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Items: 1 to 50 of 106

1.

Correction to "Comprehensive Analysis of Changes in Crude Oil Chemical Composition during Biosouring and Treatments".

Nowak JA, Shrestha PM, Weber RJ, McKenna AM, Chen H, Coates JD, Goldstein AH.

Environ Sci Technol. 2019 Jun 15. doi: 10.1021/acs.est.9b03043. [Epub ahead of print] No abstract available.

PMID:
31203615
2.

Resistance and Resilience of Sulfidogenic Communities in the Face of the Specific Inhibitor Perchlorate.

Stoeva MK, Nalula G, Garcia N, Cheng Y, Engelbrektson AL, Carlson HK, Coates JD.

Front Microbiol. 2019 Apr 2;10:654. doi: 10.3389/fmicb.2019.00654. eCollection 2019.

3.

Adaptation of Desulfovibrio alaskensis G20 to perchlorate, a specific inhibitor of sulfate reduction.

Mehta-Kolte MG, Stoeva MK, Mehra A, Redford SA, Youngblut MD, Zane G, Grégoire P, Carlson HK, Wall J, Coates JD.

Environ Microbiol. 2019 Apr;21(4):1395-1406. doi: 10.1111/1462-2920.14570. Epub 2019 Mar 19.

PMID:
30807684
4.

Specific inhibitors of respiratory sulfate reduction: towards a mechanistic understanding.

Stoeva MK, Coates JD.

Microbiology. 2019 Mar;165(3):254-269. doi: 10.1099/mic.0.000750. Epub 2018 Dec 17.

PMID:
30556806
5.

Mitigating Sulfidogenesis With Simultaneous Perchlorate and Nitrate Treatments.

Engelbrektson A, Briseno V, Liu Y, Figueroa I, Yee M, Shao GL, Carlson H, Coates JD.

Front Microbiol. 2018 Oct 4;9:2305. doi: 10.3389/fmicb.2018.02305. eCollection 2018.

6.

Attenuating Sulfidogenesis in a Soured Continuous Flow Column System With Perchlorate Treatment.

Engelbrektson AL, Cheng Y, Hubbard CG, Jin YT, Arora B, Tom LM, Hu P, Grauel AL, Conrad ME, Andersen GL, Ajo-Franklin JB, Coates JD.

Front Microbiol. 2018 Jul 26;9:1575. doi: 10.3389/fmicb.2018.01575. eCollection 2018.

7.

Dissimilatory Sulfate Reduction Under High Pressure by Desulfovibrio alaskensis G20.

Williamson AJ, Carlson HK, Kuehl JV, Huang LL, Iavarone AT, Deutschbauer A, Coates JD.

Front Microbiol. 2018 Jul 9;9:1465. doi: 10.3389/fmicb.2018.01465. eCollection 2018.

8.

Functional Redundancy in Perchlorate and Nitrate Electron Transport Chains and Rewiring Respiratory Pathways to Alter Terminal Electron Acceptor Preference.

Wang O, Melnyk RA, Mehta-Kolte MG, Youngblut MD, Carlson HK, Coates JD.

Front Microbiol. 2018 Mar 6;9:376. doi: 10.3389/fmicb.2018.00376. eCollection 2018.

9.

Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.

Barnum TP, Figueroa IA, Carlström CI, Lucas LN, Engelbrektson AL, Coates JD.

ISME J. 2018 Jun;12(6):1568-1581. doi: 10.1038/s41396-018-0081-5. Epub 2018 Feb 23.

10.

Comprehensive Analysis of Changes in Crude Oil Chemical Composition during Biosouring and Treatments.

Nowak JA, Shrestha PM, Weber RJ, McKenna AM, Chen H, Coates JD, Goldstein AH.

Environ Sci Technol. 2018 Feb 6;52(3):1290-1300. doi: 10.1021/acs.est.7b05346. Epub 2018 Jan 22. Erratum in: Environ Sci Technol. 2019 Jun 15;:.

PMID:
29320174
11.

Biotechnological Applications of Microbial (Per)chlorate Reduction.

Wang O, Coates JD.

Microorganisms. 2017 Nov 24;5(4). pii: E76. doi: 10.3390/microorganisms5040076. Review.

12.

Metagenomics-guided analysis of microbial chemolithoautotrophic phosphite oxidation yields evidence of a seventh natural CO2 fixation pathway.

Figueroa IA, Barnum TP, Somasekhar PY, Carlström CI, Engelbrektson AL, Coates JD.

Proc Natl Acad Sci U S A. 2018 Jan 2;115(1):E92-E101. doi: 10.1073/pnas.1715549114. Epub 2017 Nov 28.

13.

High-Throughput Screening To Identify Potent and Specific Inhibitors of Microbial Sulfate Reduction.

Carlson HK, Mullan MR, Mosqueda LA, Chen S, Arkin MR, Coates JD.

Environ Sci Technol. 2017 Jun 20;51(12):7278-7285. doi: 10.1021/acs.est.7b00686. Epub 2017 May 26.

PMID:
28492331
14.

Mechanism of H2S Oxidation by the Dissimilatory Perchlorate-Reducing Microorganism Azospira suillum PS.

Mehta-Kolte MG, Loutey D, Wang O, Youngblut MD, Hubbard CG, Wetmore KM, Conrad ME, Coates JD.

MBio. 2017 Feb 21;8(1). pii: e02023-16. doi: 10.1128/mBio.02023-16.

15.

Microbial Phosphite Oxidation and Its Potential Role in the Global Phosphorus and Carbon Cycles.

Figueroa IA, Coates JD.

Adv Appl Microbiol. 2017;98:93-117. doi: 10.1016/bs.aambs.2016.09.004. Epub 2016 Nov 1. Review.

PMID:
28189156
16.

Gastrointestinal stromal tumour of the stomach in an 8-year-old boy.

Coates JD.

Ultrasound. 2016 Nov;24(4):233-236. Epub 2016 Sep 1.

17.

Characterization of an anaerobic marine microbial community exposed to combined fluxes of perchlorate and salinity.

Carlström CI, Lucas LN, Rohde RA, Haratian A, Engelbrektson AL, Coates JD.

Appl Microbiol Biotechnol. 2016 Nov;100(22):9719-9732. Epub 2016 Sep 5.

PMID:
27596621
18.

(Per)chlorate in Biology on Earth and Beyond.

Youngblut MD, Wang O, Barnum TP, Coates JD.

Annu Rev Microbiol. 2016 Sep 8;70:435-57. doi: 10.1146/annurev-micro-102215-095406. Epub 2016 Jul 25. Review.

PMID:
27482739
19.

Reactive Transport Model of Sulfur Cycling as Impacted by Perchlorate and Nitrate Treatments.

Cheng Y, Hubbard CG, Li L, Bouskill N, Molins S, Zheng L, Sonnenthal E, Conrad ME, Engelbrektson A, Coates JD, Ajo-Franklin JB.

Environ Sci Technol. 2016 Jul 5;50(13):7010-8. doi: 10.1021/acs.est.6b00081. Epub 2016 Jun 22.

PMID:
27267666
20.

Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues.

Youngblut MD, Tsai CL, Clark IC, Carlson HK, Maglaqui AP, Gau-Pan PS, Redford SA, Wong A, Tainer JA, Coates JD.

J Biol Chem. 2016 Apr 22;291(17):9190-202. doi: 10.1074/jbc.M116.714618. Epub 2016 Mar 3.

21.

The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer.

Melnyk RA, Coates JD.

BMC Genomics. 2015 Oct 26;16:862. doi: 10.1186/s12864-015-2011-5.

22.

Genetic dissection of chlorate respiration in Pseudomonas stutzeri PDA reveals syntrophic (per)chlorate reduction.

Clark IC, Youngblut M, Jacobsen G, Wetmore KM, Deutschbauer A, Lucas L, Coates JD.

Environ Microbiol. 2016 Oct;18(10):3342-3354. doi: 10.1111/1462-2920.13068. Epub 2015 Dec 10.

PMID:
26411776
23.

Synthetic and Evolutionary Construction of a Chlorate-Reducing Shewanella oneidensis MR-1.

Clark IC, Melnyk RA, Youngblut MD, Carlson HK, Iavarone AT, Coates JD.

MBio. 2015 May 19;6(3):e00282-15. doi: 10.1128/mBio.00282-15.

24.

Novel mechanism for scavenging of hypochlorite involving a periplasmic methionine-rich Peptide and methionine sulfoxide reductase.

Melnyk RA, Youngblut MD, Clark IC, Carlson HK, Wetmore KM, Price MN, Iavarone AT, Deutschbauer AM, Arkin AP, Coates JD.

MBio. 2015 May 12;6(3):e00233-15. doi: 10.1128/mBio.00233-15.

25.

(Per)chlorate-reducing bacteria can utilize aerobic and anaerobic pathways of aromatic degradation with (per)chlorate as an electron acceptor.

Carlström CI, Loutey D, Bauer S, Clark IC, Rohde RA, Iavarone AT, Lucas L, Coates JD.

MBio. 2015 Mar 24;6(2). pii: e02287-14. doi: 10.1128/mBio.02287-14.

26.

Heterologous expression and purification of a multiheme cytochrome from a Gram-positive bacterium capable of performing extracellular respiration.

Costa NL, Carlson HK, Coates JD, Louro RO, Paquete CM.

Protein Expr Purif. 2015 Jul;111:48-52. doi: 10.1016/j.pep.2015.03.007. Epub 2015 Mar 19.

PMID:
25797208
27.

Control of sulfidogenesis through bio-oxidation of H2S coupled to (per)chlorate reduction.

Gregoire P, Engelbrektson A, Hubbard CG, Metlagel Z, Csencsits R, Auer M, Conrad ME, Thieme J, Northrup P, Coates JD.

Environ Microbiol Rep. 2014 Dec;6(6):558-64.

PMID:
25756108
28.

Monofluorophosphate is a selective inhibitor of respiratory sulfate-reducing microorganisms.

Carlson HK, Stoeva MK, Justice NB, Sczesnak A, Mullan MR, Mosqueda LA, Kuehl JV, Deutschbauer AM, Arkin AP, Coates JD.

Environ Sci Technol. 2015 Mar 17;49(6):3727-36. doi: 10.1021/es505843z. Epub 2015 Mar 4.

PMID:
25698072
29.

Phenotypic and genotypic description of Sedimenticola selenatireducens strain CUZ, a marine (per)chlorate-respiring gammaproteobacterium, and its close relative the chlorate-respiring Sedimenticola strain NSS.

Carlström CI, Loutey DE, Wang O, Engelbrektson A, Clark I, Lucas LN, Somasekhar PY, Coates JD.

Appl Environ Microbiol. 2015 Apr;81(8):2717-26. doi: 10.1128/AEM.03606-14. Epub 2015 Feb 6.

30.

Mechanisms of direct inhibition of the respiratory sulfate-reduction pathway by (per)chlorate and nitrate.

Carlson HK, Kuehl JV, Hazra AB, Justice NB, Stoeva MK, Sczesnak A, Mullan MR, Iavarone AT, Engelbrektson A, Price MN, Deutschbauer AM, Arkin AP, Coates JD.

ISME J. 2015 Jun;9(6):1295-305. doi: 10.1038/ismej.2014.216. Epub 2014 Nov 18.

31.

Isotopic insights into microbial sulfur cycling in oil reservoirs.

Hubbard CG, Cheng Y, Engelbrekston A, Druhan JL, Li L, Ajo-Franklin JB, Coates JD, Conrad ME.

Front Microbiol. 2014 Sep 19;5:480. doi: 10.3389/fmicb.2014.00480. eCollection 2014.

32.

Chlorate reduction in Shewanella algae ACDC is a recently acquired metabolism characterized by gene loss, suboptimal regulation and oxidative stress.

Clark IC, Melnyk RA, Iavarone AT, Novichkov PS, Coates JD.

Mol Microbiol. 2014 Oct;94(1):107-25. doi: 10.1111/mmi.12746. Epub 2014 Sep 5.

33.

Inhibition of microbial sulfate reduction in a flow-through column system by (per)chlorate treatment.

Engelbrektson A, Hubbard CG, Tom LM, Boussina A, Jin YT, Wong H, Piceno YM, Carlson HK, Conrad ME, Anderson G, Coates JD.

Front Microbiol. 2014 Jun 26;5:315. doi: 10.3389/fmicb.2014.00315. eCollection 2014.

34.

Methane oxidation linked to chlorite dismutation.

Miller LG, Baesman SM, Carlström CI, Coates JD, Oremland RS.

Front Microbiol. 2014 Jun 17;5:275. doi: 10.3389/fmicb.2014.00275. eCollection 2014.

35.

Transposon and deletion mutagenesis of genes involved in perchlorate reduction in Azospira suillum PS.

Melnyk RA, Clark IC, Liao A, Coates JD.

MBio. 2013 Dec 31;5(1):e00769-13. doi: 10.1128/mBio.00769-13.

36.

Structure and evolution of chlorate reduction composite transposons.

Clark IC, Melnyk RA, Engelbrektson A, Coates JD.

MBio. 2013 Aug 6;4(4). pii: e00379-13. doi: 10.1128/mBio.00379-13.

37.

Applicability of anaerobic nitrate-dependent Fe(II) oxidation to microbial enhanced oil recovery (MEOR).

Zhu H, Carlson HK, Coates JD.

Environ Sci Technol. 2013 Aug 6;47(15):8970-7. doi: 10.1021/es401838b. Epub 2013 Jul 22.

PMID:
23799785
38.

Physiological and genetic description of dissimilatory perchlorate reduction by the novel marine bacterium Arcobacter sp. strain CAB.

Carlström CI, Wang O, Melnyk RA, Bauer S, Lee J, Engelbrektson A, Coates JD.

MBio. 2013 May 21;4(3):e00217-13. doi: 10.1128/mBio.00217-13.

39.

Fe(II) oxidation is an innate capability of nitrate-reducing bacteria that involves abiotic and biotic reactions.

Carlson HK, Clark IC, Blazewicz SJ, Iavarone AT, Coates JD.

J Bacteriol. 2013 Jul;195(14):3260-8. doi: 10.1128/JB.00058-13. Epub 2013 May 17.

40.

Natural organic matter as global antennae for primary production.

Van Trump JI, Rivera Vega FJ, Coates JD.

Astrobiology. 2013 May;13(5):476-82. doi: 10.1089/ast.2012.0913.

41.

Surfaceomics and surface-enhanced Raman spectroscopy of environmental microbes: matching cofactors with redox-active surface proteins.

Carlson HK, Iavarone AT, Coates JD.

Proteomics. 2013 Oct;13(18-19):2761-5. doi: 10.1002/pmic.201300010. Epub 2013 Jun 18.

PMID:
23616463
42.

Complete genome sequence of the anaerobic perchlorate-reducing bacterium Azospira suillum strain PS.

Byrne-Bailey KG, Coates JD.

J Bacteriol. 2012 May;194(10):2767-8. doi: 10.1128/JB.00124-12.

43.

Draft genome sequence of the anaerobic, nitrate-dependent, Fe(II)-oxidizing bacterium Pseudogulbenkiania ferrooxidans strain 2002.

Byrne-Bailey KG, Weber KA, Coates JD.

J Bacteriol. 2012 May;194(9):2400-1. doi: 10.1128/JB.00214-12.

44.

Toward a mechanistic understanding of anaerobic nitrate-dependent iron oxidation: balancing electron uptake and detoxification.

Carlson HK, Clark IC, Melnyk RA, Coates JD.

Front Microbiol. 2012 Feb 20;3:57. doi: 10.3389/fmicb.2012.00057. eCollection 2012.

45.

Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria.

Carlson HK, Iavarone AT, Gorur A, Yeo BS, Tran R, Melnyk RA, Mathies RA, Auer M, Coates JD.

Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1702-7. doi: 10.1073/pnas.1112905109. Epub 2012 Jan 17.

46.

Evidence for direct electron transfer by a gram-positive bacterium isolated from a microbial fuel cell.

Wrighton KC, Thrash JC, Melnyk RA, Bigi JP, Byrne-Bailey KG, Remis JP, Schichnes D, Auer M, Chang CJ, Coates JD.

Appl Environ Microbiol. 2011 Nov;77(21):7633-9. doi: 10.1128/AEM.05365-11. Epub 2011 Sep 9.

47.

Identification of a perchlorate reduction genomic island with novel regulatory and metabolic genes.

Melnyk RA, Engelbrektson A, Clark IC, Carlson HK, Byrne-Bailey K, Coates JD.

Appl Environ Microbiol. 2011 Oct;77(20):7401-4. doi: 10.1128/AEM.05758-11. Epub 2011 Aug 19.

48.

Humic acid-oxidizing, nitrate-reducing bacteria in agricultural soils.

Van Trump JI, Wrighton KC, Thrash JC, Weber KA, Andersen GL, Coates JD.

MBio. 2011 Jul 12;2(4):e00044-11. doi: 10.1128/mBio.00044-11. Print 2011.

49.

Environmental and taxonomic bacterial diversity of anaerobic uranium(IV) bio-oxidation.

Weber KA, Thrash JC, Van Trump JI, Achenbach LA, Coates JD.

Appl Environ Microbiol. 2011 Jul;77(13):4693-6. doi: 10.1128/AEM.02539-10. Epub 2011 May 13.

50.

A bioassay for the detection of perchlorate in the ppb range.

Heinnickel M, Smith SC, Koo J, O'Connor SM, Coates JD.

Environ Sci Technol. 2011 Apr 1;45(7):2958-64. doi: 10.1021/es103715f. Epub 2011 Mar 8.

PMID:
21384912

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