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Items: 21

1.

Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array.

Higgins EE, Clarke WE, Howell EC, Armstrong SJ, Parkin IAP.

G3 (Bethesda). 2018 Jul 31;8(8):2673-2683. doi: 10.1534/g3.118.200118.

2.

taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.

Corvelo A, Clarke WE, Robine N, Zody MC.

Genome Res. 2018 May;28(5):751-758. doi: 10.1101/gr.225276.117. Epub 2018 Mar 27.

3.

The developmental transcriptome atlas of the biofuel crop Camelina sativa.

Kagale S, Nixon J, Khedikar Y, Pasha A, Provart NJ, Clarke WE, Bollina V, Robinson SJ, Coutu C, Hegedus DD, Sharpe AG, Parkin IA.

Plant J. 2016 Dec;88(5):879-894. doi: 10.1111/tpj.13302.

4.

A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.

Clarke WE, Higgins EE, Plieske J, Wieseke R, Sidebottom C, Khedikar Y, Batley J, Edwards D, Meng J, Li R, Lawley CT, Pauquet J, Laga B, Cheung W, Iniguez-Luy F, Dyrszka E, Rae S, Stich B, Snowdon RJ, Sharpe AG, Ganal MW, Parkin IA.

Theor Appl Genet. 2016 Oct;129(10):1887-99. doi: 10.1007/s00122-016-2746-7. Epub 2016 Jun 30.

5.

The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp.

Rolfe SA, Strelkov SE, Links MG, Clarke WE, Robinson SJ, Djavaheri M, Malinowski R, Haddadi P, Kagale S, Parkin IA, Taheri A, Borhan MH.

BMC Genomics. 2016 Mar 31;17:272. doi: 10.1186/s12864-016-2597-2.

6.

Analysis of Genotyping-by-Sequencing (GBS) Data.

Kagale S, Koh C, Clarke WE, Bollina V, Parkin IA, Sharpe AG.

Methods Mol Biol. 2016;1374:269-84. doi: 10.1007/978-1-4939-3167-5_15.

PMID:
26519412
7.

Single-nucleotide polymorphism identification and genotyping in Camelina sativa.

Singh R, Bollina V, Higgins EE, Clarke WE, Eynck C, Sidebottom C, Gugel R, Snowdon R, Parkin IA.

Mol Breed. 2015;35:35. Epub 2015 Jan 21.

8.

Polyploid evolution of the Brassicaceae during the Cenozoic era.

Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA.

Plant Cell. 2014 Jul;26(7):2777-91. doi: 10.1105/tpc.114.126391. Epub 2014 Jul 17.

9.

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea.

Parkin IA, Koh C, Tang H, Robinson SJ, Kagale S, Clarke WE, Town CD, Nixon J, Krishnakumar V, Bidwell SL, Denoeud F, Belcram H, Links MG, Just J, Clarke C, Bender T, Huebert T, Mason AS, Pires JC, Barker G, Moore J, Walley PG, Manoli S, Batley J, Edwards D, Nelson MN, Wang X, Paterson AH, King G, Bancroft I, Chalhoub B, Sharpe AG.

Genome Biol. 2014 Jun 10;15(6):R77. doi: 10.1186/gb-2014-15-6-r77.

10.

The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure.

Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA.

Nat Commun. 2014 Apr 23;5:3706. doi: 10.1038/ncomms4706.

11.

Genomic DNA enrichment using sequence capture microarrays: a novel approach to discover sequence nucleotide polymorphisms (SNP) in Brassica napus L.

Clarke WE, Parkin IA, Gajardo HA, Gerhardt DJ, Higgins E, Sidebottom C, Sharpe AG, Snowdon RJ, Federico ML, Iniguez-Luy FL.

PLoS One. 2013 Dec 3;8(12):e81992. doi: 10.1371/journal.pone.0081992. eCollection 2013.

12.

Ancient orphan crop joins modern era: gene-based SNP discovery and mapping in lentil.

Sharpe AG, Ramsay L, Sanderson LA, Fedoruk MJ, Clarke WE, Li R, Kagale S, Vijayan P, Vandenberg A, Bett KE.

BMC Genomics. 2013 Mar 18;14:192. doi: 10.1186/1471-2164-14-192.

13.

Monolignol biosynthesis is associated with resistance to Sclerotinia sclerotiorum in Camelina sativa.

Eynck C, S├ęguin-Swartz G, Clarke WE, Parkin IA.

Mol Plant Pathol. 2012 Oct;13(8):887-99. doi: 10.1111/j.1364-3703.2012.00798.x. Epub 2012 Apr 8.

PMID:
22487550
14.

De novo sequence assembly of Albugo candida reveals a small genome relative to other biotrophic oomycetes.

Links MG, Holub E, Jiang RH, Sharpe AG, Hegedus D, Beynon E, Sillito D, Clarke WE, Uzuhashi S, Borhan MH.

BMC Genomics. 2011 Oct 13;12:503. doi: 10.1186/1471-2164-12-503.

15.

Towards unambiguous transcript mapping in the allotetraploid Brassica napus.

Parkin IA, Clarke WE, Sidebottom C, Zhang W, Robinson SJ, Links MG, Karcz S, Higgins EE, Fobert P, Sharpe AG.

Genome. 2010 Nov;53(11):929-38. doi: 10.1139/G10-053.

PMID:
21076508
16.

An archived activation tagged population of Arabidopsis thaliana to facilitate forward genetics approaches.

Robinson SJ, Tang LH, Mooney BA, McKay SJ, Clarke WE, Links MG, Karcz S, Regan S, Wu YY, Gruber MY, Cui D, Yu M, Parkin IA.

BMC Plant Biol. 2009 Jul 31;9:101. doi: 10.1186/1471-2229-9-101.

17.
19.

Comparison of sotalol hydrochloride and methyldopa in essential hypertension.

Gajendragadkar SV, Clarke WE.

J Int Med Res. 1977;5(4):233-5.

PMID:
881095
20.

Treatment of thyrotoxic heart diseases by methyl thiouracil.

CLARKE WE.

Br Med J. 1948 Mar 27;1(4551):597-9. No abstract available.

21.

Dermatomyositis.

Clarke WE.

Proc R Soc Med. 1947 Jun;40(8):475-6. No abstract available.

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