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A review of recent research on Theileria parva: Implications for the infection and treatment vaccination method for control of East Coast fever.

Bishop RP, Odongo D, Ahmed J, Mwamuye M, Fry LM, Knowles DP, Nanteza A, Lubega G, Gwakisa P, Clausen PH, Obara I.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:56-67. doi: 10.1111/tbed.13325.


Towards wider and more efficient deployment of live vaccines for control of Theileria parva and Theileria annulata infections in cattle in eastern, central and northern Africa.

Obara I, Ahmed J, Bishop R, Clausen PH.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:5-7. doi: 10.1111/tbed.13359. No abstract available.


Serum-free in vitro cultivation of Theileria annulata and Theileria parva schizont-infected lymphocytes.

Zweygarth E, Nijhof AM, Knorr S, Ahmed JS, Al-Hosary ATA, Obara I, Bishop RP, Josemans AI, Clausen PH.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:35-39. doi: 10.1111/tbed.13348.


Antigen gene and variable number tandem repeat (VNTR) diversity in Theileria parva parasites from Ankole cattle in south-western Uganda: Evidence for conservation in antigen gene sequences combined with extensive polymorphism at VNTR loci.

Nanteza A, Obara I, Kasaija P, Mwega E, Kabi F, Salih DA, Njahira M, Njuguna J, Odongo D, Bishop RP, Skilton RA, Ahmed J, Clausen PH, Lubega GW.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:99-107. doi: 10.1111/tbed.13311.


The protection afforded to cattle immunized with Theileria annulata infected cell line is enhanced by subunit vaccine candidate TaSP.

Saaid AA, Salih DA, Elhaj LM, Abdalla MA, Baumann M, Obara I, Ahmed JS, Clausen PH, El Hussein ARM.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:26-34. doi: 10.1111/tbed.13374.


Monitoring vaccinated cattle for induction and longevity of persistent tick-transmissible infection: Implications for wider deployment of live vaccination against East Coast fever in Tanzania.

Gwakisa P, Kindoro F, Mwega E, Kimera S, Obara I, Ahmed J, Clausen PH, Bishop R.

Transbound Emerg Dis. 2020 Mar;67 Suppl 1:79-87. doi: 10.1111/tbed.13405.


Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering.

Ahrenfeldt J, Waisi M, Loft IC, Clausen PTLC, Allesøe R, Szarvas J, Hendriksen RS, Aarestrup FM, Lund O.

Sci Rep. 2020 Feb 20;10(1):3033. doi: 10.1038/s41598-020-59292-w.


Relative Distribution, Diversity, and Bloodmeal Sources of Mosquitoes and Known Vectors of Rift Valley Fever Phlebovirus in Three Differing Ecosystems in Bura, Tana River County, Kenya.

Mbotha D, Hoppenheit A, Lindahl J, Bett B, Grace D, Lutomiah J, Pieper L, Kairu-Wanyoike S, Clausen PH.

Vector Borne Zoonotic Dis. 2020 Jan 28. doi: 10.1089/vbz.2019.2503. [Epub ahead of print]


Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks.

Aytan-Aktug D, Clausen PTLC, Bortolaia V, Aarestrup FM, Lund O.

mSystems. 2020 Jan 21;5(1). pii: e00774-19. doi: 10.1128/mSystems.00774-19.


Biocidal spray product exposure: Measured gas, particle, and surface concentrations compared with spray model simulations.

Clausen PA, Mørck TA, Jensen ACØ, Schou TW, Kofoed-Sørensen V, Koponen IK, Frederiksen M, Detmer A, Fink M, Nørgaard AW, Wolkoff P.

J Occup Environ Hyg. 2020 Jan;17(1):15-29. doi: 10.1080/15459624.2019.1689247. Epub 2019 Dec 9.


Improved Resistance Prediction in Mycobacterium tuberculosis by Better Handling of Insertions and Deletions, Premature Stop Codons, and Filtering of Non-informative Sites.

Johnsen CH, Clausen PTLC, Aarestrup FM, Lund O.

Front Microbiol. 2019 Oct 31;10:2464. doi: 10.3389/fmicb.2019.02464. eCollection 2019.


Thermogravimetry and Mass Spectrometry of Extractable Organics from Manufactured Nanomaterials for Identification of Potential Coating Components.

Clausen PA, Kofoed-Sørensen V, Nørgaard AW, Sahlgren NM, Jensen KA.

Materials (Basel). 2019 Nov 6;12(22). pii: E3657. doi: 10.3390/ma12223657.


Influence of Airborne Particles' Chemical Composition on SVOC Uptake from PVC Flooring-Time-Resolved Analysis with Aerosol Mass Spectrometry.

Eriksson AC, Andersen C, Krais AM, Nøjgaard JK, Clausen PA, Gudmundsson A, Wierzbicka A, Pagels J.

Environ Sci Technol. 2020 Jan 7;54(1):85-91. doi: 10.1021/acs.est.9b04159. Epub 2019 Dec 16.


Head to head: the case for fighting behaviour in Megaloceros giganteus using finite-element analysis.

Klinkhamer AJ, Woodley N, Neenan JM, Parr WCH, Clausen P, Sánchez-Villagra MR, Sansalone G, Lister AM, Wroe S.

Proc Biol Sci. 2019 Oct 9;286(1912):20191873. doi: 10.1098/rspb.2019.1873. Epub 2019 Oct 9.


Molecular detection of tick-borne pathogens in bovine blood and ticks from Khentii, Mongolia.

Fischer T, Myalkhaa M, Krücken J, Battsetseg G, Batsukh Z, Baumann MPO, Clausen PH, Nijhof AM.

Transbound Emerg Dis. 2019 Aug 28. doi: 10.1111/tbed.13315. [Epub ahead of print]


Aurix Gel Is an Effective Intervention for Chronic Diabetic Foot Ulcers: A Pragmatic Randomized Controlled Trial.

Gude W, Hagan D, Abood F, Clausen P.

Adv Skin Wound Care. 2019 Sep;32(9):416-426. doi: 10.1097/01.ASW.0000577140.19174.9e.


Insecticide resistance in stable flies (Stomoxys calcitrans) on dairy farms in Germany.

Reissert-Oppermann S, Bauer B, Steuber S, Clausen PH.

Parasitol Res. 2019 Sep;118(9):2499-2507. doi: 10.1007/s00436-019-06400-z. Epub 2019 Jul 30.


Airport emission particles: exposure characterization and toxicity following intratracheal instillation in mice.

Bendtsen KM, Brostrøm A, Koivisto AJ, Koponen I, Berthing T, Bertram N, Kling KI, Dal Maso M, Kangasniemi O, Poikkimäki M, Loeschner K, Clausen PA, Wolff H, Jensen KA, Saber AT, Vogel U.

Part Fibre Toxicol. 2019 Jun 11;16(1):23. doi: 10.1186/s12989-019-0305-5.


First report of a Hypoderma diana infestation in alpaca (Vicugna pacos) in Germany.

Venjakob PL, Vogel C, Clausen PH, Nijhof AM.

Parasitol Res. 2019 Jun;118(6):1963-1966. doi: 10.1007/s00436-019-06333-7. Epub 2019 May 8.


Exposure to Air Pollution inside Electric and Diesel-Powered Passenger Trains.

Andersen MHG, Johannesson S, Fonseca AS, Clausen PA, Saber AT, Roursgaard M, Loeschner K, Koponen IK, Loft S, Vogel U, Møller P.

Environ Sci Technol. 2019 Apr 16;53(8):4579-4587. doi: 10.1021/acs.est.8b06980. Epub 2019 Apr 5.


LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences.

Hasman H, Clausen PTLC, Kaya H, Hansen F, Knudsen JD, Wang M, Holzknecht BJ, Samulioniené J, Røder BL, Frimodt-Møller N, Lund O, Hammerum AM.

J Antimicrob Chemother. 2019 Jun 1;74(6):1473-1476. doi: 10.1093/jac/dkz092.


Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage.

Hendriksen RS, Munk P, Njage P, van Bunnik B, McNally L, Lukjancenko O, Röder T, Nieuwenhuijse D, Pedersen SK, Kjeldgaard J, Kaas RS, Clausen PTLC, Vogt JK, Leekitcharoenphon P, van de Schans MGM, Zuidema T, de Roda Husman AM, Rasmussen S, Petersen B; Global Sewage Surveillance project consortium, Amid C, Cochrane G, Sicheritz-Ponten T, Schmitt H, Alvarez JRM, Aidara-Kane A, Pamp SJ, Lund O, Hald T, Woolhouse M, Koopmans MP, Vigre H, Petersen TN, Aarestrup FM.

Nat Commun. 2019 Mar 8;10(1):1124. doi: 10.1038/s41467-019-08853-3.


Development of a deep neural network for automated electromyographic pattern classification.

Akhundov R, Saxby DJ, Edwards S, Snodgrass S, Clausen P, Diamond LE.

J Exp Biol. 2019 Mar 4;222(Pt 5). pii: jeb198101. doi: 10.1242/jeb.198101.


How rational drug use reduces trypanosome infections in cattle in chemo-resistance hot-spot villages of northern Togo.

Tchamdja E, Clausen PH, Kulo AE, Batawui K, Bauer B, Den Abbeele JV, Delespaux V, Hoppenheit A.

Acta Trop. 2019 Feb;190:159-165. doi: 10.1016/j.actatropica.2018.11.023. Epub 2018 Nov 19.


Experimental screening studies on rabies virus transmission and oral rabies vaccination of the Greater Kudu (Tragelaphus strepsiceros).

Hassel R, Vos A, Clausen P, Moore S, van der Westhuizen J, Khaiseb S, Kabajani J, Pfaff F, Höper D, Hundt B, Jago M, Bruwer F, Lindeque P, Finke S, Freuling CM, Müller T.

Sci Rep. 2018 Nov 9;8(1):16599. doi: 10.1038/s41598-018-34985-5.


Improved ontology for eukaryotic single-exon coding sequences in biological databases.

Jorquera R, González C, Clausen P, Petersen B, Holmes DS.

Database (Oxford). 2018 Jan 1;2018:1-6. doi: 10.1093/database/bay089.


Rapid and precise alignment of raw reads against redundant databases with KMA.

Clausen PTLC, Aarestrup FM, Lund O.

BMC Bioinformatics. 2018 Aug 29;19(1):307. doi: 10.1186/s12859-018-2336-6.


Epidemiological study on tropical theileriosis (Theileria annulata infection) in the Egyptian Oases with special reference to the molecular characterization of Theileria spp.

Al-Hosary A, Ahmed L, Ahmed J, Nijhof A, Clausen PH.

Ticks Tick Borne Dis. 2018 Sep;9(6):1489-1493. doi: 10.1016/j.ttbdis.2018.07.008. Epub 2018 Jul 20.


Assessment of polycyclic aromatic hydrocarbon exposure, lung function, systemic inflammation, and genotoxicity in peripheral blood mononuclear cells from firefighters before and after a work shift.

Andersen MHG, Saber AT, Pedersen JE, Pedersen PB, Clausen PA, Løhr M, Kermanizadeh A, Loft S, Ebbehøj NE, Hansen ÅM, Kalevi Koponen I, Nørskov EC, Vogel U, Møller P.

Environ Mol Mutagen. 2018 Jul;59(6):539-548. doi: 10.1002/em.22193. Epub 2018 May 15.


Established and novel approaches for teaching and learning of veterinary parasitology in Berlin.

Clausen PH, Stelzer S, Nijhof A, Krücken J, von Samson-Himmelstjerna G.

Vet Parasitol. 2018 Mar 15;252:58-61. doi: 10.1016/j.vetpar.2018.01.028. Epub 2018 Jan 31.


Dermal uptake and percutaneous penetration of organophosphate esters in a human skin ex vivo model.

Frederiksen M, Stapleton HM, Vorkamp K, Webster TF, Jensen NM, Sørensen JA, Nielsen F, Knudsen LE, Sørensen LS, Clausen PA, Nielsen JB.

Chemosphere. 2018 Apr;197:185-192. doi: 10.1016/j.chemosphere.2018.01.032. Epub 2018 Jan 10.


Aberrant use and poor quality of trypanocides: a risk for drug resistance in south western Ethiopia.

Tekle T, Terefe G, Cherenet T, Ashenafi H, Akoda KG, Teko-Agbo A, Van Den Abbeele J, Gari G, Clausen PH, Hoppenheit A, Mattioli RC, Peter R, Marcotty T, Cecchi G, Delespaux V.

BMC Vet Res. 2018 Jan 5;14(1):4. doi: 10.1186/s12917-017-1327-6.


Evaluation of a semi-automated in vitro feeding system for Dermacentor reticulatus and Ixodes ricinus adults.

Böhme B, Krull C, Clausen PH, Nijhof AM.

Parasitol Res. 2018 Feb;117(2):565-570. doi: 10.1007/s00436-017-5648-y. Epub 2018 Jan 3.


Baiting studies on oral vaccination of the greater kudu (Tragelaphus strepsiceros) against rabies.

Hassel R, Ortmann S, Clausen P, Jago M, Bruwer F, Lindeque P, Freuling C, Vos A, Müller T.

Eur. J. Wildl. Res.. 2018;64(6):62. doi: 10.1007/s10344-018-1220-z. Epub 2018 Oct 9.


Resistance to trypanocidal drugs in cattle populations of Zambezia Province, Mozambique.

Mulandane FC, Fafetine J, Van Den Abbeele J, Clausen PH, Hoppenheit A, Cecchi G, Oosthuizen M, Delespaux V, Neves L.

Parasitol Res. 2018 Feb;117(2):429-436. doi: 10.1007/s00436-017-5718-1. Epub 2017 Dec 20.


Molecular detection of tick-borne pathogens in cattle from Southwestern Ethiopia.

Hailemariam Z, Krücken J, Baumann M, Ahmed JS, Clausen PH, Nijhof AM.

PLoS One. 2017 Nov 20;12(11):e0188248. doi: 10.1371/journal.pone.0188248. eCollection 2017.


Molecular identification of tick-borne pathogens infecting cattle in Mymensingh district of Bangladesh reveals emerging species of Anaplasma and Babesia.

Roy BC, Krücken J, Ahmed JS, Majumder S, Baumann MP, Clausen PH, Nijhof AM.

Transbound Emerg Dis. 2018 Apr;65(2):e231-e242. doi: 10.1111/tbed.12745. Epub 2017 Nov 8.


Association between polycyclic aromatic hydrocarbon exposure and peripheral blood mononuclear cell DNA damage in human volunteers during fire extinction exercises.

Andersen MHG, Saber AT, Clausen PA, Pedersen JE, Løhr M, Kermanizadeh A, Loft S, Ebbehøj N, Hansen ÅM, Pedersen PB, Koponen IK, Nørskov EC, Møller P, Vogel U.

Mutagenesis. 2018 Feb 24;33(1):105-115. doi: 10.1093/mutage/gex021.


Cardiovascular health effects following exposure of human volunteers during fire extinction exercises.

Andersen MHG, Saber AT, Pedersen PB, Loft S, Hansen ÅM, Koponen IK, Pedersen JE, Ebbehøj N, Nørskov EC, Clausen PA, Garde AH, Vogel U, Møller P.

Environ Health. 2017 Sep 6;16(1):96. doi: 10.1186/s12940-017-0303-8.


Inter-epidemic Rift Valley fever virus seroconversions in an irrigation scheme in Bura, south-east Kenya.

Mbotha D, Bett B, Kairu-Wanyoike S, Grace D, Kihara A, Wainaina M, Hoppenheit A, Clausen PH, Lindahl J.

Transbound Emerg Dis. 2018 Feb;65(1):e55-e62. doi: 10.1111/tbed.12674. Epub 2017 Jul 14.


Bottleneck Accumulation of Hybrid Magnetoelastic Bosons.

Bozhko DA, Clausen P, Melkov GA, L'vov VS, Pomyalov A, Vasyuchka VI, Chumak AV, Hillebrands B, Serga AA.

Phys Rev Lett. 2017 Jun 9;118(23):237201. doi: 10.1103/PhysRevLett.118.237201. Epub 2017 Jun 8.


The impact of insecticide-treated material to reduce flies among pork outlets in Kampala, Uganda.

Heilmann M, Roesel K, Grace D, Bauer B, Clausen PH.

Parasitol Res. 2017 Jun;116(6):1617-1626. doi: 10.1007/s00436-017-5450-x. Epub 2017 May 1.


Cattle breeding, trypanosomosis prevalence and drug resistance in Northern Togo.

Tchamdja E, Kulo AE, Vitouley HS, Batawui K, Bankolé AA, Adomefa K, Cecchi G, Hoppenheit A, Clausen PH, De Deken R, Van Den Abbeele J, Marcotty T, Delespaux V.

Vet Parasitol. 2017 Mar 15;236:86-92. doi: 10.1016/j.vetpar.2017.02.008. Epub 2017 Feb 14.


The remarkable convergence of skull shape in crocodilians and toothed whales.

McCurry MR, Evans AR, Fitzgerald EM, Adams JW, Clausen PD, McHenry CR.

Proc Biol Sci. 2017 Mar 15;284(1850). pii: 20162348. doi: 10.1098/rspb.2016.2348.


Sawfishes stealth revealed using computational fluid dynamics.

Bradney DR, Davidson A, Evans SP, Wueringer BE, Morgan DL, Clausen PD.

J Fish Biol. 2017 Apr;90(4):1584-1596. doi: 10.1111/jfb.13255. Epub 2017 Feb 27.


Toxocara vitulorum infection in German beef cattle.

Venjakob PL, Thiele G, Clausen PH, Nijhof AM.

Parasitol Res. 2017 Mar;116(3):1085-1088. doi: 10.1007/s00436-017-5393-2. Epub 2017 Feb 2.


Optimization of an artificial tick feeding assay for Dermacentor reticulatus.

Krull C, Böhme B, Clausen PH, Nijhof AM.

Parasit Vectors. 2017 Feb 2;10(1):60. doi: 10.1186/s13071-017-2000-4.


Predictors of Patterns of Alcohol-Related Blackouts Over Time in Youth From the Collaborative Study of the Genetics of Alcoholism: The Roles of Genetics and Cannabis.

Schuckit MA, Smith TL, Shafir A, Clausen P, Danko G, Gonçalves PD, Anthenelli RM, Chan G, Kuperman S, Hesselbrock M, Hesselbrock V, Kramer J, Bucholz KK.

J Stud Alcohol Drugs. 2017 Jan;78(1):39-48.


First Report of the Occurrence of Trichinella-Specific Antibodies in Domestic Pigs in Central and Eastern Uganda.

Roesel K, Nöckler K, Baumann MP, Fries R, Dione MM, Clausen PH, Grace D.

PLoS One. 2016 Nov 21;11(11):e0166258. doi: 10.1371/journal.pone.0166258. eCollection 2016.


Biodistribution of Carbon Nanotubes in Animal Models.

Jacobsen NR, Møller P, Clausen PA, Saber AT, Micheletti C, Jensen KA, Wallin H, Vogel U.

Basic Clin Pharmacol Toxicol. 2017 Sep;121 Suppl 3:30-43. doi: 10.1111/bcpt.12705. Epub 2017 Feb 22. Review.

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