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Items: 45

1.

Semi-Automated Visualization and ANalysis of Trends: A "SAVANT" for Facilitating Antimicrobial Stewardship Using Antistaphylococcal Resistance and Consumption as a Prototype.

Clifford RJ, Chukwuma U, Sparks ME, Richesson D, Neumann CV, Waterman PE, Moran-Gilad J, Julius MD, Hinkle MK, Lesho EP.

Open Forum Infect Dis. 2018 Mar 23;5(4):ofy066. doi: 10.1093/ofid/ofy066. eCollection 2018 Apr.

2.

Whole-Genome Analysis of Bartonella ancashensis, a Novel Pathogen Causing Verruga Peruana, Rural Ancash Region, Peru.

Mullins KE, Hang J, Clifford RJ, Onmus-Leone F, Yang Y, Jiang J, Leguia M, Kasper MR, Maguina C, Lesho EP, Jarman RG, Richards A, Blazes D.

Emerg Infect Dis. 2017 Mar;23(3):430-438. doi: 10.3201/eid2303.161476.

3.

For Rapid Molecular Detection, Why Not a Whole Genome Approach?

Lesho EP, Clifford RJ.

Clin Infect Dis. 2016 Aug 15;63(4):570-1. doi: 10.1093/cid/ciw332. Epub 2016 May 25. No abstract available.

PMID:
27225237
4.

Real time application of whole genome sequencing for outbreak investigation - What is an achievable turnaround time?

McGann P, Bunin JL, Snesrud E, Singh S, Maybank R, Ong AC, Kwak YI, Seronello S, Clifford RJ, Hinkle M, Yamada S, Barnhill J, Lesho E.

Diagn Microbiol Infect Dis. 2016 Jul;85(3):277-282. doi: 10.1016/j.diagmicrobio.2016.04.020. Epub 2016 Apr 30.

5.

Dynamic internalization and recycling of a metal ion transporter: Cu homeostasis and CTR1, the human Cu⁺ uptake system.

Clifford RJ, Maryon EB, Kaplan JH.

J Cell Sci. 2016 Apr 15;129(8):1711-21. doi: 10.1242/jcs.173351. Epub 2016 Mar 4.

6.

Complete Genome Sequence of Bartonella ancashensis Strain 20.00, Isolated from the Blood of a Patient with Verruga Peruana.

Hang J, Mullins KE, Clifford RJ, Onmus-Leone F, Yang Y, Jiang J, Leguia M, Kasper MR, Maguiña C, Lesho EP, Jarman RG, Richards AL, Blazes D.

Genome Announc. 2015 Nov 5;3(6). pii: e01217-15. doi: 10.1128/genomeA.01217-15.

7.

Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma.

Hu N, Wang C, Clifford RJ, Yang HH, Su H, Wang L, Wang Y, Xu Y, Tang ZZ, Ding T, Zhang T, Goldstein AM, Giffen C, Lee MP, Taylor PR.

BMC Genomics. 2015 Sep 26;16(1):732. doi: 10.1186/s12864-015-1919-0.

8.

An 11,000-isolate same plate/same day comparison of the 3 most widely used platforms for analyzing multidrug-resistant clinical pathogens.

Nielsen LE, Clifford RJ, Kwak Y, Preston L, Argyros C, Rabinowitz R, Waterman P, Lesho E.

Diagn Microbiol Infect Dis. 2015 Oct;83(2):93-8. doi: 10.1016/j.diagmicrobio.2015.05.018. Epub 2015 Jun 11.

9.

Fatal outbreak of an emerging clone of extensively drug-resistant Acinetobacter baumannii with enhanced virulence.

Jones CL, Clancy M, Honnold C, Singh S, Snesrud E, Onmus-Leone F, McGann P, Ong AC, Kwak Y, Waterman P, Zurawski DV, Clifford RJ, Lesho E.

Clin Infect Dis. 2015 Jul 15;61(2):145-54. doi: 10.1093/cid/civ225. Epub 2015 Mar 29.

PMID:
25824815
10.

Carbapenem-resistant Enterobacteriaceae and the correlation between carbapenem and fluoroquinolone usage and resistance in the US military health system.

Lesho EP, Clifford RJ, Chukwuma U, Kwak YI, Maneval M, Neumann C, Xie S, Nielsen LE, Julius MD, McGann P, Waterman PE.

Diagn Microbiol Infect Dis. 2015 Feb;81(2):119-25. doi: 10.1016/j.diagmicrobio.2014.09.017. Epub 2014 Sep 28.

PMID:
25497458
11.

An integrated genomic approach identifies persistent tumor suppressive effects of transforming growth factor-β in human breast cancer.

Sato M, Kadota M, Tang B, Yang HH, Yang YA, Shan M, Weng J, Welsh MA, Flanders KC, Nagano Y, Michalowski AM, Clifford RJ, Lee MP, Wakefield LM.

Breast Cancer Res. 2014 Jun 2;16(3):R57. doi: 10.1186/bcr3668.

12.

The antimicrobial resistance monitoring and research (ARMoR) program: the US Department of Defense response to escalating antimicrobial resistance.

Lesho EP, Waterman PE, Chukwuma U, McAuliffe K, Neumann C, Julius MD, Crouch H, Chandrasekera R, English JF, Clifford RJ, Kester KE.

Clin Infect Dis. 2014 Aug 1;59(3):390-7. doi: 10.1093/cid/ciu319. Epub 2014 May 1.

PMID:
24795331
13.

Amplification of aminoglycoside resistance gene aphA1 in Acinetobacter baumannii results in tobramycin therapy failure.

McGann P, Courvalin P, Snesrud E, Clifford RJ, Yoon EJ, Onmus-Leone F, Ong AC, Kwak YI, Grillot-Courvalin C, Lesho E, Waterman PE.

MBio. 2014 Apr 22;5(2):e00915. doi: 10.1128/mBio.00915-14.

14.

Genome-wide transcriptional sequencing identifies novel mutations in metabolic genes in human hepatocellular carcinoma.

Meerzaman DM, Yan C, Chen QR, Edmonson MN, Schaefer CF, Clifford RJ, Dunn BK, Dong L, Finney RP, Cultraro CM, Hu Y, Yang Z, Nguyen CV, Kelley JM, Cai S, Zhang H, Zhang J, Wilson R, Messmer L, Chung YH, Kim JA, Park NH, Lyu MS, Song IH, Komatsoulis G, Buetow KH.

Cancer Genomics Proteomics. 2014 Jan-Feb;11(1):1-12.

PMID:
24633315
15.

Human breast tumor cells are more resistant to cardiac glycoside toxicity than non-tumorigenic breast cells.

Clifford RJ, Kaplan JH.

PLoS One. 2013 Dec 13;8(12):e84306. doi: 10.1371/journal.pone.0084306. eCollection 2013.

16.

Bacterial peritonitis due to Acinetobacter baumannii sequence type 25 with plasmid-borne new delhi metallo-β-lactamase in Honduras.

Waterman PE, McGann P, Snesrud E, Clifford RJ, Kwak YI, Munoz-Urbizo IP, Tabora-Castellanos J, Milillo M, Preston L, Aviles R, Sutter DE, Lesho EP.

Antimicrob Agents Chemother. 2013 Sep;57(9):4584-6. doi: 10.1128/AAC.00275-13. Epub 2013 Jul 1.

17.

Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping.

Onmus-Leone F, Hang J, Clifford RJ, Yang Y, Riley MC, Kuschner RA, Waterman PE, Lesho EP.

PLoS One. 2013 Apr 17;8(4):e61762. doi: 10.1371/journal.pone.0061762. Print 2013.

18.

Detection of New Delhi metallo-β-lactamase (encoded by blaNDM-1) in Acinetobacter schindleri during routine surveillance.

McGann P, Milillo M, Clifford RJ, Snesrud E, Stevenson L, Backlund MG, Viscount HB, Quintero R, Kwak YI, Zapor MJ, Waterman PE, Lesho EP.

J Clin Microbiol. 2013 Jun;51(6):1942-4. doi: 10.1128/JCM.00281-13. Epub 2013 Apr 3.

19.

Novel 16S rRNA methyltransferase RmtH produced by Klebsiella pneumoniae associated with war-related trauma.

O'Hara JA, McGann P, Snesrud EC, Clifford RJ, Waterman PE, Lesho EP, Doi Y.

Antimicrob Agents Chemother. 2013 May;57(5):2413-6. doi: 10.1128/AAC.00266-13. Epub 2013 Mar 11.

20.

MR imaging predictors of molecular profile and survival: multi-institutional study of the TCGA glioblastoma data set.

Gutman DA, Cooper LA, Hwang SN, Holder CA, Gao J, Aurora TD, Dunn WD Jr, Scarpace L, Mikkelsen T, Jain R, Wintermark M, Jilwan M, Raghavan P, Huang E, Clifford RJ, Mongkolwat P, Kleper V, Freymann J, Kirby J, Zinn PO, Moreno CS, Jaffe C, Colen R, Rubin DL, Saltz J, Flanders A, Brat DJ.

Radiology. 2013 May;267(2):560-9. doi: 10.1148/radiol.13120118. Epub 2013 Feb 7.

21.

Hyperplasia of pancreatic beta cells and improved glucose tolerance in mice deficient in the FXYD2 subunit of Na,K-ATPase.

Arystarkhova E, Liu YB, Salazar C, Stanojevic V, Clifford RJ, Kaplan JH, Kidder GM, Sweadner KJ.

J Biol Chem. 2013 Mar 8;288(10):7077-85. doi: 10.1074/jbc.M112.401190. Epub 2013 Jan 23.

22.

Detection of bacterial 16S rRNA and identification of four clinically important bacteria by real-time PCR.

Clifford RJ, Milillo M, Prestwood J, Quintero R, Zurawski DV, Kwak YI, Waterman PE, Lesho EP, Mc Gann P.

PLoS One. 2012;7(11):e48558. doi: 10.1371/journal.pone.0048558. Epub 2012 Nov 6.

23.

Genome sequencing of pathogenic Rhodococcus spp.

Hang J, Clifford RJ, Yang Y, Riley MC, Mody RM, Kuschner RA, Lesho EP.

Emerg Infect Dis. 2012 Nov;18(11):1915-6. doi: 10.3201/eid1811.120818. No abstract available.

24.

Complete genome sequence of Providencia stuartii clinical isolate MRSN 2154.

Clifford RJ, Hang J, Riley MC, Onmus-Leone F, Kuschner RA, Lesho EP, Waterman PE.

J Bacteriol. 2012 Jul;194(14):3736-7. doi: 10.1128/JB.00615-12.

25.

Subunit isoform selectivity in assembly of Na,K-ATPase α-β heterodimers.

Tokhtaeva E, Clifford RJ, Kaplan JH, Sachs G, Vagin O.

J Biol Chem. 2012 Jul 27;287(31):26115-25. doi: 10.1074/jbc.M112.370734. Epub 2012 Jun 13.

26.

Complete sequence of a novel 178-kilobase plasmid carrying bla(NDM-1) in a Providencia stuartii strain isolated in Afghanistan.

McGann P, Hang J, Clifford RJ, Yang Y, Kwak YI, Kuschner RA, Lesho EP, Waterman PE.

Antimicrob Agents Chemother. 2012 Apr;56(4):1673-9. doi: 10.1128/AAC.05604-11. Epub 2012 Jan 30.

27.

Novel pathway analysis of genomic polymorphism-cancer risk interaction in the Breast Cancer Prevention Trial.

Dunn BK, Greene MH, Kelley JM, Costantino JP, Clifford RJ, Hu Y, Tang G, Kazerouni N, Rosenberg PS, Meerzaman DM, Buetow KH.

Int J Mol Epidemiol Genet. 2010;1(4):332-49. Epub 2010 Sep 5.

28.

Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.

Clifford RJ, Zhang J, Meerzaman DM, Lyu MS, Hu Y, Cultraro CM, Finney RP, Kelley JM, Efroni S, Greenblum SI, Nguyen CV, Rowe WL, Sharma S, Wu G, Yan C, Zhang H, Chung YH, Kim JA, Park NH, Song IH, Buetow KH.

Hepatology. 2010 Dec;52(6):2034-43. doi: 10.1002/hep.23943.

PMID:
21105107
29.

Genome wide analysis of DNA copy number neutral loss of heterozygosity (CNNLOH) and its relation to gene expression in esophageal squamous cell carcinoma.

Hu N, Clifford RJ, Yang HH, Wang C, Goldstein AM, Ding T, Taylor PR, Lee MP.

BMC Genomics. 2010 Oct 18;11:576. doi: 10.1186/1471-2164-11-576.

30.

Novel functions for TAF7, a regulator of TAF1-independent transcription.

Devaiah BN, Lu H, Gegonne A, Sercan Z, Zhang H, Clifford RJ, Lee MP, Singer DS.

J Biol Chem. 2010 Dec 10;285(50):38772-80. doi: 10.1074/jbc.M110.173864. Epub 2010 Oct 11.

31.

Delineating genetic alterations for tumor progression in the MCF10A series of breast cancer cell lines.

Kadota M, Yang HH, Gomez B, Sato M, Clifford RJ, Meerzaman D, Dunn BK, Wakefield LM, Lee MP.

PLoS One. 2010 Feb 15;5(2):e9201. doi: 10.1371/journal.pone.0009201.

32.

Regulation of Na,K-ATPase subunit abundance by translational repression.

Clifford RJ, Kaplan JH.

J Biol Chem. 2009 Aug 21;284(34):22905-15. doi: 10.1074/jbc.M109.030536. Epub 2009 Jun 24.

33.

JAK mutations in high-risk childhood acute lymphoblastic leukemia.

Mullighan CG, Zhang J, Harvey RC, Collins-Underwood JR, Schulman BA, Phillips LA, Tasian SK, Loh ML, Su X, Liu W, Devidas M, Atlas SR, Chen IM, Clifford RJ, Gerhard DS, Carroll WL, Reaman GH, Smith M, Downing JR, Hunger SP, Willman CL.

Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9414-8. doi: 10.1073/pnas.0811761106. Epub 2009 May 22.

34.

Deletion of IKZF1 and prognosis in acute lymphoblastic leukemia.

Mullighan CG, Su X, Zhang J, Radtke I, Phillips LA, Miller CB, Ma J, Liu W, Cheng C, Schulman BA, Harvey RC, Chen IM, Clifford RJ, Carroll WL, Reaman G, Bowman WP, Devidas M, Gerhard DS, Yang W, Relling MV, Shurtleff SA, Campana D, Borowitz MJ, Pui CH, Smith M, Hunger SP, Willman CL, Downing JR; Children's Oncology Group.

N Engl J Med. 2009 Jan 29;360(5):470-80. doi: 10.1056/NEJMoa0808253. Epub 2009 Jan 7.

35.

beta-Subunit overexpression alters the stoicheometry of assembled Na-K-ATPase subunits in MDCK cells.

Clifford RJ, Kaplan JH.

Am J Physiol Renal Physiol. 2008 Nov;295(5):F1314-23. doi: 10.1152/ajprenal.90406.2008. Epub 2008 Aug 13.

36.

Selective basolateral localization of overexpressed Na-K-ATPase beta1- and beta2- subunits is disrupted by butryate treatment of MDCK cells.

Laughery MD, Clifford RJ, Chi Y, Kaplan JH.

Am J Physiol Renal Physiol. 2007 Jun;292(6):F1718-25. Epub 2007 Mar 6.

37.

Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach.

Zhang J, Finney RP, Clifford RJ, Derr LK, Buetow KH.

Genomics. 2005 Mar;85(3):297-308.

PMID:
15718097
38.

Bioinformatics tools for single nucleotide polymorphism discovery and analysis.

Clifford RJ, Edmonson MN, Nguyen C, Scherpbier T, Hu Y, Buetow KH.

Ann N Y Acad Sci. 2004 May;1020:101-9. Review.

PMID:
15208187
39.

Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.

Clifford RJ, Edmonson MN, Nguyen C, Buetow KH.

Bioinformatics. 2004 May 1;20(7):1006-14. Epub 2004 Jan 29.

PMID:
14751981
42.

Professional treatment of the racing greyhound.

Clifford RJ.

Vet Rec. 1988 Mar 19;122(12):286. No abstract available.

PMID:
3376398
43.

Distemper in imported greyhounds.

Clifford RJ.

Vet Rec. 1987 Jul 4;121(1):23. No abstract available.

PMID:
3629881
44.

Caffeine--the potential for its abuse in the racing greyhound.

Clifford RJ.

Vet Rec. 1987 Jun 20;120(25):592-5. Review.

PMID:
3307113
45.

Use of chlorbutol in greyhounds.

Clifford RJ.

Vet Rec. 1986 Nov 22;119(21):534. No abstract available.

PMID:
3811162

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