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Items: 1 to 50 of 81

1.

Achromobacter veterisilvae sp. nov., from a mixed hydrogen-oxidizing bacteria enrichment reactor for microbial protein production.

Dumolin C, Peeters C, Ehsani E, Tahon G, De Canck E, Cnockaert M, Boon N, Vandamme P.

Int J Syst Evol Microbiol. 2019 Oct 15. doi: 10.1099/ijsem.0.003786. [Epub ahead of print]

PMID:
31613739
2.

Introducing SPeDE: High-Throughput Dereplication and Accurate Determination of Microbial Diversity from Matrix-Assisted Laser Desorption-Ionization Time of Flight Mass Spectrometry Data.

Dumolin C, Aerts M, Verheyde B, Schellaert S, Vandamme T, Van der Jeugt F, De Canck E, Cnockaert M, Wieme AD, Cleenwerck I, Peiren J, Dawyndt P, Vandamme P, Carlier A.

mSystems. 2019 Sep 10;4(5). pii: e00437-19. doi: 10.1128/mSystems.00437-19.

3.

Tracking the sources of psychrotrophic bacteria contaminating chicken cuts during processing.

Samapundo S, de Baenst I, Aerts M, Cnockaert M, Devlieghere F, Van Damme P.

Food Microbiol. 2019 Aug;81:40-50. doi: 10.1016/j.fm.2018.06.003. Epub 2018 Jun 9.

PMID:
30910087
4.

Determination of the microbiological contamination in minced pork by culture dependent and 16S amplicon sequencing analysis.

Peruzy MF, Murru N, Yu Z, Cnockaert M, Joossens M, Proroga YTR, Houf K.

Int J Food Microbiol. 2019 Feb 2;290:27-35. doi: 10.1016/j.ijfoodmicro.2018.09.025. Epub 2018 Oct 2.

PMID:
30292676
5.

Lactococci dominate the bacterial communities of fermented maize, sorghum and millet slurries in Zimbabwe.

Gabaza M, Joossens M, Cnockaert M, Muchuweti M, Raes K, Vandamme P.

Int J Food Microbiol. 2019 Jan 16;289:77-87. doi: 10.1016/j.ijfoodmicro.2018.09.001. Epub 2018 Sep 3.

PMID:
30216819
6.

Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.

De Meyer SE, Cnockaert M, Moulin L, Howieson JG, Vandamme P.

Int J Syst Evol Microbiol. 2018 Aug;68(8):2607-2614. doi: 10.1099/ijsem.0.002884. Epub 2018 Jun 29.

PMID:
29957169
7.

Antimicrobial activity against Mycobacterium tuberculosis under in vitro lipid-rich dormancy conditions.

Aguilar-Ayala DA, Cnockaert M, Vandamme P, Palomino JC, Martin A, Gonzalez-Y-Merchand J.

J Med Microbiol. 2018 Mar;67(3):282-285. doi: 10.1099/jmm.0.000681. Epub 2018 Jan 15.

PMID:
29458544
8.

Halomonas nigrificans sp. nov., isolated from cheese.

Oguntoyinbo FA, Cnockaert M, Cho GS, Kabisch J, Neve H, Bockelmann W, Wenning M, Franz CMAP, Vandamme P.

Int J Syst Evol Microbiol. 2018 Jan;68(1):371-376. doi: 10.1099/ijsem.0.002515. Epub 2017 Dec 12.

PMID:
29231158
9.

In vitro activity of bedaquiline against rapidly growing nontuberculous mycobacteria.

Aguilar-Ayala DA, Cnockaert M, André E, Andries K, Gonzalez-Y-Merchand JA, Vandamme P, Palomino JC, Martin A.

J Med Microbiol. 2017 Aug;66(8):1140-1143. doi: 10.1099/jmm.0.000537. Epub 2017 Jul 28.

10.

Characterization of Mycobacterium chelonae-Like Strains by Comparative Genomics.

Nogueira CL, de Almeida LGP, Menendez MC, Garcia MJ, Digiampietri LA, Chimara E, Cnockaert M, Palomino JC, Portaels F, Martin A, Vandamme P, Leão SC.

Front Microbiol. 2017 May 8;8:789. doi: 10.3389/fmicb.2017.00789. eCollection 2017.

11.

Gilliamella intestini sp. nov., Gilliamella bombicola sp. nov., Gilliamella bombi sp. nov. and Gilliamella mensalis sp. nov.: Four novel Gilliamella species isolated from the bumblebee gut.

Praet J, Cnockaert M, Meeus I, Smagghe G, Vandamme P.

Syst Appl Microbiol. 2017 Jun;40(4):199-204. doi: 10.1016/j.syapm.2017.03.003. Epub 2017 Apr 12.

PMID:
28442157
12.

Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment.

Švec P, Králová S, Busse HJ, Kleinhagauer T, Pantůček R, Mašlaňová I, Cnockaert M, Vandamme P, Staňková E, Gelbíčová T, Holochová P, Barták M, Kýrová K, Sedláček I.

Int J Syst Evol Microbiol. 2017 May;67(5):1499-1507. doi: 10.1099/ijsem.0.001749. Epub 2017 May 22.

PMID:
27995868
13.

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis.

Carlier A, Cnockaert M, Fehr L, Vandamme P, Eberl L.

Syst Appl Microbiol. 2017 Jan;40(1):11-21. doi: 10.1016/j.syapm.2016.10.002. Epub 2016 Nov 24.

PMID:
27913074
14.

Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil.

Bournaud C, Moulin L, Cnockaert M, Faria S, Prin Y, Severac D, Vandamme P.

Int J Syst Evol Microbiol. 2017 Feb;67(2):432-440. doi: 10.1099/ijsem.0.001648. Epub 2017 Mar 16.

PMID:
27902255
15.

Detection, isolation and characterization of Fusobacterium gastrosuis sp. nov. colonizing the stomach of pigs.

De Witte C, Flahou B, Ducatelle R, Smet A, De Bruyne E, Cnockaert M, Taminiau B, Daube G, Vandamme P, Haesebrouck F.

Syst Appl Microbiol. 2017 Jan;40(1):42-50. doi: 10.1016/j.syapm.2016.10.001. Epub 2016 Oct 24.

16.

Combined approach to the identification of clinically infrequent non-tuberculous mycobacteria in Argentina.

Monteserin J, Paul R, Lopez B, Cnockaert M, Tortoli E, Menéndez C, García MJ, Palomino JC, Vandamme P, Ritacco V, Martin A.

Int J Tuberc Lung Dis. 2016 Sep;20(9):1257-62. doi: 10.5588/ijtld.16.0122.

PMID:
27510255
17.

Proposal of Helicobacter canicola sp. nov., previously identified as Helicobacter cinaedi, isolated from canines.

Kawamura Y, Tomida J, Miyoshi-Akiyama T, Okamoto T, Narita M, Hashimoto K, Cnockaert M, Vandamme P, Morita Y, Sawa T, Akaike T.

Syst Appl Microbiol. 2016 Jul;39(5):307-12. doi: 10.1016/j.syapm.2016.06.004. Epub 2016 Jun 25.

PMID:
27381809
18.

Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov.

Vandamme PA, Peeters C, Inganäs E, Cnockaert M, Houf K, Spilker T, Moore ER, LiPuma JJ.

Int J Syst Evol Microbiol. 2016 Sep;66(9):3708-3717. doi: 10.1099/ijsem.0.001254. Epub 2016 Jun 30.

PMID:
27373279
19.

Helicobacter apri sp. nov., isolated from wild boars.

Zanoni RG, Piva S, Florio D, Bassi P, Mion D, Cnockaert M, Luchetti A, Vandamme P.

Int J Syst Evol Microbiol. 2016 Aug;66(8):2876-82. doi: 10.1099/ijsem.0.001071. Epub 2016 Apr 11.

PMID:
27064324
20.

Corynebacterium lowii sp. nov. and Corynebacterium oculi sp. nov., derived from human clinical disease and an emended description of Corynebacterium mastitidis.

Bernard KA, Pacheco AL, Loomer C, Burdz T, Wiebe D, Huynh C, Kaplen B, Olson AB, Cnockaert M, Eguchi H, Kuwahara T, Nakayama-Imaohji H, Shiota H, Boudewijns M, Van Hoecke F, Vandamme P.

Int J Syst Evol Microbiol. 2016 Aug;66(8):2803-12. doi: 10.1099/ijsem.0.001059. Epub 2016 Apr 5.

PMID:
27045762
21.

Bifidobacterium aquikefiri sp. nov., isolated from water kefir.

Laureys D, Cnockaert M, De Vuyst L, Vandamme P.

Int J Syst Evol Microbiol. 2016 Mar;66(3):1281-1286. doi: 10.1099/ijsem.0.000877. Epub 2016 Jan 5.

PMID:
26739269
22.

Reclassification of Achromobacter spiritinus Vandamme et al. 2013 as a later heterotypic synonym of Achromobacter marplatensis Gomila et al. 2011.

Vandamme PA, Peeters C, Cnockaert M, Gomila M, Moore ER, Spilker T, LiPuma JJ.

Int J Syst Evol Microbiol. 2016 Apr;66(4):1641-4. doi: 10.1099/ijsem.0.000872. Epub 2016 Jan 5.

PMID:
26738485
23.

Classification of strain CCM 4446T as Rhodococcus degradans sp. nov.

Švec P, Černohlávková J, Busse HJ, Vojtková H, Pantůček R, Cnockaert M, Mašlaňová I, Králová S, Vandamme P, Sedláček I.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4381-7. doi: 10.1099/ijsem.0.000584. Epub 2015 Sep 18.

PMID:
26385412
24.

Mycobacterium saopaulense sp. nov., a rapidly growing mycobacterium closely related to members of the Mycobacterium chelonae--Mycobacterium abscessus group.

Nogueira CL, Whipps CM, Matsumoto CK, Chimara E, Droz S, Tortoli E, de Freitas D, Cnockaert M, Palomino JC, Martin A, Vandamme P, Leão SC.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4403-9.

25.

Enterococcus bulliens sp. nov., a novel lactic acid bacterium isolated from camel milk.

Kadri Z, Spitaels F, Cnockaert M, Praet J, El Farricha O, Swings J, Vandamme P.

Antonie Van Leeuwenhoek. 2015 Nov;108(5):1257-65. doi: 10.1007/s10482-015-0579-z. Epub 2015 Sep 7.

PMID:
26346480
26.

Bordetella bronchialis sp. nov., Bordetella flabilis sp. nov. and Bordetella sputigena sp. nov., isolated from human respiratory specimens, and reclassification of Achromobacter sediminum Zhang et al. 2014 as Verticia sediminum gen. nov., comb. nov.

Vandamme PA, Peeters C, Cnockaert M, Inganäs E, Falsen E, Moore ER, Nunes OC, Manaia CM, Spilker T, LiPuma JJ.

Int J Syst Evol Microbiol. 2015 Oct;65(10):3674-82. doi: 10.1099/ijsem.0.000473.

PMID:
26220296
27.

Mycobacterium franklinii sp. nov., a species closely related to members of the Mycobacterium chelonae-Mycobacterium abscessus group.

Lourenço Nogueira C, Simmon KE, Chimara E, Cnockaert M, Carlos Palomino J, Martin A, Vandamme P, Brown-Elliott BA, Wallace R Jr, Cardoso Leão S.

Int J Syst Evol Microbiol. 2015 Jul;65(7):2148-53. doi: 10.1099/ijs.0.000234. Epub 2015 Apr 9.

PMID:
25858242
28.

Staphylococcus petrasii subsp. pragensis subsp. nov., occurring in human clinical material.

Švec P, De Bel A, Sedláček I, Petráš P, Gelbíčová T, Černohlávková J, Mašlanˇová I, Cnockaert M, Varbanovová I, Echahidi F, Vandamme P, Pantuček R.

Int J Syst Evol Microbiol. 2015 Jul;65(7):2071-7. doi: 10.1099/ijs.0.000220. Epub 2015 Mar 31.

PMID:
25829332
29.

Antimicrobial susceptibility of rapidly growing mycobacteria using the rapid colorimetric method.

Ramis IB, Cnockaert M, von Groll A, Nogueira CL, Leão SC, Andre E, Simon A, Palomino JC, da Silva PE, Vandamme P, Martin A.

Eur J Clin Microbiol Infect Dis. 2015 Jul;34(7):1403-13. doi: 10.1007/s10096-015-2365-2. Epub 2015 Mar 29.

PMID:
25820290
30.

Novel lactic acid bacteria isolated from the bumble bee gut: Convivina intestini gen. nov., sp. nov., Lactobacillus bombicola sp. nov., and Weissella bombi sp. nov.

Praet J, Meeus I, Cnockaert M, Houf K, Smagghe G, Vandamme P.

Antonie Van Leeuwenhoek. 2015 May;107(5):1337-49. doi: 10.1007/s10482-015-0429-z. Epub 2015 Mar 18.

PMID:
25783976
31.

Bifidobacterium commune sp. nov. isolated from the bumble bee gut.

Praet J, Meeus I, Cnockaert M, Aerts M, Smagghe G, Vandamme P.

Antonie Van Leeuwenhoek. 2015 May;107(5):1307-13. doi: 10.1007/s10482-015-0425-3. Epub 2015 Mar 10.

PMID:
25753540
32.

Evaluation of the Speed-Oligo Mycobacteria assay for the identification of nontuberculous mycobacteria.

Ramis IB, Cnockaert M, Von Groll A, Mathys V, Simon A, Tortoli E, Palomino JC, Almeida da Silva PE, Vandamme P, Andre E, Martin A.

J Med Microbiol. 2015 Mar;64(Pt 3):283-7. doi: 10.1099/jmm.0.000025. Epub 2015 Jan 16.

PMID:
25596120
33.

Streptococcus tangierensis sp. nov. and Streptococcus cameli sp. nov., two novel Streptococcus species isolated from raw camel milk in Morocco.

Kadri Z, Vandamme P, Ouadghiri M, Cnockaert M, Aerts M, Elfahime el M, Farricha OE, Swings J, Amar M.

Antonie Van Leeuwenhoek. 2015 Feb;107(2):503-10. doi: 10.1007/s10482-014-0346-6. Epub 2014 Dec 10.

PMID:
25491120
35.

Vibrio madracius sp. nov. isolated from Madracis decactis (Scleractinia) in St Peter & St Paul Archipelago, Mid-Atlantic Ridge, Brazil.

Moreira AP, Duytschaever G, Tonon LA, Dias GM, Mesquita M, Cnockaert M, Francini-Filho RB, De Vos P, Thompson CC, Thompson FL.

Curr Microbiol. 2014 Oct;69(4):405-11. doi: 10.1007/s00284-014-0600-1. Epub 2014 May 14.

PMID:
24824949
36.

Streptococcus moroccensis sp. nov. and Streptococcus rifensis sp. nov., isolated from raw camel milk.

Kadri Z, Amar M, Ouadghiri M, Cnockaert M, Aerts M, El Farricha O, Vandamme P.

Int J Syst Evol Microbiol. 2014 Jul;64(Pt 7):2480-5. doi: 10.1099/ijs.0.062893-0. Epub 2014 May 1.

PMID:
24786712
37.

Burkholderia cordobensis sp. nov., from agricultural soils.

Draghi WO, Peeters C, Cnockaert M, Snauwaert C, Wall LG, Zorreguieta A, Vandamme P.

Int J Syst Evol Microbiol. 2014 Jun;64(Pt 6):2003-8. doi: 10.1099/ijs.0.059667-0. Epub 2014 Mar 12.

PMID:
24623656
38.

Burkholderia dilworthii sp. nov., isolated from Lebeckia ambigua root nodules.

De Meyer SE, Cnockaert M, Ardley JK, Van Wyk BE, Vandamme PA, Howieson JG.

Int J Syst Evol Microbiol. 2014 Apr;64(Pt 4):1090-5. doi: 10.1099/ijs.0.058602-0. Epub 2013 Dec 24.

PMID:
24368690
39.

Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively.

Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ.

Syst Appl Microbiol. 2013 Oct;36(7):474-82. doi: 10.1016/j.syapm.2013.06.005. Epub 2013 Jul 24.

PMID:
23891345
40.

Burkholderia sprentiae sp. nov., isolated from Lebeckia ambigua root nodules.

De Meyer SE, Cnockaert M, Ardley JK, Maker G, Yates R, Howieson JG, Vandamme P.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):3950-7. doi: 10.1099/ijs.0.048777-0. Epub 2013 May 24.

PMID:
23710047
41.

Burkholderia rhynchosiae sp. nov., isolated from Rhynchosia ferulifolia root nodules.

De Meyer SE, Cnockaert M, Ardley JK, Trengove RD, Garau G, Howieson JG, Vandamme P.

Int J Syst Evol Microbiol. 2013 Nov;63(Pt 11):3944-9. doi: 10.1099/ijs.0.048751-0. Epub 2013 May 24.

PMID:
23710046
42.

A description of the lactic acid bacteria microbiota associated with the production of traditional fermented vegetables in Vietnam.

Nguyen DT, Van Hoorde K, Cnockaert M, De Brandt E, Aerts M, Binh Thanh L, Vandamme P.

Int J Food Microbiol. 2013 Apr 15;163(1):19-27. doi: 10.1016/j.ijfoodmicro.2013.01.024. Epub 2013 Feb 4.

PMID:
23500611
43.

Achromobacter animicus sp. nov., Achromobacter mucicolens sp. nov., Achromobacter pulmonis sp. nov. and Achromobacter spiritinus sp. nov., from human clinical samples.

Vandamme P, Moore ER, Cnockaert M, De Brandt E, Svensson-Stadler L, Houf K, Spilker T, Lipuma JJ.

Syst Appl Microbiol. 2013 Feb;36(1):1-10. doi: 10.1016/j.syapm.2012.10.003. Epub 2012 Dec 6.

PMID:
23219252
44.

Lactobacillus porcinae sp. nov., isolated from traditional Vietnamese nem chua.

Nguyen DT, Cnockaert M, Van Hoorde K, De Brandt E, Snauwaert I, Snauwaert C, De Vuyst L, Le BT, Vandamme P.

Int J Syst Evol Microbiol. 2013 May;63(Pt 5):1754-9. doi: 10.1099/ijs.0.044123-0. Epub 2012 Aug 31.

PMID:
22941299
45.

Validation of MALDI-TOF MS for rapid classification and identification of lactic acid bacteria, with a focus on isolates from traditional fermented foods in Northern Vietnam.

Doan NT, Van Hoorde K, Cnockaert M, De Brandt E, Aerts M, Le Thanh B, Vandamme P.

Lett Appl Microbiol. 2012 Oct;55(4):265-73. doi: 10.1111/j.1472-765X.2012.03287.x. Epub 2012 Aug 3.

46.

Identification and epidemiological relationships of Aeromonas isolates from patients with diarrhea, drinking water and foods.

Pablos M, Huys G, Cnockaert M, Rodríguez-Calleja JM, Otero A, Santos JA, García-López ML.

Int J Food Microbiol. 2011 Jun 30;147(3):203-10. doi: 10.1016/j.ijfoodmicro.2011.04.006. Epub 2011 Apr 21.

PMID:
21550680
47.

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives.

Joossens M, Huys G, Cnockaert M, De Preter V, Verbeke K, Rutgeerts P, Vandamme P, Vermeire S.

Gut. 2011 May;60(5):631-7. doi: 10.1136/gut.2010.223263. Epub 2011 Jan 5.

PMID:
21209126
48.

High-throughput method for comparative analysis of denaturing gradient gel electrophoresis profiles from human fecal samples reveals significant increases in two bifidobacterial species after inulin-type prebiotic intake.

Joossens M, Huys G, Van Steen K, Cnockaert M, Vermeire S, Rutgeerts P, Verbeke K, Vandamme P, De Preter V.

FEMS Microbiol Ecol. 2011 Feb;75(2):343-9. doi: 10.1111/j.1574-6941.2010.01008.x. Epub 2010 Dec 6.

49.

Intra- and interlaboratory performances of two commercial antimicrobial susceptibility testing methods for bifidobacteria and nonenterococcal lactic acid bacteria.

Huys G, D'Haene K, Cnockaert M, Tosi L, Danielsen M, Flórez AB, Mättö J, Axelsson L, Korhonen J, Mayrhofer S, Egervärn M, Giacomini M, Vandamme P.

Antimicrob Agents Chemother. 2010 Jun;54(6):2567-74. doi: 10.1128/AAC.00407-10. Epub 2010 Apr 12.

50.

Hafnia paralvei sp. nov., formerly known as Hafnia alvei hybridization group 2.

Huys G, Cnockaert M, Abbott SL, Janda JM, Vandamme P.

Int J Syst Evol Microbiol. 2010 Aug;60(Pt 8):1725-8. doi: 10.1099/ijs.0.018606-0. Epub 2009 Sep 4.

PMID:
19734282

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