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Items: 1 to 50 of 64

1.

Xinfangfangia humi sp. nov., isolated from soil amended with humic acid.

Kämpfer P, Busse HJ, McInroy JA, Criscuolo A, Clermont D, Glaeser SP.

Int J Syst Evol Microbiol. 2019 Jul;69(7):2070-2075. doi: 10.1099/ijsem.0.003434. Epub 2019 May 17.

PMID:
31099734
2.

The use of genomic DNA sequences as type material for valid publication of bacterial species names will have severe implications for clinical microbiology and related disciplines.

Bisgaard M, Christensen H, Clermont D, Dijkshoorn L, Janda JM, Moore ERB, Nemec A, Nørskov-Lauritsen N, Overmann J, Reubsaet FAG.

Diagn Microbiol Infect Dis. 2019 Sep;95(1):102-103. doi: 10.1016/j.diagmicrobio.2019.03.007. Epub 2019 Mar 22. No abstract available.

PMID:
30981555
3.

Pigmentiphaga humi sp. nov., isolated from soil amended with humic acid.

Kämpfer P, Busse HJ, Criscuolo A, Bizet C, Clermont D, McInroy JA, Glaeser SP.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1573-1578. doi: 10.1099/ijsem.0.003355. Epub 2019 Apr 8.

PMID:
30958260
4.

Paracoccus haematequi sp. nov., isolated from horse blood.

Kämpfer P, Busse HJ, Galatis H, Criscuolo A, Clermont D, Bizet C, Glaeser SP.

Int J Syst Evol Microbiol. 2019 Jun;69(6):1682-1688. doi: 10.1099/ijsem.0.003376. Epub 2019 Apr 8.

PMID:
30958257
5.

DNAshell Protects DNA Stored at Room Temperature for Downstream Next-Generation Sequencing Studies.

Washetine K, Heeke S, Ribeyre C, Bourreau C, Normand C, Blons H, Laurent-Puig P, Mulot C, Clermont D, David M, Clément B, Dagher G, Hofman P.

Biopreserv Biobank. 2019 Aug;17(4):352-354. doi: 10.1089/bio.2018.0129. Epub 2019 Mar 26. No abstract available.

PMID:
30912674
6.

Filibacter tadaridae sp. nov., isolated from within a guano pile from a colony of Mexican free-tailed bats Tadarida brasiliensis.

Kämpfer P, Bizet C, Clermont D, Criscuolo A, Kloepper LN, Duncan MB, McInroy JA, Kloepper JW, Schumann P, Glaeser SP.

Int J Syst Evol Microbiol. 2019 May;69(5):1438-1442. doi: 10.1099/ijsem.0.003334. Epub 2019 Mar 20.

PMID:
30893028
7.

Revising the taxonomy of the Acinetobacter lwoffii group: The description of Acinetobacter pseudolwoffii sp. nov. and emended description of Acinetobacter lwoffii.

Nemec A, Radolfová-Křížová L, Maixnerová M, Nemec M, Clermont D, Bzdil J, Ježek P, Španělová P.

Syst Appl Microbiol. 2019 Mar;42(2):159-167. doi: 10.1016/j.syapm.2018.10.004. Epub 2018 Oct 12.

PMID:
30392743
8.

Draft Genome Sequence of the Fish Pathogen Flavobacterium columnare Genomovar III Strain PH-97028 (=CIP 109753).

Criscuolo A, Chesneau O, Clermont D, Bizet C.

Genome Announc. 2018 Apr 5;6(14). pii: e00222-18. doi: 10.1128/genomeA.00222-18.

9.

Manual and expert annotation of the nearly complete genome sequence of Staphylococcus sciuri strain ATCC 29059: A reference for the oxidase-positive staphylococci that supports the atypical phenotypic features of the species group.

Christo-Foroux E, Vallaeys T, Loux V, Dassa E, Deutscher J, Wandersman C, Livernois A, Hot C, Criscuolo A, Dauga C, Clermont D, Chesneau O.

Syst Appl Microbiol. 2017 Oct;40(7):401-410. doi: 10.1016/j.syapm.2017.07.002. Epub 2017 Aug 24.

PMID:
28890241
10.

Revisiting the taxonomy of the genus Elizabethkingia using whole-genome sequencing, optical mapping, and MALDI-TOF, along with proposal of three novel Elizabethkingia species: Elizabethkingia bruuniana sp. nov., Elizabethkingia ursingii sp. nov., and Elizabethkingia occulta sp. nov.

Nicholson AC, Gulvik CA, Whitney AM, Humrighouse BW, Graziano J, Emery B, Bell M, Loparev V, Juieng P, Gartin J, Bizet C, Clermont D, Criscuolo A, Brisse S, McQuiston JR.

Antonie Van Leeuwenhoek. 2018 Jan;111(1):55-72. doi: 10.1007/s10482-017-0926-3. Epub 2017 Aug 30.

11.

Psychrobacter pasteurii and Psychrobacter piechaudii sp. nov., two novel species within the genus Psychrobacter.

Hurtado-Ortiz R, Nazimoudine A, Criscuolo A, Hugon P, Mornico D, Brisse S, Bizet C, Clermont D.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3192-3197. doi: 10.1099/ijsem.0.002065. Epub 2017 Aug 25.

PMID:
28840795
12.

Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain.

Perrin A, Larsonneur E, Nicholson AC, Edwards DJ, Gundlach KM, Whitney AM, Gulvik CA, Bell ME, Rendueles O, Cury J, Hugon P, Clermont D, Enouf V, Loparev V, Juieng P, Monson T, Warshauer D, Elbadawi LI, Walters MS, Crist MB, Noble-Wang J, Borlaug G, Rocha EPC, Criscuolo A, Touchon M, Davis JP, Holt KE, McQuiston JR, Brisse S.

Nat Commun. 2017 May 24;8:15483. doi: 10.1038/ncomms15483.

13.

Citrobacter europaeus sp. nov., isolated from water and human faecal samples.

Ribeiro TG, Clermont D, Branquinho R, Machado E, Peixe L, Brisse S.

Int J Syst Evol Microbiol. 2017 Jan;67(1):170-173. doi: 10.1099/ijsem.0.001606. Epub 2017 Feb 20.

PMID:
27902229
14.

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX.

Nat Microbiol. 2016 Oct 3;1(11):16209. doi: 10.1038/nmicrobiol.2016.209. No abstract available.

PMID:
27694821
15.

Effectiveness and safety of collagenase Clostridium histolyticum in Dupuytren's disease : an observational study in Belgium.

Verstreken F, Degreef I, Decramer A, Libberecht K, Vanhove W, Datco A, Vanhaecke J, Clermont D, Duerinckx J.

Acta Orthop Belg. 2016 Aug;82(2):397-404.

PMID:
27682305
16.

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX.

Nat Microbiol. 2016 Mar 21;1:16027. doi: 10.1038/nmicrobiol.2016.27. Erratum in: Nat Microbiol. 2016 Oct 03;1(11):16209.

PMID:
27572446
17.

Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.

Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, Azevedo V, Silva A.

Genome Announc. 2016 Aug 11;4(4). pii: e00683-16. doi: 10.1128/genomeA.00683-16.

18.

Paenibacillus faecis sp. nov., isolated from human faeces.

Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet C.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4621-6. doi: 10.1099/ijsem.0.000622. Epub 2015 Sep 18.

PMID:
26394885
19.

Improving survival and storage stability of bacteria recalcitrant to freeze-drying: a coordinated study by European culture collections.

Peiren J, Buyse J, De Vos P, Lang E, Clermont D, Hamon S, Bégaud E, Bizet C, Pascual J, Ruvira MA, Macián MC, Arahal DR.

Appl Microbiol Biotechnol. 2015 Apr;99(8):3559-71. doi: 10.1007/s00253-015-6476-6. Epub 2015 Mar 17.

PMID:
25773973
20.

Multilocus sequence analysis of the genus Citrobacter and description of Citrobacter pasteurii sp. nov.

Clermont D, Motreff L, Passet V, Fernandez JC, Bizet C, Brisse S.

Int J Syst Evol Microbiol. 2015 May;65(Pt 5):1486-90. doi: 10.1099/ijs.0.000122. Epub 2015 Feb 16.

PMID:
25687346
21.

Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.

Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ, Holden MT, Poyart C, Glaser P.

Nat Commun. 2015 Jan 28;6:6108. doi: 10.1038/ncomms7108. No abstract available.

22.

The NAD(+)-dependent SIRT1 deacetylase translates a metabolic switch into regulatory epigenetics in skeletal muscle stem cells.

Ryall JG, Dell'Orso S, Derfoul A, Juan A, Zare H, Feng X, Clermont D, Koulnis M, Gutierrez-Cruz G, Fulco M, Sartorelli V.

Cell Stem Cell. 2015 Feb 5;16(2):171-83. doi: 10.1016/j.stem.2014.12.004. Epub 2015 Jan 15.

23.

The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.

Touchon M, Cury J, Yoon EJ, Krizova L, Cerqueira GC, Murphy C, Feldgarden M, Wortman J, Clermont D, Lambert T, Grillot-Courvalin C, Nemec A, Courvalin P, Rocha EP.

Genome Biol Evol. 2014 Oct 13;6(10):2866-82. doi: 10.1093/gbe/evu225.

24.

Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline.

Da Cunha V, Davies MR, Douarre PE, Rosinski-Chupin I, Margarit I, Spinali S, Perkins T, Lechat P, Dmytruk N, Sauvage E, Ma L, Romi B, Tichit M, Lopez-Sanchez MJ, Descorps-Declere S, Souche E, Buchrieser C, Trieu-Cuot P, Moszer I, Clermont D, Maione D, Bouchier C, McMillan DJ, Parkhill J, Telford JL, Dougan G, Walker MJ; DEVANI Consortium, Holden MTG, Poyart C, Glaser P.

Nat Commun. 2014 Aug 4;5:4544. doi: 10.1038/ncomms5544. Erratum in: Nat Commun. 2015;6:6108.

25.

Assessment of DNA encapsulation, a new room-temperature DNA storage method.

Clermont D, Santoni S, Saker S, Gomard M, Gardais E, Bizet C.

Biopreserv Biobank. 2014 Jun;12(3):176-83. doi: 10.1089/bio.2013.0082.

26.

Identification of 50 class D β-lactamases and 65 Acinetobacter-derived cephalosporinases in Acinetobacter spp.

Périchon B, Goussard S, Walewski V, Krizova L, Cerqueira G, Murphy C, Feldgarden M, Wortman J, Clermont D, Nemec A, Courvalin P.

Antimicrob Agents Chemother. 2014;58(2):936-49. doi: 10.1128/AAC.01261-13. Epub 2013 Nov 25.

27.

The intestinal microbiota modulates the anticancer immune effects of cyclophosphamide.

Viaud S, Saccheri F, Mignot G, Yamazaki T, Daillère R, Hannani D, Enot DP, Pfirschke C, Engblom C, Pittet MJ, Schlitzer A, Ginhoux F, Apetoh L, Chachaty E, Woerther PL, Eberl G, Bérard M, Ecobichon C, Clermont D, Bizet C, Gaboriau-Routhiau V, Cerf-Bensussan N, Opolon P, Yessaad N, Vivier E, Ryffel B, Elson CO, Doré J, Kroemer G, Lepage P, Boneca IG, Ghiringhelli F, Zitvogel L.

Science. 2013 Nov 22;342(6161):971-6. doi: 10.1126/science.1240537.

28.

Draft Genome Sequences of Lactobacillus equicursoris CIP 110162T and Lactobacillus sp. Strain CRBIP 24.137, Isolated from Thoroughbred Racehorse Feces and Human Urine, Respectively.

Cousin S, Loux V, Ma L, Creno S, Clermont D, Bizet C, Bouchier C.

Genome Announc. 2013 Aug 22;1(4). pii: e00663-13. doi: 10.1128/genomeA.00663-13.

29.

Draft Genome Sequence of Lactobacillus hominis Strain CRBIP 24.179T, Isolated from Human Intestine.

Cousin S, Creno S, Ma L, Clermont D, Loux V, Bizet C, Bouchier C.

Genome Announc. 2013 Aug 22;1(4). pii: e00662-13. doi: 10.1128/genomeA.00662-13.

30.

Draft Genome Sequence of Lactobacillus pasteurii CRBIP 24.76T.

Cousin S, Clermont D, Creno S, Ma L, Loux V, Bizet C, Bouchier C.

Genome Announc. 2013 Aug 22;1(4). pii: e00660-13. doi: 10.1128/genomeA.00660-13.

31.

Draft Genome Sequences of Five Strains of Lactobacillus acidophilus, Strain CIP 76.13T, Isolated from Humans, Strains CIRM-BIA 442 and CIRM-BIA 445, Isolated from Dairy Products, and Strains DSM 20242 and DSM 9126 of Unknown Origin.

Falentin H, Cousin S, Clermont D, Creno S, Ma L, Chuat V, Loux V, Rüdiger P, Bizet C, Bouchier C.

Genome Announc. 2013 Aug 22;1(4). pii: e00658-13. doi: 10.1128/genomeA.00658-13.

32.

Sequencing orphan species initiative (SOS): Filling the gaps in the 16S rRNA gene sequence database for all species with validly published names.

Yarza P, Spröer C, Swiderski J, Mrotzek N, Spring S, Tindall BJ, Gronow S, Pukall R, Klenk HP, Lang E, Verbarg S, Crouch A, Lilburn T, Beck B, Unosson C, Cardew S, Moore ER, Gomila M, Nakagawa Y, Janssens D, De Vos P, Peiren J, Suttels T, Clermont D, Bizet C, Sakamoto M, Iida T, Kudo T, Kosako Y, Oshida Y, Ohkuma M, R Arahal D, Spieck E, Pommerening Roeser A, Figge M, Park D, Buchanan P, Cifuentes A, Munoz R, Euzéby JP, Schleifer KH, Ludwig W, Amann R, Glöckner FO, Rosselló-Móra R.

Syst Appl Microbiol. 2013 Feb;36(1):69-73. doi: 10.1016/j.syapm.2012.12.006. Epub 2013 Feb 11. Review.

PMID:
23410935
33.

Draft genome sequence of Lactobacillus gigeriorum CRBIP 24.85T, isolated from a chicken crop.

Cousin S, Ma L, Creno S, Clermont D, Loux V, Bizet C, Bouchier C.

J Bacteriol. 2012 Nov;194(21):5973. doi: 10.1128/JB.01427-12.

34.

The highly dynamic CRISPR1 system of Streptococcus agalactiae controls the diversity of its mobilome.

Lopez-Sanchez MJ, Sauvage E, Da Cunha V, Clermont D, Ratsima Hariniaina E, Gonzalez-Zorn B, Poyart C, Rosinski-Chupin I, Glaser P.

Mol Microbiol. 2012 Sep;85(6):1057-71. doi: 10.1111/j.1365-2958.2012.08172.x. Epub 2012 Jul 27.

35.

Lactobacillus pasteurii sp. nov. and Lactobacillus hominis sp. nov.

Cousin S, Motreff L, Gulat-Okalla ML, Gouyette C, Spröer C, Schumann P, Begaud E, Bouchier C, Clermont D, Bizet C.

Int J Syst Evol Microbiol. 2013 Jan;63(Pt 1):53-9. doi: 10.1099/ijs.0.036665-0. Epub 2012 Feb 10.

PMID:
22328611
36.

Lactobacillus gigeriorum sp. nov., isolated from chicken crop.

Cousin S, Gulat-Okalla ML, Motreff L, Gouyette C, Bouchier C, Clermont D, Bizet C.

Int J Syst Evol Microbiol. 2012 Feb;62(Pt 2):330-4. doi: 10.1099/ijs.0.028217-0. Epub 2011 Mar 18.

PMID:
21421927
37.

Listeria rocourtiae sp. nov.

Leclercq A, Clermont D, Bizet C, Grimont PA, Le Flèche-Matéos A, Roche SM, Buchrieser C, Cadet-Daniel V, Le Monnier A, Lecuit M, Allerberger F.

Int J Syst Evol Microbiol. 2010 Sep;60(Pt 9):2210-4. doi: 10.1099/ijs.0.017376-0. Epub 2009 Nov 13.

PMID:
19915117
38.

Pseudomonas brassicacearum subsp. neoaurantiaca subsp. nov., orange-pigmented bacteria isolated from soil and the rhizosphere of agricultural plants.

Ivanova EP, Christen R, Bizet C, Clermont D, Motreff L, Bouchier C, Zhukova NV, Crawford RJ, Kiprianova EA.

Int J Syst Evol Microbiol. 2009 Oct;59(Pt 10):2476-81. doi: 10.1099/ijs.0.009654-0. Epub 2009 Jul 21.

PMID:
19622656
39.

Microbacterium binotii sp. nov., isolated from human blood.

Clermont D, Diard S, Bouchier C, Vivier C, Bimet F, Motreff L, Welker M, Kallow W, Bizet C.

Int J Syst Evol Microbiol. 2009 May;59(Pt 5):1016-22. doi: 10.1099/ijs.0.003160-0.

PMID:
19406785
40.

Bacillus aeolius DSM 15084T (=CIP 107628T) is a strain of Bacillus licheniformis.

Pukall R, Schumann P, Clermont D, Bizet C.

Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1268-70. doi: 10.1099/ijs.0.2008/001388-0.

PMID:
18450726
41.

Characterization of the chromosomal class A beta-lactamase CKO from Citrobacter koseri.

Petrella S, Renard M, Ziental-Gelus N, Clermont D, Jarlier V, Sougakoff W.

FEMS Microbiol Lett. 2006 Jan;254(2):285-92.

42.

Taxonomic characterization of nine strains isolated from clinical and environmental specimens, and proposal of Corynebacterium tuberculostearicum sp. nov.

Feurer C, Clermont D, Bimet F, Candréa A, Jackson M, Glaser P, Bizet C, Dauga C.

Int J Syst Evol Microbiol. 2004 Jul;54(Pt 4):1055-61. Erratum in: Int J Syst Evol Microbiol. 2005 Mar;55(Pt 2):981.

PMID:
15280269
43.

Effect of acute marijuana on cardiovascular function and central nervous system pharmacokinetics of [(15)O]water: effect in occasional and chronic users.

Ponto LL, O'Leary DS, Koeppel J, Block RI, Watkins GL, Richmond JC, Ward CA, Clermont DA, Schmitt BA, Hichwa RD.

J Clin Pharmacol. 2004 Jul;44(7):751-66.

PMID:
15199080
44.

[15O]water pharmacokinetics: influence of age and gender in normal subjects.

Ponto LL, Watkins GL, Hichwa RD, Richmond JC, Clark J, Ward CA, Clermont DA.

Mol Imaging Biol. 2002 Mar;4(2):129-37. Erratum in: Mol Imaging Biol. 2002 May-Jun;4(3):264.

PMID:
14537135
45.

Contamination levels in blood samples drawn from the injection intravenous line.

Ponto LL, Graham MM, Richmond JC, Ward CA, Clermont DA, Schmitt BA, Clark J, Conklin A, Weldon L, Watkins GL, Madsen MT, Hichwa RD.

Mol Imaging Biol. 2002 Nov;4(6):410-4.

PMID:
14537105
46.

A sensitive and rapid method to determine the viability of freeze-dried bacterial cells.

Parthuisot N, Catala P, Lebaron P, Clermont D, Bizet C.

Lett Appl Microbiol. 2003;36(6):412-7.

47.

Gouty involvement of flexor tendons.

Schuind FA, Clermont D, Stallenberg B, Remmelink M, Pasteels JL.

Chir Main. 2003 Feb;22(1):46-50.

PMID:
12723310
48.

Identification of strains of Alcaligenes and Agrobacterium by a polyphasic approach.

Clermont D, Harmant C, Bizet C.

J Clin Microbiol. 2001 Sep;39(9):3104-9.

49.

Novel class A beta-lactamase Sed-1 from Citrobacter sedlakii: genetic diversity of beta-lactamases within the Citrobacter genus.

Petrella S, Clermont D, Casin I, Jarlier V, Sougakoff W.

Antimicrob Agents Chemother. 2001 Aug;45(8):2287-98.

50.

Genetic analysis of Enterococcus faecalis chromosome carrying mobile elements.

Clermont D, de Cespédès G, Delbos F, Horaud T.

Adv Exp Med Biol. 1997;418:1023-7. No abstract available.

PMID:
9331825

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