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Mapping Hidden Residual Structure within the Myc bHLH-LZ Domain Using Chemical Denaturant Titration.

Panova S, Cliff MJ, Macek P, Blackledge M, Jensen MR, Nissink JWM, Embrey KJ, Davies R, Waltho JP.

Structure. 2019 Oct 1;27(10):1537-1546.e4. doi: 10.1016/j.str.2019.07.006. Epub 2019 Aug 8.


Effect of sulfite addition and pied de cuve inoculation on the microbial communities and sensory profiles of Chardonnay wines: dominance of indigenous Saccharomyces uvarum at a commercial winery.

Morgan SC, McCarthy GC, Watters BS, Tantikachornkiat M, Zigg I, Cliff MA, Durall DM.

FEMS Yeast Res. 2019 Aug 1;19(5). pii: foz049. doi: 10.1093/femsyr/foz049.


Corrigendum to "Aging effects on functional auditory and visual processing using fMRI with variable sensory loading" [Cortex 49 (2013) 1304-1313].

Cliff M, Joyce DW, Lamar M, Dannhauser T, Tracy DK, Shergill SS.

Cortex. 2019 Dec;121:488. doi: 10.1016/j.cortex.2019.06.001. Epub 2019 Jun 20. No abstract available.


Nonequivalence of Second Sphere "Noncatalytic" Residues in Pentaerythritol Tetranitrate Reductase in Relation to Local Dynamics Linked to H-Transfer in Reactions with NADH and NADPH Coenzymes.

Iorgu AI, Baxter NJ, Cliff MJ, Levy C, Waltho JP, Hay S, Scrutton NS.

ACS Catal. 2018 Dec 7;8(12):11589-11599. doi: 10.1021/acscatal.8b02810. Epub 2018 Oct 26.


Equatorial Active Site Compaction and Electrostatic Reorganization in Catechol-O-methyltransferase.

Czarnota S, Johannissen LO, Baxter NJ, Rummel F, Wilson AL, Cliff MJ, Levy CW, Scrutton NS, Waltho JP, Hay S.

ACS Catal. 2019 May 3;9(5):4394-4401. doi: 10.1021/acscatal.9b00174. Epub 2019 Apr 9.


Isotopically labeled flavoenzymes and their uses in probing reaction mechanisms.

Iorgu AI, Cliff MJ, Waltho JP, Scrutton NS, Hay S.

Methods Enzymol. 2019;620:145-166. doi: 10.1016/bs.mie.2019.03.009. Epub 2019 Mar 29.


Enzymatic Carboxylation of 2-Furoic Acid Yields 2,5-Furandicarboxylic Acid (FDCA).

Payne KAP, Marshall SA, Fisher K, Cliff MJ, Cannas DM, Yan C, Heyes DJ, Parker DA, Larrosa I, Leys D.

ACS Catal. 2019 Apr 5;9(4):2854-2865. doi: 10.1021/acscatal.8b04862. Epub 2019 Feb 15.


The effect of sulfur dioxide addition at crush on the fungal and bacterial communities and the sensory attributes of Pinot gris wines.

Morgan SC, Tantikachornkiat M, Scholl CM, Benson NL, Cliff MA, Durall DM.

Int J Food Microbiol. 2019 Feb 2;290:1-14. doi: 10.1016/j.ijfoodmicro.2018.09.020. Epub 2018 Sep 25.


Active neurocysticercosis at the Hospital for Tropical Diseases, London: a clinical case series.

Hunter E, Cliff M, Armstrong M, Manji H, Jäger HR, Chiodini P, Brown M.

Trans R Soc Trop Med Hyg. 2018 Jul 1;112(7):326-334. doi: 10.1093/trstmh/try060.


Myc phosphorylation in its basic helix-loop-helix region destabilizes transient α-helical structures, disrupting Max and DNA binding.

Macek P, Cliff MJ, Embrey KJ, Holdgate GA, Nissink JWM, Panova S, Waltho JP, Davies RA.

J Biol Chem. 2018 Jun 15;293(24):9301-9310. doi: 10.1074/jbc.RA118.002709. Epub 2018 Apr 25.


The role of conserved residues in Fdc decarboxylase in prenylated flavin mononucleotide oxidative maturation, cofactor isomerization, and catalysis.

Bailey SS, Payne KAP, Fisher K, Marshall SA, Cliff MJ, Spiess R, Parker DA, Rigby SEJ, Leys D.

J Biol Chem. 2018 Feb 16;293(7):2272-2287. doi: 10.1074/jbc.RA117.000881. Epub 2017 Dec 19.


1H, 15N and 13C backbone resonance assignments of pentaerythritol tetranitrate reductase from Enterobacter cloacae PB2.

Iorgu AI, Baxter NJ, Cliff MJ, Waltho JP, Hay S, Scrutton NS.

Biomol NMR Assign. 2018 Apr;12(1):79-83. doi: 10.1007/s12104-017-9791-2. Epub 2017 Nov 22.


1H, 15N, 13C backbone resonance assignments of human phosphoglycerate kinase in a transition state analogue complex with ADP, 3-phosphoglycerate and magnesium trifluoride.

Serimbetov Z, Baxter NJ, Cliff MJ, Waltho JP.

Biomol NMR Assign. 2017 Oct;11(2):251-256. doi: 10.1007/s12104-017-9758-3. Epub 2017 Sep 2.


Assessing the Influence of Mutation on GTPase Transition States by Using X-ray Crystallography, 19 F NMR, and DFT Approaches.

Jin Y, Molt RW Jr, Pellegrini E, Cliff MJ, Bowler MW, Richards NGJ, Blackburn GM, Waltho JP.

Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9732-9735. doi: 10.1002/anie.201703074. Epub 2017 May 24.


1H, 15N, 13C backbone resonance assignments of human soluble catechol O-methyltransferase in complex with S-adenosyl-L-methionine and 3,5-dinitrocatechol.

Czarnota S, Baxter NJ, Cliff MJ, Waltho JP, Scrutton NS, Hay S.

Biomol NMR Assign. 2017 Apr;11(1):57-61. doi: 10.1007/s12104-016-9720-9. Epub 2016 Dec 15.


Structural Basis for Selective Interaction between the ESCRT Regulator HD-PTP and UBAP1.

Gahloth D, Levy C, Heaven G, Stefani F, Wunderley L, Mould P, Cliff MJ, Bella J, Fielding AJ, Woodman P, Tabernero L.

Structure. 2016 Dec 6;24(12):2115-2126. doi: 10.1016/j.str.2016.10.006. Epub 2016 Nov 10.


Characterizing monoclonal antibody formulations in arginine glutamate solutions using 1H NMR spectroscopy.

Kheddo P, Cliff MJ, Uddin S, van der Walle CF, Golovanov AP.

MAbs. 2016 Oct;8(7):1245-1258. Epub 2016 Aug 11.


Making the longest sugars: a chemical synthesis of heparin-related [4] n oligosaccharides from 16-mer to 40-mer.

Hansen SU, Miller GJ, Cliff MJ, Jayson GC, Gardiner JM.

Chem Sci. 2015 Nov 1;6(11):6158-6164. doi: 10.1039/c5sc02091c. Epub 2015 Jul 24.


Use of descriptive analysis and preference mapping for early-stage assessment of new and established apples.

Cliff MA, Stanich K, Lu R, Hampson CR.

J Sci Food Agric. 2016 Apr;96(6):2170-83. doi: 10.1002/jsfa.7334. Epub 2015 Aug 7.


Functional characterization of individual- and mixed-Burgundian Saccharomyces cerevisiae isolates for fermentation of Pinot noir.

Terrell E, Cliff MA, Van Vuuren HJ.

Molecules. 2015 Mar 19;20(3):5112-36. doi: 10.3390/molecules20035112.


Real-time pure shift ¹⁵N HSQC of proteins: a real improvement in resolution and sensitivity.

Kiraly P, Adams RW, Paudel L, Foroozandeh M, Aguilar JA, Timári I, Cliff MJ, Nilsson M, Sándor P, Batta G, Waltho JP, Kövér KE, Morris GA.

J Biomol NMR. 2015 May;62(1):43-52. doi: 10.1007/s10858-015-9913-z. Epub 2015 Mar 4.


Proteoglycans and their heterogeneous glycosaminoglycans at the atomic scale.

Sattelle BM, Shakeri J, Cliff MJ, Almond A.

Biomacromolecules. 2015 Mar 9;16(3):951-61. doi: 10.1021/bm5018386. Epub 2015 Feb 16.


Descriptive and hedonic analyses of low-Phe food formulations containing corn (Zea mays) seedling roots: toward development of a dietary supplement for individuals with phenylketonuria.

Cliff MA, Law JR, Lücker J, Scaman CH, Kermode AR.

J Sci Food Agric. 2016 Jan 15;96(1):140-9. doi: 10.1002/jsfa.7074. Epub 2015 Feb 5.


α-Fluorophosphonates reveal how a phosphomutase conserves transition state conformation over hexose recognition in its two-step reaction.

Jin Y, Bhattasali D, Pellegrini E, Forget SM, Baxter NJ, Cliff MJ, Bowler MW, Jakeman DL, Blackburn GM, Waltho JP.

Proc Natl Acad Sci U S A. 2014 Aug 26;111(34):12384-9. doi: 10.1073/pnas.1402850111. Epub 2014 Aug 7.


Simultaneously enhancing spectral resolution and sensitivity in heteronuclear correlation NMR spectroscopy.

Paudel L, Adams RW, Király P, Aguilar JA, Foroozandeh M, Cliff MJ, Nilsson M, Sándor P, Waltho JP, Morris GA.

Angew Chem Int Ed Engl. 2013 Oct 25;52(44):11616-9. doi: 10.1002/anie.201305709. Epub 2013 Sep 6.


Systematic comparison of hedonic ranking and rating methods demonstrates few practical differences.

Kozak M, Cliff MA.

J Food Sci. 2013 Aug;78(8):S1257-63. doi: 10.1111/1750-3841.12173. Epub 2013 Jul 1.


Clinical outcomes of single versus staged hybrid repair for thoracoabdominal aortic aneurysm.

Canaud L, Karthikesalingam A, Jackson D, Cresswell L, Cliff M, Markar SS, Maytham G, Black S, Thompson M.

J Vasc Surg. 2013 Nov;58(5):1192-200. doi: 10.1016/j.jvs.2013.04.061. Epub 2013 Jun 27. Review.


Descriptive analysis and early-stage consumer acceptance of yogurts fermented with carrot juice.

Cliff MA, Fan L, Sanford K, Stanich K, Doucette C, Raymond N.

J Dairy Sci. 2013 Jul;96(7):4160-72. doi: 10.3168/jds.2012-6287. Epub 2013 May 9.


The CouPSTU and TarPQM transporters in Rhodopseudomonas palustris: redundant, promiscuous uptake systems for lignin-derived aromatic substrates.

Salmon RC, Cliff MJ, Rafferty JB, Kelly DJ.

PLoS One. 2013;8(3):e59844. doi: 10.1371/journal.pone.0059844. Epub 2013 Mar 28.


Charge-balanced metal fluoride complexes for protein kinase A with adenosine diphosphate and substrate peptide SP20.

Jin Y, Cliff MJ, Baxter NJ, Dannatt HR, Hounslow AM, Bowler MW, Blackburn GM, Waltho JP.

Angew Chem Int Ed Engl. 2012 Dec 3;51(49):12242-5. doi: 10.1002/anie.201204266. Epub 2012 Nov 4. No abstract available.


Mapping local structural perturbations in the native state of stefin B (cystatin B) under amyloid forming conditions.

Paramore R, Morgan GJ, Davis PJ, Sharma CA, Hounslow A, Taler-Verčič A, Zerovnik E, Waltho JP, Cliff MJ, Staniforth RA.

Front Mol Neurosci. 2012 Oct 12;5:94. doi: 10.3389/fnmol.2012.00094. eCollection 2012.


Aging effects on functional auditory and visual processing using fMRI with variable sensory loading.

Cliff M, Joyce DW, Lamar M, Dannhauser T, Tracy DK, Shergill SS.

Cortex. 2013 May;49(5):1304-13. doi: 10.1016/j.cortex.2012.04.003. Epub 2012 Apr 13. Erratum in: Cortex. 2019 Dec;121:488.


Near attack conformers dominate β-phosphoglucomutase complexes where geometry and charge distribution reflect those of substrate.

Griffin JL, Bowler MW, Baxter NJ, Leigh KN, Dannatt HR, Hounslow AM, Blackburn GM, Webster CE, Cliff MJ, Waltho JP.

Proc Natl Acad Sci U S A. 2012 May 1;109(18):6910-5. doi: 10.1073/pnas.1116855109. Epub 2012 Apr 13.


Prioritization of charge over geometry in transition state analogues of a dual specificity protein kinase.

Xiaoxia L, Marston JP, Baxter NJ, Hounslow AM, Yufen Z, Blackburn GM, Cliff MJ, Waltho JP.

J Am Chem Soc. 2011 Mar 23;133(11):3989-94. doi: 10.1021/ja1090035. Epub 2011 Feb 24.


Transition state analogue structures of human phosphoglycerate kinase establish the importance of charge balance in catalysis.

Cliff MJ, Bowler MW, Varga A, Marston JP, Szabó J, Hounslow AM, Baxter NJ, Blackburn GM, Vas M, Waltho JP.

J Am Chem Soc. 2010 May 12;132(18):6507-16. doi: 10.1021/ja100974t.


Atomic details of near-transition state conformers for enzyme phosphoryl transfer revealed by MgF-3 rather than by phosphoranes.

Baxter NJ, Bowler MW, Alizadeh T, Cliff MJ, Hounslow AM, Wu B, Berkowitz DB, Williams NH, Blackburn GM, Waltho JP.

Proc Natl Acad Sci U S A. 2010 Mar 9;107(10):4555-60. doi: 10.1073/pnas.0910333106. Epub 2010 Feb 17.


Structural tightening and interdomain communication in the catalytic cycle of phosphoglycerate kinase.

Marston JP, Cliff MJ, Reed MA, Blackburn GM, Hounslow AM, Craven CJ, Waltho JP.

J Mol Biol. 2010 Feb 19;396(2):345-60. doi: 10.1016/j.jmb.2009.11.052. Epub 2009 Nov 26.


The denatured state of N-PGK is compact and predominantly disordered.

Cliff MJ, Craven CJ, Marston JP, Hounslow AM, Clarke AR, Waltho JP.

J Mol Biol. 2009 Jan 9;385(1):266-77. doi: 10.1016/j.jmb.2008.10.004. Epub 2008 Oct 11.


Fhit proteins can also recognize substrates other than dinucleoside polyphosphates.

Guranowski A, Wojdyła AM, Pietrowska-Borek M, Bieganowski P, Khurs EN, Cliff MJ, Blackburn GM, Błaziak D, Stec WJ.

FEBS Lett. 2008 Sep 3;582(20):3152-8. doi: 10.1016/j.febslet.2008.07.060. Epub 2008 Aug 9.


Anionic charge is prioritized over geometry in aluminum and magnesium fluoride transition state analogs of phosphoryl transfer enzymes.

Baxter NJ, Blackburn GM, Marston JP, Hounslow AM, Cliff MJ, Bermel W, Williams NH, Hollfelder F, Wemmer DE, Waltho JP.

J Am Chem Soc. 2008 Mar 26;130(12):3952-8. doi: 10.1021/ja078000n. Epub 2008 Mar 5.


Enzymatic properties of the lactate dehydrogenase enzyme from Plasmodium falciparum.

Shoemark DK, Cliff MJ, Sessions RB, Clarke AR.

FEBS J. 2007 Jun;274(11):2738-48. Epub 2007 Apr 25.


Redox-state-dependent complex formation between pseudoazurin and nitrite reductase.

Impagliazzo A, Blok AJ, Cliff MJ, Ladbury JE, Ubbink M.

J Am Chem Soc. 2007 Jan 10;129(1):226-33.


A thiol labelling competition experiment as a probe for sidechain packing in the kinetic folding intermediate of N-PGK.

Cliff MJ, Alizadeh T, Jelinska C, Craven CJ, Staniforth RA, Waltho JP.

J Mol Biol. 2006 Dec 8;364(4):810-23. Epub 2006 Sep 12.


Elucidation of steps in the capture of a protein substrate for efficient encapsulation by GroE.

Cliff MJ, Limpkin C, Cameron A, Burston SG, Clarke AR.

J Biol Chem. 2006 Jul 28;281(30):21266-75. Epub 2006 May 9.


Conformational changes in the AAA ATPase p97-p47 adaptor complex.

Beuron F, Dreveny I, Yuan X, Pye VE, McKeown C, Briggs LC, Cliff MJ, Kaneko Y, Wallis R, Isaacson RL, Ladbury JE, Matthews SJ, Kondo H, Zhang X, Freemont PS.

EMBO J. 2006 May 3;25(9):1967-76. Epub 2006 Apr 6.


Conformational diversity in the TPR domain-mediated interaction of protein phosphatase 5 with Hsp90.

Cliff MJ, Harris R, Barford D, Ladbury JE, Williams MA.

Structure. 2006 Mar;14(3):415-26.


The denatured state under native conditions: a non-native-like collapsed state of N-PGK.

Reed MA, Jelinska C, Syson K, Cliff MJ, Splevins A, Alizadeh T, Hounslow AM, Staniforth RA, Clarke AR, Craven CJ, Waltho JP.

J Mol Biol. 2006 Mar 24;357(2):365-72. Epub 2006 Jan 11.


Low energy pathways and non-native interactions: the influence of artificial disulfide bridges on the mechanism of folding.

Mason JM, Cliff MJ, Sessions RB, Clarke AR.

J Biol Chem. 2005 Dec 9;280(49):40494-9. Epub 2005 Oct 10.

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