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Items: 32

1.

P Granules Protect RNA Interference Genes from Silencing by piRNAs.

Ouyang JPT, Folkmann A, Bernard L, Lee CY, Seroussi U, Charlesworth AG, Claycomb JM, Seydoux G.

Dev Cell. 2019 Sep 23;50(6):716-728.e6. doi: 10.1016/j.devcel.2019.07.026. Epub 2019 Aug 8.

PMID:
31402283
2.

Todos Santos small RNA symposium.

Winkenbach LP, Doser R, Reed KJ, Pasquinelli AE, Phillips CM, Claycomb JM.

RNA Biol. 2019 Nov;16(11):1526-1530. doi: 10.1080/15476286.2019.1649586. Epub 2019 Aug 9.

PMID:
31397621
3.

Germ Granules Govern Small RNA Inheritance.

Lev I, Toker IA, Mor Y, Nitzan A, Weintraub G, Antonova O, Bhonkar O, Ben Shushan I, Seroussi U, Claycomb JM, Anava S, Gingold H, Zaidel-Bar R, Rechavi O.

Curr Biol. 2019 Sep 9;29(17):2880-2891.e4. doi: 10.1016/j.cub.2019.07.054. Epub 2019 Aug 1.

4.

Genome structure predicts modular transcriptome responses to genetic and environmental conditions.

Mark S, Weiss J, Sharma E, Liu T, Wang W, Claycomb JM, Cutter AD.

Mol Ecol. 2019 Aug;28(16):3681-3697. doi: 10.1111/mec.15185. Epub 2019 Aug 5.

PMID:
31325381
5.

Next-Gen Learning: The C. elegans Approach.

Charlesworth AG, Seroussi U, Claycomb JM.

Cell. 2019 Jun 13;177(7):1674-1676. doi: 10.1016/j.cell.2019.05.039.

PMID:
31199913
6.

Secretion of an Argonaute protein by a parasitic nematode and the evolution of its siRNA guides.

Chow FW, Koutsovoulos G, Ovando-Vázquez C, Neophytou K, Bermúdez-Barrientos JR, Laetsch DR, Robertson E, Kumar S, Claycomb JM, Blaxter M, Abreu-Goodger C, Buck AH.

Nucleic Acids Res. 2019 Apr 23;47(7):3594-3606. doi: 10.1093/nar/gkz142.

7.

The TRIM-NHL protein NHL-2 is a co-factor in the nuclear and somatic RNAi pathways in C. elegans.

Davis GM, Tu S, Anderson JW, Colson RN, Gunzburg MJ, Francisco MA, Ray D, Shrubsole SP, Sobotka JA, Seroussi U, Lao RX, Maity T, Wu MZ, McJunkin K, Morris QD, Hughes TR, Wilce JA, Claycomb JM, Weng Z, Boag PR.

Elife. 2018 Dec 21;7. pii: e35478. doi: 10.7554/eLife.35478.

8.

Post-transcriptional regulation of gene expression.

Lipshitz HD, Claycomb JM, Smibert CA.

Methods. 2017 Aug 15;126:1-2. doi: 10.1016/j.ymeth.2017.08.007. No abstract available.

PMID:
28867174
9.

The Conserved Intron Binding Protein EMB-4 Plays Differential Roles in Germline Small RNA Pathways of C. elegans.

Tyc KM, Nabih A, Wu MZ, Wedeles CJ, Sobotka JA, Claycomb JM.

Dev Cell. 2017 Aug 7;42(3):256-270.e6. doi: 10.1016/j.devcel.2017.07.003.

10.

The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription.

Akay A, Di Domenico T, Suen KM, Nabih A, Parada GE, Larance M, Medhi R, Berkyurek AC, Zhang X, Wedeles CJ, Rudolph KLM, Engelhardt J, Hemberg M, Ma P, Lamond AI, Claycomb JM, Miska EA.

Dev Cell. 2017 Aug 7;42(3):241-255.e6. doi: 10.1016/j.devcel.2017.07.002.

11.

Examining the intersection between splicing, nuclear export and small RNA pathways.

Nabih A, Sobotka JA, Wu MZ, Wedeles CJ, Claycomb JM.

Biochim Biophys Acta Gen Subj. 2017 Nov;1861(11 Pt B):2948-2955. doi: 10.1016/j.bbagen.2017.05.027. Epub 2017 May 31. Review.

PMID:
28578161
12.

The Smaug RNA-Binding Protein Is Essential for microRNA Synthesis During the Drosophila Maternal-to-Zygotic Transition.

Luo H, Li X, Claycomb JM, Lipshitz HD.

G3 (Bethesda). 2016 Nov 8;6(11):3541-3551. doi: 10.1534/g3.116.034199.

13.

Comparative genomic analysis of upstream miRNA regulatory motifs in Caenorhabditis.

Jovelin R, Krizus A, Taghizada B, Gray JC, Phillips PC, Claycomb JM, Cutter AD.

RNA. 2016 Jul;22(7):968-78. doi: 10.1261/rna.055392.115. Epub 2016 May 2.

14.

Comparative functional characterization of the CSR-1 22G-RNA pathway in Caenorhabditis nematodes.

Tu S, Wu MZ, Wang J, Cutter AD, Weng Z, Claycomb JM.

Nucleic Acids Res. 2015 Jan;43(1):208-24. doi: 10.1093/nar/gku1308. Epub 2014 Dec 15.

15.

From early lessons to new frontiers: the worm as a treasure trove of small RNA biology.

Youngman EM, Claycomb JM.

Front Genet. 2014 Nov 27;5:416. doi: 10.3389/fgene.2014.00416. eCollection 2014. Review.

16.

Silent no more: Endogenous small RNA pathways promote gene expression.

Wedeles CJ, Wu MZ, Claycomb JM.

Worm. 2014 Apr 2;3:e28641. doi: 10.4161/worm.28641. eCollection 2014.

17.

Ancient endo-siRNA pathways reveal new tricks.

Claycomb JM.

Curr Biol. 2014 Aug 4;24(15):R703-15. doi: 10.1016/j.cub.2014.06.009. Review.

18.

Epstein-Barr virus EBNA1 protein regulates viral latency through effects on let-7 microRNA and dicer.

Mansouri S, Pan Q, Blencowe BJ, Claycomb JM, Frappier L.

J Virol. 2014 Oct;88(19):11166-77. doi: 10.1128/JVI.01785-14. Epub 2014 Jul 16.

19.

Emerging from the clouds: Vasa helicase sheds light on piRNA amplification.

Claycomb JM.

Dev Cell. 2014 Jun 23;29(6):632-4. doi: 10.1016/j.devcel.2014.06.009.

20.

Protection of germline gene expression by the C. elegans Argonaute CSR-1.

Wedeles CJ, Wu MZ, Claycomb JM.

Dev Cell. 2013 Dec 23;27(6):664-71.

21.

A multitasking Argonaute: exploring the many facets of C. elegans CSR-1.

Wedeles CJ, Wu MZ, Claycomb JM.

Chromosome Res. 2013 Dec;21(6-7):573-86. doi: 10.1007/s10577-013-9383-7. Review.

PMID:
24178449
22.

Caenorhabditis elegans small RNA pathways make their mark on chromatin.

Claycomb JM.

DNA Cell Biol. 2012 Oct;31 Suppl 1:S17-33. doi: 10.1089/dna.2012.1611. Review.

PMID:
23046453
23.

Cloning Argonaute-associated small RNAs from Caenorhabditis elegans.

Gu W, Claycomb JM, Batista PJ, Mello CC, Conte D.

Methods Mol Biol. 2011;725:251-80. doi: 10.1007/978-1-61779-046-1_17.

PMID:
21528459
24.

Argonautes ALG-3 and ALG-4 are required for spermatogenesis-specific 26G-RNAs and thermotolerant sperm in Caenorhabditis elegans.

Conine CC, Batista PJ, Gu W, Claycomb JM, Chaves DA, Shirayama M, Mello CC.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3588-93. doi: 10.1073/pnas.0911685107. Epub 2010 Feb 4.

25.

Sequential rounds of RNA-dependent RNA transcription drive endogenous small-RNA biogenesis in the ERGO-1/Argonaute pathway.

Vasale JJ, Gu W, Thivierge C, Batista PJ, Claycomb JM, Youngman EM, Duchaine TF, Mello CC, Conte D Jr.

Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3582-7. doi: 10.1073/pnas.0911908107. Epub 2010 Feb 2.

26.

CDE-1 affects chromosome segregation through uridylation of CSR-1-bound siRNAs.

van Wolfswinkel JC, Claycomb JM, Batista PJ, Mello CC, Berezikov E, Ketting RF.

Cell. 2009 Oct 2;139(1):135-48. doi: 10.1016/j.cell.2009.09.012.

27.

The Argonaute CSR-1 and its 22G-RNA cofactors are required for holocentric chromosome segregation.

Claycomb JM, Batista PJ, Pang KM, Gu W, Vasale JJ, van Wolfswinkel JC, Chaves DA, Shirayama M, Mitani S, Ketting RF, Conte D Jr, Mello CC.

Cell. 2009 Oct 2;139(1):123-34. doi: 10.1016/j.cell.2009.09.014.

28.

Distinct argonaute-mediated 22G-RNA pathways direct genome surveillance in the C. elegans germline.

Gu W, Shirayama M, Conte D Jr, Vasale J, Batista PJ, Claycomb JM, Moresco JJ, Youngman EM, Keys J, Stoltz MJ, Chen CC, Chaves DA, Duan S, Kasschau KD, Fahlgren N, Yates JR 3rd, Mitani S, Carrington JC, Mello CC.

Mol Cell. 2009 Oct 23;36(2):231-44. doi: 10.1016/j.molcel.2009.09.020. Epub 2009 Oct 1.

29.

PRG-1 and 21U-RNAs interact to form the piRNA complex required for fertility in C. elegans.

Batista PJ, Ruby JG, Claycomb JM, Chiang R, Fahlgren N, Kasschau KD, Chaves DA, Gu W, Vasale JJ, Duan S, Conte D Jr, Luo S, Schroth GP, Carrington JC, Bartel DP, Mello CC.

Mol Cell. 2008 Jul 11;31(1):67-78. doi: 10.1016/j.molcel.2008.06.002. Epub 2008 Jun 19.

30.

Developmental gene amplification: insights into DNA replication and gene expression.

Claycomb JM, Orr-Weaver TL.

Trends Genet. 2005 Mar;21(3):149-62. Review.

PMID:
15734574
31.

Gene amplification as a developmental strategy: isolation of two developmental amplicons in Drosophila.

Claycomb JM, Benasutti M, Bosco G, Fenger DD, Orr-Weaver TL.

Dev Cell. 2004 Jan;6(1):145-55.

32.

Visualization of replication initiation and elongation in Drosophila.

Claycomb JM, MacAlpine DM, Evans JG, Bell SP, Orr-Weaver TL.

J Cell Biol. 2002 Oct 28;159(2):225-36. Epub 2002 Oct 28.

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