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Items: 21

1.

Microbial epidemiology and carriage studies for the evaluation of vaccines.

Coughtrie AL, Jefferies JM, Cleary DW, Doncaster CP, Faust SN, Kraaijeveld AR, Moore MV, Mullee MA, Roderick PJ, Webb JS, Yuen HM, Clarke SC.

J Med Microbiol. 2019 Oct;68(10):1408-1418. doi: 10.1099/jmm.0.001046. Review.

PMID:
31418679
2.

Serotype distribution of disease-causing Streptococcus pneumoniae in Thailand: A systematic review.

Hocknell RE, Cleary DW, Srifeungfung S, Clarke SC.

Vaccine. 2019 May 27;37(24):3159-3166. doi: 10.1016/j.vaccine.2019.04.085. Epub 2019 May 3. Review.

PMID:
31060951
3.

Microevolution of Neisseria lactamica during nasopharyngeal colonisation induced by controlled human infection.

Pandey A, Cleary DW, Laver JR, Gorringe A, Deasy AM, Dale AP, Morris PD, Didelot X, Maiden MCJ, Read RC.

Nat Commun. 2018 Nov 12;9(1):4753. doi: 10.1038/s41467-018-07235-5.

4.

Structure of the Recombinant Neisseria gonorrhoeae Adhesin Complex Protein (rNg-ACP) and Generation of Murine Antibodies with Bactericidal Activity against Gonococci.

Almonacid-Mendoza HL, Humbert MV, Dijokaite A, Cleary DW, Soo Y, Hung MC, Orr CM, Machelett MM, Tews I, Christodoulides M.

mSphere. 2018 Oct 10;3(5). pii: e00331-18. doi: 10.1128/mSphere.00331-18.

5.

Patients with Chronic Obstructive Pulmonary Disease harbour a variation of Haemophilus species.

Osman KL, Jefferies JMC, Woelk CH, Devos N, Pascal TG, Mortier MC, Devaster JM, Wilkinson TMA, Cleary DW, Clarke SC; AERIS Study Group.

Sci Rep. 2018 Oct 3;8(1):14734. doi: 10.1038/s41598-018-32973-3.

6.

Prevalence and antimicrobial susceptibilities of Acinetobacter baumannii and non-baumannii Acinetobacters from Terengganu, Malaysia and their carriage of carbapenemase genes.

Mohd Rani F, A Rahman NI, Ismail S, Abdullah FH, Othman N, Alattraqchi AG, Cleary DW, Clarke SC, Yeo CC.

J Med Microbiol. 2018 Nov;67(11):1538-1543. doi: 10.1099/jmm.0.000844. Epub 2018 Sep 25.

PMID:
30251951
7.

Ecology and diversity in upper respiratory tract microbial population structures from a cross-sectional community swabbing study.

Coughtrie AL, Morris DE, Anderson R, Begum N, Cleary DW, Faust SN, Jefferies JM, Kraaijeveld AR, Moore MV, Mullee MA, Roderick PJ, Tuck A, Whittaker RN, Yuen HM, Doncaster CP, Clarke SC.

J Med Microbiol. 2018 Aug;67(8):1096-1108. doi: 10.1099/jmm.0.000773. Epub 2018 Jun 21.

PMID:
29927372
8.

Correction to: Neisseria lactamica Y92-1009 complete genome sequence.

Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC.

Stand Genomic Sci. 2018 Feb 16;13:4. doi: 10.1186/s40793-017-0288-5. eCollection 2018.

9.

The adhesins of non-typeable Haemophilus influenzae.

Osman KL, Jefferies JM, Woelk CH, Cleary DW, Clarke SC.

Expert Rev Anti Infect Ther. 2018 Mar;16(3):187-196. doi: 10.1080/14787210.2018.1438263. Epub 2018 Feb 21. Review.

PMID:
29415569
10.

Acinetobacter spp. Infections in Malaysia: A Review of Antimicrobial Resistance Trends, Mechanisms and Epidemiology.

Mohd Rani F, A Rahman NI, Ismail S, Alattraqchi AG, Cleary DW, Clarke SC, Yeo CC.

Front Microbiol. 2017 Dec 12;8:2479. doi: 10.3389/fmicb.2017.02479. eCollection 2017. Review.

11.

Neisseria lactamica Y92-1009 complete genome sequence.

Pandey AK, Cleary DW, Laver JR, Maiden MCJ, Didelot X, Gorringe A, Read RC.

Stand Genomic Sci. 2017 Jul 24;12:41. doi: 10.1186/s40793-017-0250-6. eCollection 2017. Erratum in: Stand Genomic Sci. 2018 Feb 16;13:4.

12.

Pneumococcal conjugate vaccine implementation in middle-income countries.

Tricarico S, McNeil HC, Cleary DW, Head MG, Lim V, Yap IKS, Wie CC, Tan CS, Norazmi MN, Aziah I, Cheah ESG, Faust SN, Jefferies JMC, Roderick PJ, Moore M, Yuen HM, Newell ML, McGrath N, Doncaster CP, Kraaijeveld AR, Webb JS, Clarke SC.

Pneumonia (Nathan). 2017 Mar 25;9:6. doi: 10.1186/s41479-017-0030-5. eCollection 2017. Review.

13.

Secondary Bacterial Infections Associated with Influenza Pandemics.

Morris DE, Cleary DW, Clarke SC.

Front Microbiol. 2017 Jun 23;8:1041. doi: 10.3389/fmicb.2017.01041. eCollection 2017. Review.

14.

16S sequencing and functional analysis of the fecal microbiome during treatment of newly diagnosed pediatric inflammatory bowel disease.

Ashton JJ, Colquhoun CM, Cleary DW, Coelho T, Haggarty R, Mulder I, Batra A, Afzal NA, Beattie RM, Scott KP, Ennis S.

Medicine (Baltimore). 2017 Jun;96(26):e7347. doi: 10.1097/MD.0000000000007347.

15.

Informing pneumococcal conjugate vaccine policy in middle-income countries: The case of Malaysia.

Tricarico S, McNeil HC, Head MG, Cleary DW, Clarke SC; MYCarriage.

Vaccine. 2017 Apr 25;35(18):2288-2290. doi: 10.1016/j.vaccine.2017.03.053. Epub 2017 Mar 24. No abstract available.

16.

The rise and fall of pneumococcal serotypes carried in the PCV era.

Devine VT, Cleary DW, Jefferies JM, Anderson R, Morris DE, Tuck AC, Gladstone RA, O'Doherty G, Kuruparan P, Bentley SD, Faust SN, Clarke SC.

Vaccine. 2017 Mar 1;35(9):1293-1298. doi: 10.1016/j.vaccine.2017.01.035. Epub 2017 Feb 1.

PMID:
28161425
17.

Long-term antibiotic exposure in soil is associated with changes in microbial community structure and prevalence of class 1 integrons.

Cleary DW, Bishop AH, Zhang L, Topp E, Wellington EM, Gaze WH.

FEMS Microbiol Ecol. 2016 Oct;92(10). pii: fiw159. doi: 10.1093/femsec/fiw159. Epub 2016 Aug 5.

PMID:
27495240
18.

Analysis and Interpretation of the Human Microbiome.

Ashton JJ, Beattie RM, Ennis S, Cleary DW.

Inflamm Bowel Dis. 2016 Jul;22(7):1713-22. doi: 10.1097/MIB.0000000000000809. Review.

PMID:
27243592
19.

Comparative Genomics of Carriage and Disease Isolates of Streptococcus pneumoniae Serotype 22F Reveals Lineage-Specific Divergence and Niche Adaptation.

Cleary DW, Devine VT, Jefferies JM, Webb JS, Bentley SD, Gladstone RA, Faust SN, Clarke SC.

Genome Biol Evol. 2016 Apr 21;8(4):1243-51. doi: 10.1093/gbe/evw066.

20.

Strain discrimination of Yersinia pestis using a SERS-based electrochemically driven melting curve analysis of variable number tandem repeat sequences.

Papadopoulou E, Gale N, Goodchild SA, Cleary DW, Weller SA, Brown T, Bartlett PN.

Chem Sci. 2015 Mar 1;6(3):1846-1852. doi: 10.1039/c4sc03084b. Epub 2015 Jan 7.

21.

Using surface-enhanced Raman spectroscopy and electrochemically driven melting to discriminate Yersinia pestis from Y. pseudotuberculosis based on single nucleotide polymorphisms within unpurified polymerase chain reaction amplicons.

Papadopoulou E, Goodchild SA, Cleary DW, Weller SA, Gale N, Stubberfield MR, Brown T, Bartlett PN.

Anal Chem. 2015 Feb 3;87(3):1605-12. doi: 10.1021/ac503063c. Epub 2015 Jan 15.

PMID:
25551670

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