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Items: 1 to 50 of 97

1.

Unusual Patterns of Mitochondrial Inheritance in the Brown Alga Ectocarpus.

Mignerot L, Nagasato C, Peters AF, Perrineau MM, Scornet D, Pontheaux F, Djema W, Badis Y, Motomura T, Coelho SM, Cock JM.

Mol Biol Evol. 2019 Dec 1;36(12):2778-2789. doi: 10.1093/molbev/msz186.

PMID:
31504759
2.

A key role for sex chromosomes in the regulation of parthenogenesis in the brown alga Ectocarpus.

Mignerot L, Avia K, Luthringer R, Lipinska AP, Peters AF, Cock JM, Coelho SM.

PLoS Genet. 2019 Jun 13;15(6):e1008211. doi: 10.1371/journal.pgen.1008211. eCollection 2019 Jun.

3.

Megaviruses: An involvement in phytohormone receptor gene transfer in brown algae?

Kabbara S, Bidon B, Kilani J, Dugé de Bernonville T, Clastre M, Courdavault V, Cock JM, Papon N.

Gene. 2019 Jul 1;704:149-151. doi: 10.1016/j.gene.2019.04.055. Epub 2019 Apr 19. No abstract available.

PMID:
31009683
4.

Correction to: Rapid turnover of life-cycle-related genes in the brown algae.

Lipinska AP, Serrano-Serrano ML, Cormier A, Peters AF, Kogame K, Cock JM, Coelho SM.

Genome Biol. 2019 Feb 22;20(1):44. doi: 10.1186/s13059-019-1657-8.

5.

Rapid turnover of life-cycle-related genes in the brown algae.

Lipinska AP, Serrano-Serrano ML, Cormier A, Peters AF, Kogame K, Cock JM, Coelho SM.

Genome Biol. 2019 Feb 14;20(1):35. doi: 10.1186/s13059-019-1630-6. Erratum in: Genome Biol. 2019 Feb 22;20(1):44.

6.

Origin and evolution of sex-determination systems in the brown algae.

Coelho SM, Mignerot L, Cock JM.

New Phytol. 2019 Jun;222(4):1751-1756. doi: 10.1111/nph.15694. Epub 2019 Feb 21. Review.

PMID:
30667071
7.

Convergent recruitment of TALE homeodomain life cycle regulators to direct sporophyte development in land plants and brown algae.

Arun A, Coelho SM, Peters AF, Bourdareau S, Pérès L, Scornet D, Strittmatter M, Lipinska AP, Yao H, Godfroy O, Montecinos GJ, Avia K, Macaisne N, Troadec C, Bendahmane A, Cock JM.

Elife. 2019 Jan 15;8. pii: e43101. doi: 10.7554/eLife.43101.

8.

Diversity and Evolution of Sensor Histidine Kinases in Eukaryotes.

Kabbara S, Hérivaux A, Dugé de Bernonville T, Courdavault V, Clastre M, Gastebois A, Osman M, Hamze M, Cock JM, Schaap P, Papon N.

Genome Biol Evol. 2019 Jan 1;11(1):86-108. doi: 10.1093/gbe/evy213.

9.

UV Chromosomes and Haploid Sexual Systems.

Coelho SM, Gueno J, Lipinska AP, Cock JM, Umen JG.

Trends Plant Sci. 2018 Sep;23(9):794-807. doi: 10.1016/j.tplants.2018.06.005. Epub 2018 Jul 12. Review.

10.

Genetic Diversity in the UV Sex Chromosomes of the Brown Alga Ectocarpus.

Avia K, Lipinska AP, Mignerot L, Montecinos AE, Jamy M, Ahmed S, Valero M, Peters AF, Cock JM, Roze D, Coelho SM.

Genes (Basel). 2018 Jun 6;9(6). pii: E286. doi: 10.3390/genes9060286.

11.

DISTAG/TBCCd1 Is Required for Basal Cell Fate Determination in Ectocarpus.

Godfroy O, Uji T, Nagasato C, Lipinska AP, Scornet D, Peters AF, Avia K, Colin S, Mignerot L, Motomura T, Cock JM, Coelho SM.

Plant Cell. 2017 Dec;29(12):3102-3122. doi: 10.1105/tpc.17.00440. Epub 2017 Dec 5.

12.

Biotic interactions as drivers of algal origin and evolution.

Brodie J, Ball SG, Bouget FY, Chan CX, De Clerck O, Cock JM, Gachon C, Grossman AR, Mock T, Raven JA, Saha M, Smith AG, Vardi A, Yoon HS, Bhattacharya D.

New Phytol. 2017 Nov;216(3):670-681. doi: 10.1111/nph.14760. Epub 2017 Aug 31. Review.

13.

The Algal Revolution.

Brodie J, Chan CX, De Clerck O, Cock JM, Coelho SM, Gachon C, Grossman AR, Mock T, Raven JA, Smith AG, Yoon HS, Bhattacharya D.

Trends Plant Sci. 2017 Aug;22(8):726-738. doi: 10.1016/j.tplants.2017.05.005. Epub 2017 Jun 10. Review.

PMID:
28610890
14.

Multiple gene movements into and out of haploid sex chromosomes.

Lipinska AP, Toda NRT, Heesch S, Peters AF, Cock JM, Coelho SM.

Genome Biol. 2017 Jun 8;18(1):104. doi: 10.1186/s13059-017-1201-7.

15.

Rapid Evolution of microRNA Loci in the Brown Algae.

Cock JM, Liu F, Duan D, Bourdareau S, Lipinska AP, Coelho SM, Tarver JE.

Genome Biol Evol. 2017 Mar 1;9(3):740-749. doi: 10.1093/gbe/evx038.

16.

High-density genetic map and identification of QTLs for responses to temperature and salinity stresses in the model brown alga Ectocarpus.

Avia K, Coelho SM, Montecinos GJ, Cormier A, Lerck F, Mauger S, Faugeron S, Valero M, Cock JM, Boudry P.

Sci Rep. 2017 Mar 3;7:43241. doi: 10.1038/srep43241.

17.

The Ectocarpus IMMEDIATE UPRIGHT gene encodes a member of a novel family of cysteine-rich proteins with an unusual distribution across the eukaryotes.

Macaisne N, Liu F, Scornet D, Peters AF, Lipinska A, Perrineau MM, Henry A, Strittmatter M, Coelho SM, Cock JM.

Development. 2017 Feb 1;144(3):409-418. doi: 10.1242/dev.141523. Epub 2017 Jan 3.

18.

Re-annotation, improved large-scale assembly and establishment of a catalogue of noncoding loci for the genome of the model brown alga Ectocarpus.

Cormier A, Avia K, Sterck L, Derrien T, Wucher V, Andres G, Monsoor M, Godfroy O, Lipinska A, Perrineau MM, Van De Peer Y, Hitte C, Corre E, Coelho SM, Cock JM.

New Phytol. 2017 Apr;214(1):219-232. doi: 10.1111/nph.14321. Epub 2016 Nov 21.

19.

Inflammation Triggers Zeb1-Dependent Escape from Tumor Latency.

De Cock JM, Shibue T, Dongre A, Keckesova Z, Reinhardt F, Weinberg RA.

Cancer Res. 2016 Dec 1;76(23):6778-6784. Epub 2016 Aug 16.

20.

Development of PCR-Based Markers to Determine the Sex of Kelps.

Lipinska AP, Ahmed S, Peters AF, Faugeron S, Cock JM, Coelho SM.

PLoS One. 2015 Oct 23;10(10):e0140535. doi: 10.1371/journal.pone.0140535. eCollection 2015.

21.

The Pseudoautosomal Regions of the U/V Sex Chromosomes of the Brown Alga Ectocarpus Exhibit Unusual Features.

Luthringer R, Lipinska AP, Roze D, Cormier A, Macaisne N, Peters AF, Cock JM, Coelho SM.

Mol Biol Evol. 2015 Nov;32(11):2973-85. doi: 10.1093/molbev/msv173. Epub 2015 Aug 6.

22.

microRNAs and the evolution of complex multicellularity: identification of a large, diverse complement of microRNAs in the brown alga Ectocarpus.

Tarver JE, Cormier A, Pinzón N, Taylor RS, Carré W, Strittmatter M, Seitz H, Coelho SM, Cock JM.

Nucleic Acids Res. 2015 Jul 27;43(13):6384-98. doi: 10.1093/nar/gkv578. Epub 2015 Jun 22.

23.

Evolution and maintenance of haploid-diploid life cycles in natural populations: The case of the marine brown alga Ectocarpus.

Couceiro L, Le Gac M, Hunsperger HM, Mauger S, Destombe C, Cock JM, Ahmed S, Coelho SM, Valero M, Peters AF.

Evolution. 2015 Jul;69(7):1808-22. doi: 10.1111/evo.12702. Epub 2015 Jul 15.

PMID:
26096000
24.

Genome-wide comparison of ultraviolet and ethyl methanesulphonate mutagenesis methods for the brown alga Ectocarpus.

Godfroy O, Peters AF, Coelho SM, Cock JM.

Mar Genomics. 2015 Dec;24 Pt 1:109-13. doi: 10.1016/j.margen.2015.03.007. Epub 2015 Apr 7.

PMID:
25861732
25.

Sexual dimorphism and the evolution of sex-biased gene expression in the brown alga ectocarpus.

Lipinska A, Cormier A, Luthringer R, Peters AF, Corre E, Gachon CM, Cock JM, Coelho SM.

Mol Biol Evol. 2015 Jun;32(6):1581-97. doi: 10.1093/molbev/msv049. Epub 2015 Feb 27.

PMID:
25725430
26.

A haploid system of sex determination in the brown alga Ectocarpus sp.

Ahmed S, Cock JM, Pessia E, Luthringer R, Cormier A, Robuchon M, Sterck L, Peters AF, Dittami SM, Corre E, Valero M, Aury JM, Roze D, Van de Peer Y, Bothwell J, Marais GA, Coelho SM.

Curr Biol. 2014 Sep 8;24(17):1945-57. doi: 10.1016/j.cub.2014.07.042. Epub 2014 Aug 28.

27.

Proteomics analysis of heterogeneous flagella in brown algae (stramenopiles).

Fu G, Nagasato C, Oka S, Cock JM, Motomura T.

Protist. 2014 Sep;165(5):662-75. doi: 10.1016/j.protis.2014.07.007. Epub 2014 Jul 29.

28.

Evolution and regulation of complex life cycles: a brown algal perspective.

Cock JM, Godfroy O, Macaisne N, Peters AF, Coelho SM.

Curr Opin Plant Biol. 2014 Feb;17:1-6. doi: 10.1016/j.pbi.2013.09.004. Epub 2013 Oct 26. Review.

PMID:
24507487
29.

Gene silencing in Fucus embryos: developmental consequences of RNAi-mediated cytoskeletal disruption.

Farnham G, Strittmatter M, Coelho S, Cock JM, Brownlee C.

J Phycol. 2013 Oct;49(5):819-29. doi: 10.1111/jpy.12096. Epub 2013 Aug 7.

PMID:
27007308
30.

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):5247-52. doi: 10.1073/pnas.1221259110. Epub 2013 Mar 15.

31.

Ecological and evolutionary genomics of marine photosynthetic organisms.

Coelho SM, Simon N, Ahmed S, Cock JM, Partensky F.

Mol Ecol. 2013 Feb;22(3):867-907. doi: 10.1111/mec.12000. Epub 2012 Sep 18. Review.

PMID:
22989289
32.

Immunostaining of Ectocarpus cells.

Coelho SM, Scornet D, Rousvoal S, Peters N, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Mar 1;2012(3):369-72. doi: 10.1101/pdb.prot067975.

PMID:
22383639
33.

Extraction of high-quality genomic DNA from Ectocarpus.

Coelho SM, Scornet D, Rousvoal S, Peters N, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Mar 1;2012(3):365-8. doi: 10.1101/pdb.prot067967.

PMID:
22383638
34.

Isolation and regeneration of protoplasts from Ectocarpus.

Coelho SM, Scornet D, Rousvoal S, Peters N, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Mar 1;2012(3):361-4. doi: 10.1101/pdb.prot067959.

PMID:
22383637
35.

Genetic crosses between Ectocarpus strains.

Coelho SM, Scornet D, Rousvoal S, Peters N, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Feb 1;2012(2):262-5. doi: 10.1101/pdb.prot067942.

PMID:
22301663
36.

How to cultivate Ectocarpus.

Coelho SM, Scornet D, Rousvoal S, Peters NT, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Feb 1;2012(2):258-61. doi: 10.1101/pdb.prot067934.

PMID:
22301662
37.

Ectocarpus: a model organism for the brown algae.

Coelho SM, Scornet D, Rousvoal S, Peters NT, Dartevelle L, Peters AF, Cock JM.

Cold Spring Harb Protoc. 2012 Feb 1;2012(2):193-8. doi: 10.1101/pdb.emo065821.

PMID:
22301644
38.

Genetic regulation of life cycle transitions in the brown alga Ectocarpus.

Coelho SM, Godfroy O, Arun A, Le Corguillé G, Peters AF, Cock JM.

Plant Signal Behav. 2011 Nov;6(11):1858-60. doi: 10.4161/psb.6.11.17737. Epub 2011 Nov 1.

39.

Brown algae.

Cock JM, Peters AF, Coelho SM.

Curr Biol. 2011 Aug 9;21(15):R573-5. doi: 10.1016/j.cub.2011.05.006. No abstract available.

40.

OUROBOROS is a master regulator of the gametophyte to sporophyte life cycle transition in the brown alga Ectocarpus.

Coelho SM, Godfroy O, Arun A, Le Corguillé G, Peters AF, Cock JM.

Proc Natl Acad Sci U S A. 2011 Jul 12;108(28):11518-23. doi: 10.1073/pnas.1102274108. Epub 2011 Jun 27.

41.

In silico survey of the mitochondrial protein uptake and maturation systems in the brown alga Ectocarpus siliculosus.

Delage L, Leblanc C, Nyvall Collén P, Gschloessl B, Oudot MP, Sterck L, Poulain J, Aury JM, Cock JM.

PLoS One. 2011;6(5):e19540. doi: 10.1371/journal.pone.0019540. Epub 2011 May 18.

42.

Algal models in plant biology.

Cock JM, Coelho SM.

J Exp Bot. 2011 May;62(8):2425-30. doi: 10.1093/jxb/err117. No abstract available.

PMID:
21576398
43.

Characterization of GDP-mannose dehydrogenase from the brown alga Ectocarpus siliculosus providing the precursor for the alginate polymer.

Tenhaken R, Voglas E, Cock JM, Neu V, Huber CG.

J Biol Chem. 2011 May 13;286(19):16707-15. doi: 10.1074/jbc.M111.230979. Epub 2011 Mar 24.

44.

Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae).

Dittami SM, Proux C, Rousvoal S, Peters AF, Cock JM, Coppée JY, Boyen C, Tonon T.

BMC Mol Biol. 2011 Jan 13;12:2. doi: 10.1186/1471-2199-12-2.

45.

Cell cycles and endocycles in the model brown seaweed, Ectocarpus siliculosus.

Bothwell JH, Marie D, Peters AF, Cock JM, Coelho SM.

Plant Signal Behav. 2010 Nov;5(11):1473-5. Epub 2010 Nov 1.

46.

The Ectocarpus genome sequence: insights into brown algal biology and the evolutionary diversity of the eukaryotes.

Cock JM, Coelho SM, Brownlee C, Taylor AR.

New Phytol. 2010 Oct;188(1):1-4. doi: 10.1111/j.1469-8137.2010.03454.x. No abstract available.

47.

Role of endoreduplication and apomeiosis during parthenogenetic reproduction in the model brown alga Ectocarpus.

Bothwell JH, Marie D, Peters AF, Cock JM, Coelho SM.

New Phytol. 2010 Oct;188(1):111-21. doi: 10.1111/j.1469-8137.2010.03357.x. Epub 2010 Jul 2.

48.

Central and storage carbon metabolism of the brown alga Ectocarpus siliculosus: insights into the origin and evolution of storage carbohydrates in Eukaryotes.

Michel G, Tonon T, Scornet D, Cock JM, Kloareg B.

New Phytol. 2010 Oct;188(1):67-81. doi: 10.1111/j.1469-8137.2010.03345.x. Epub 2010 Jul 2.

49.

The cell wall polysaccharide metabolism of the brown alga Ectocarpus siliculosus. Insights into the evolution of extracellular matrix polysaccharides in Eukaryotes.

Michel G, Tonon T, Scornet D, Cock JM, Kloareg B.

New Phytol. 2010 Oct;188(1):82-97. doi: 10.1111/j.1469-8137.2010.03374.x. Epub 2010 Jul 2.

50.

Genetic diversity of Ectocarpus (Ectocarpales, Phaeophyceae) in Peru and northern Chile, the area of origin of the genome-sequenced strain.

Peters AF, Mann AD, Córdova CA, Brodie J, Correa JA, Schroeder DC, Cock JM.

New Phytol. 2010 Oct;188(1):30-41. doi: 10.1111/j.1469-8137.2010.03303.x. Epub 2010 Jun 1.

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