WD, Sampath R, Patel R.

J Clin Microbiol. 2013 Jul;51(7):2040-6. doi: 10.1128/JCM.00304-13. Epub 2013 Apr 17.


Effectiveness of patient-collected swabs for influenza testing.

Dhiman N, Miller RM, Finley JL, Sztajnkrycer MD, Nestler DM, Boggust AJ, Jenkins SM, Smith TF, Wilson JW, Cockerill FR 3rd, Pritt BS.

Mayo Clin Proc. 2012 Jun;87(6):548-54. doi: 10.1016/j.mayocp.2012.02.011. Epub 2012 May 1.


Evaluation of the Bruker Biotyper and Vitek MS matrix-assisted laser desorption ionization-time of flight mass spectrometry systems for identification of nonfermenting gram-negative bacilli isolated from cultures from cystic fibrosis patients.

Marko DC, Saffert RT, Cunningham SA, Hyman J, Walsh J, Arbefeville S, Howard W, Pruessner J, Safwat N, Cockerill FR, Bossler AD, Patel R, Richter SS.

J Clin Microbiol. 2012 Jun;50(6):2034-9. doi: 10.1128/JCM.00330-12. Epub 2012 Apr 11.


Optimized pathogen detection with 30- compared to 20-milliliter blood culture draws.

Patel R, Vetter EA, Harmsen WS, Schleck CD, Fadel HJ, Cockerill FR 3rd.

J Clin Microbiol. 2011 Dec;49(12):4047-51. doi: 10.1128/JCM.01314-11. Epub 2011 Oct 5.


Non-treponemal serologic tests: a supplemental, not confirmatory testing approach.

Binnicker MJ, Yao JD, Cockerill FR 3rd.

Clin Infect Dis. 2011 Jan 15;52(2):274-5; author reply 275-6. doi: 10.1093/cid/ciq127. No abstract available.


Effect of carbon dioxide on broth microdilution susceptibility testing of Brucella spp.

Lonsway DR, Jevitt LA, Uhl JR, Cockerill FR 3rd, Anderson ME, Sullivan MM, De BK, Edwards JR, Patel JB.

J Clin Microbiol. 2010 Mar;48(3):952-6. doi: 10.1128/JCM.01860-09. Epub 2009 Dec 23.


Tuberculosis attributed to household contacts in the Philippines.

Sia IG, Orillaza RB, St Sauver JL, Quelapio ID, Lahr BD, AlcaƱeses RS, Wilson WR, Cockerill FR, Balane GI, Mangubat NV, Wengenack NL, Tupasi TE.

Int J Tuberc Lung Dis. 2010 Jan;14(1):122-5.


Cephalosporin MIC distribution of extended-spectrum-{beta}-lactamase- and pAmpC-producing Escherichia coli and Klebsiella species.

Kohner PC, Robberts FJ, Cockerill FR 3rd, Patel R.

J Clin Microbiol. 2009 Aug;47(8):2419-25. doi: 10.1128/JCM.00508-09. Epub 2009 Jun 3.


Real-time PCR vs standard culture detection of group A beta-hemolytic streptococci at various anatomic sites in tonsillectomy patients.

Lee JH, Uhl JR, Cockerill FR 3rd, Weaver AL, Orvidas LJ.

Arch Otolaryngol Head Neck Surg. 2008 Nov;134(11):1177-81. doi: 10.1001/archotol.134.11.1177.


Bivalvular Bartonella henselae prosthetic valve endocarditis.

Vikram HR, Bacani AK, DeValeria PA, Cunningham SA, Cockerill FR 3rd.

J Clin Microbiol. 2007 Dec;45(12):4081-4. Epub 2007 Oct 17.


Quantitative real-time polymerase chain reaction for evaluating DNAemia due to cytomegalovirus, Epstein-Barr virus, and BK virus in solid-organ transplant recipients.

Smith TF, Espy MJ, Mandrekar J, Jones MF, Cockerill FR, Patel R.

Clin Infect Dis. 2007 Oct 15;45(8):1056-61. Epub 2007 Sep 12. Review.


Sonication of removed hip and knee prostheses for diagnosis of infection.

Trampuz A, Piper KE, Jacobson MJ, Hanssen AD, Unni KK, Osmon DR, Mandrekar JN, Cockerill FR, Steckelberg JM, Greenleaf JF, Patel R.

N Engl J Med. 2007 Aug 16;357(7):654-63.


Age- and sex-associated trends in bloodstream infection: a population-based study in Olmsted County, Minnesota.

Uslan DZ, Crane SJ, Steckelberg JM, Cockerill FR 3rd, St Sauver JL, Wilson WR, Baddour LM.

Arch Intern Med. 2007 Apr 23;167(8):834-9.


Fungi, mycobacteria, zoonotic and other organisms in prosthetic joint infection.

Marculescu CE, Berbari EF, Cockerill FR 3rd, Osmon DR.

Clin Orthop Relat Res. 2006 Oct;451:64-72. Review.


Unusual aerobic and anaerobic bacteria associated with prosthetic joint infections.

Marculescu CE, Berbari EF, Cockerill FR 3rd, Osmon DR.

Clin Orthop Relat Res. 2006 Oct;451:55-63. Review.


Bronchoscopy in ventilator-associated pneumonia: agreement of calibrated loop and serial dilution.

Afessa B, Hubmayr RD, Vetter EA, Keegan MT, Swanson KL, Baddour LM, Cockerill FR 3rd, Peters SG.

Am J Respir Crit Care Med. 2006 Jun 1;173(11):1229-32. Epub 2006 Mar 9.


Sonication of explanted prosthetic components in bags for diagnosis of prosthetic joint infection is associated with risk of contamination.

Trampuz A, Piper KE, Hanssen AD, Osmon DR, Cockerill FR, Steckelberg JM, Patel R.

J Clin Microbiol. 2006 Feb;44(2):628-31.


Real-time PCR in clinical microbiology: applications for routine laboratory testing.

Espy MJ, Uhl JR, Sloan LM, Buckwalter SP, Jones MF, Vetter EA, Yao JD, Wengenack NL, Rosenblatt JE, Cockerill FR 3rd, Smith TF.

Clin Microbiol Rev. 2006 Jan;19(1):165-256. Review. Erratum in: Clin Microbiol Rev. 2006 Jul;19(3):595.


Real-time PCR: overview and applications.

Houghton SG, Cockerill FR 3rd.

Surgery. 2006 Jan;139(1):1-5. No abstract available.


Use of the Roche LightCycler Strep B assay for detection of group B Streptococcus from vaginal and rectal swabs.

Uhl JR, Vetter EA, Boldt KL, Johnston BW, Ramin KD, Adams MJ, Ferrieri P, Reischl U, Cockerill FR 3rd.

J Clin Microbiol. 2005 Aug;43(8):4046-51.


Detection of Tropheryma whipplei DNA in clinical specimens by LightCycler real-time PCR.

Sloan LM, Rosenblatt JE, Cockerill FR 3rd.

J Clin Microbiol. 2005 Jul;43(7):3516-8.


Purification and characterization of Mycobacterium tuberculosis KatG, KatG(S315T), and Mycobacterium bovis KatG(R463L).

Wengenack NL, Lane BD, Hill PJ, Uhl JR, Lukat-Rodgers GS, Hall L, Roberts GD, Cockerill FR 3rd, Brennan PJ, Rodgers KR, Belisle JT, Rusnak F.

Protein Expr Purif. 2004 Aug;36(2):232-43.


Optimal testing parameters for blood cultures.

Cockerill FR 3rd, Wilson JW, Vetter EA, Goodman KM, Torgerson CA, Harmsen WS, Schleck CD, Ilstrup DM, Washington JA 2nd, Wilson WR.

Clin Infect Dis. 2004 Jun 15;38(12):1724-30. Epub 2004 May 25.


Comparison of the Roche LightCycler vanA/vanB detection assay and culture for detection of vancomycin-resistant enterococci from perianal swabs.

Sloan LM, Uhl JR, Vetter EA, Schleck CD, Harmsen WS, Manahan J, Thompson RL, Rosenblatt JE, Cockerill FR 3rd.

J Clin Microbiol. 2004 Jun;42(6):2636-43.


Response of the clinical microbiology laboratory to emerging (new) and reemerging infectious diseases.

Cockerill FR 3rd, Smith TF.

J Clin Microbiol. 2004 Jun;42(6):2359-65. Review. No abstract available.


Evidence of nanobacterial-like structures in calcified human arteries and cardiac valves.

Miller VM, Rodgers G, Charlesworth JA, Kirkland B, Severson SR, Rasmussen TE, Yagubyan M, Rodgers JC, Cockerill FR 3rd, Folk RL, Rzewuska-Lech E, Kumar V, Farell-Baril G, Lieske JC.

Am J Physiol Heart Circ Physiol. 2004 Sep;287(3):H1115-24. Epub 2004 May 13.


Evaluation of the MagNA pure LC instrument for extraction of hepatitis C virus RNA for the COBAS AMPLICOR Hepatitis C Virus Test, version 2.0.

Germer JJ, Lins MM, Jensen ME, Harmsen WS, Ilstrup DM, Mitchell PS, Cockerill FR 3rd, Patel R.

J Clin Microbiol. 2003 Aug;41(8):3503-8.


Comparison of LightCycler PCR, rapid antigen immunoassay, and culture for detection of group A streptococci from throat swabs.

Uhl JR, Adamson SC, Vetter EA, Schleck CD, Harmsen WS, Iverson LK, Santrach PJ, Henry NK, Cockerill FR.

J Clin Microbiol. 2003 Jan;41(1):242-9.


Clinical features of patients with novel Yersinia species.

Loftus CG, Harewood GC, Cockerill FR 3rd, Murray JA.

Dig Dis Sci. 2002 Dec;47(12):2805-10.


Oxidative stress increases susceptibility of Mycobacterium tuberculosis to isoniazid.

Bulatovic VM, Wengenack NL, Uhl JR, Hall L, Roberts GD, Cockerill FR 3rd, Rusnak F.

Antimicrob Agents Chemother. 2002 Sep;46(9):2765-71.


Detection of Bacillus anthracis DNA by LightCycler PCR.

Bell CA, Uhl JR, Hadfield TL, David JC, Meyer RF, Smith TF, Cockerill FR 3rd.

J Clin Microbiol. 2002 Aug;40(8):2897-902.


Application of rapid-cycle real-time polymerase chain reaction for the detection of microbial pathogens: the Mayo-Roche Rapid Anthrax Test.

Uhl JR, Bell CA, Sloan LM, Espy MJ, Smith TF, Rosenblatt JE, Cockerill FR 3rd.

Mayo Clin Proc. 2002 Jul;77(7):673-80. Review.


Confronting bioterrorism: physicians on the front line.

Varkey P, Poland GA, Cockerill FR 3rd, Smith TF, Hagen PT.

Mayo Clin Proc. 2002 Jul;77(7):661-72. Review.


Comparison of line probe assay and DNA sequencing of 5' untranslated region for genotyping hepatitis C virus: description of novel line probe patterns.

Mitchell PS, Sloan LM, Majewski DW, Rys PN, Heimgartner PJ, Rosenblatt JE, Cockerill FR 3rd, Smith TF, Patel R.

Diagn Microbiol Infect Dis. 2002 Mar;42(3):175-9.


Frequency of isolation of Staphylococcus lugdunensis in consecutive urine cultures and relationship to urinary tract infection.

Haile DT, Hughes J, Vetter E, Kohner P, Snyder R, Patel R, Cockerill FR 3rd.

J Clin Microbiol. 2002 Feb;40(2):654-6.


Susceptibility testing. Phenotypic and genotypic tests for bacteria and mycobacteria.

Louie M, Cockerill FR 3rd.

Infect Dis Clin North Am. 2001 Dec;15(4):1205-26. Review.


Multiplex LightCycler PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis in nasopharyngeal specimens.

Sloan LM, Hopkins MK, Mitchell PS, Vetter EA, Rosenblatt JE, Harmsen WS, Cockerill FR, Patel R.

J Clin Microbiol. 2002 Jan;40(1):96-100.


Culture with BACTEC Peds Plus/F bottle compared with conventional methods for detection of bacteria in synovial fluid.

Hughes JG, Vetter EA, Patel R, Schleck CD, Harmsen S, Turgeant LT, Cockerill FR 3rd.

J Clin Microbiol. 2001 Dec;39(12):4468-71.


Two cases of non-O157:H7 Escherichia coli hemolytic uremic syndrome caused by urinary tract infection.

Hogan MC, Gloor JM, Uhl JR, Cockerill FR, Milliner DS.

Am J Kidney Dis. 2001 Oct;38(4):E22.


Direct identification of bacteria from positive blood cultures by amplification and sequencing of the 16S rRNA gene: evaluation of BACTEC 9240 instrument true-positive and false-positive results.

Qian Q, Tang YW, Kolbert CP, Torgerson CA, Hughes JG, Vetter EA, Harmsen WS, Montgomery SO, Cockerill FR 3rd, Persing DH.

J Clin Microbiol. 2001 Oct;39(10):3578-82.


In vivo and in vitro studies of cytosolic phospholipase A2 expression in Helicobacter pylori infection.

Nardone G, Holicky EL, Uhl JR, Sabatino L, Staibano S, Rocco A, Colantuoni V, Manzo BA, Romano M, Budillon G, Cockerill FR 3rd, Miller LJ.

Infect Immun. 2001 Sep;69(9):5857-63.


Detection of herpes simplex virus DNA in genital and dermal specimens by LightCycler PCR after extraction using the IsoQuick, MagNA Pure, and BioRobot 9604 methods.

Espy MJ, Rys PN, Wold AD, Uhl JR, Sloan LM, Jenkins GD, Ilstrup DM, Cockerill FR 3rd, Patel R, Rosenblatt JE, Smith TF.

J Clin Microbiol. 2001 Jun;39(6):2233-6.


Natural history of vancomycin-resistant enterococcal colonization in liver and kidney transplant recipients.

Patel R, Allen SL, Manahan JM, Wright AJ, Krom RA, Wiesner RH, Persing DH, Cockerill FR, Thompson RL.

Liver Transpl. 2001 Jan;7(1):27-31.

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