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Items: 1 to 50 of 109

1.

Photosensitised Multiheme Cytochromes as Light-Driven Molecular Wires and Resistors.

van Wonderen JH, Li D, Piper SEH, Lau CY, Jenner LP, Hall CR, Clarke TA, Watmough NJ, Butt JN.

Chembiochem. 2018 Oct 18;19(20):2206-2215. doi: 10.1002/cbic.201800313. Epub 2018 Sep 13.

PMID:
30019519
2.

Extracellular reduction of solid electron acceptors by Shewanella oneidensis.

Beblawy S, Bursac T, Paquete C, Louro R, Clarke TA, Gescher J.

Mol Microbiol. 2018 Sep;109(5):571-583. doi: 10.1111/mmi.14067. Epub 2018 Jul 31. Review.

PMID:
29995975
3.

Structural modeling of an outer membrane electron conduit from a metal-reducing bacterium suggests electron transfer via periplasmic redox partners.

Edwards MJ, White GF, Lockwood CW, Lawes MC, Martel A, Harris G, Scott DJ, Richardson DJ, Butt JN, Clarke TA.

J Biol Chem. 2018 May 25;293(21):8103-8112. doi: 10.1074/jbc.RA118.001850. Epub 2018 Apr 10.

4.

Exploring the Role of Wealth and Religion on the Ownership of Captive Lemurs in Madagascar Using Qualitative and Quantitative Data.

Reuter KE, Clarke TA, LaFleur M, Ratsimbazafy J, Holiniaina Kjeldgaard F, Rodriguez L, Schaeffer T, Schaefer MS.

Folia Primatol (Basel). 2018;89(1):81-96. doi: 10.1159/000477400. Epub 2018 Apr 10.

PMID:
29631263
5.

Electron transfer process in microbial electrochemical technologies: The role of cell-surface exposed conductive proteins.

Costa NL, Clarke TA, Philipp LA, Gescher J, Louro RO, Paquete CM.

Bioresour Technol. 2018 May;255:308-317. doi: 10.1016/j.biortech.2018.01.133. Epub 2018 Jan 31. Review.

PMID:
29444758
6.

The metabolic impact of extracellular nitrite on aerobic metabolism of Paracoccus denitrificans.

Hartop KR, Sullivan MJ, Giannopoulos G, Gates AJ, Bond PL, Yuan Z, Clarke TA, Rowley G, Richardson DJ.

Water Res. 2017 Apr 15;113:207-214. doi: 10.1016/j.watres.2017.02.011. Epub 2017 Feb 7.

7.

Rapid Decrease in Populations of Wild Ring-Tailed Lemurs (Lemur catta) in Madagascar.

LaFleur M, Clarke TA, Reuter K, Schaeffer T.

Folia Primatol (Basel). 2016;87(5):320-330. doi: 10.1159/000455121. Epub 2017 Jan 13.

8.

Endangered species: Illegal lemur trade grows in Madagascar.

Reuter KE, LaFleur M, Clarke TA.

Nature. 2017 Jan 11;541(7636):157. doi: 10.1038/541157d. No abstract available.

PMID:
28079085
9.

Photoreduction of Shewanella oneidensis Extracellular Cytochromes by Organic Chromophores and Dye-Sensitized TiO2.

Ainsworth EV, Lockwood CW, White GF, Hwang ET, Sakai T, Gross MA, Richardson DJ, Clarke TA, Jeuken LJ, Reisner E, Butt JN.

Chembiochem. 2016 Dec 14;17(24):2324-2333. doi: 10.1002/cbic.201600339. Epub 2016 Nov 8.

10.

Mechanisms of Bacterial Extracellular Electron Exchange.

White GF, Edwards MJ, Gomez-Perez L, Richardson DJ, Butt JN, Clarke TA.

Adv Microb Physiol. 2016;68:87-138. doi: 10.1016/bs.ampbs.2016.02.002. Epub 2016 Mar 24. Review.

PMID:
27134022
11.

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.

Edwards MJ, White GF, Norman M, Tome-Fernandez A, Ainsworth E, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Sci Rep. 2015 Jul 1;5:11677. doi: 10.1038/srep11677.

12.

Genetic Diversity of the Ring-Tailed Lemur (Lemur catta) in South-Central Madagascar.

Clarke TA, Gray O, Gould L, Burrell AS.

Folia Primatol (Basel). 2015;86(1-2):76-84. doi: 10.1159/000368668. Epub 2015 May 19.

PMID:
26022303
13.

Characterization of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth.

Beckwith CR, Edwards MJ, Lawes M, Shi L, Butt JN, Richardson DJ, Clarke TA.

Front Microbiol. 2015 Apr 28;6:332. doi: 10.3389/fmicb.2015.00332. eCollection 2015.

14.

Identification of furfural resistant strains of Saccharomyces cerevisiae and Saccharomyces paradoxus from a collection of environmental and industrial isolates.

Field SJ, Ryden P, Wilson D, James SA, Roberts IN, Richardson DJ, Waldron KW, Clarke TA.

Biotechnol Biofuels. 2015 Feb 26;8:33. doi: 10.1186/s13068-015-0217-z. eCollection 2015.

15.

Resolution of key roles for the distal pocket histidine in cytochrome C nitrite reductases.

Lockwood CW, Burlat B, Cheesman MR, Kern M, Simon J, Clarke TA, Richardson DJ, Butt JN.

J Am Chem Soc. 2015 Mar 4;137(8):3059-68. doi: 10.1021/ja512941j. Epub 2015 Feb 18.

16.

A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA.

Liu Y, Wang Z, Liu J, Levar C, Edwards MJ, Babauta JT, Kennedy DW, Shi Z, Beyenal H, Bond DR, Clarke TA, Butt JN, Richardson DJ, Rosso KM, Zachara JM, Fredrickson JK, Shi L.

Environ Microbiol Rep. 2014 Dec;6(6):776-85. doi: 10.1111/1758-2229.12204. Epub 2014 Sep 24.

17.

The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface.

Edwards MJ, Baiden NA, Johs A, Tomanicek SJ, Liang L, Shi L, Fredrickson JK, Zachara JM, Gates AJ, Butt JN, Richardson DJ, Clarke TA.

FEBS Lett. 2014 May 21;588(10):1886-90. doi: 10.1016/j.febslet.2014.04.013. Epub 2014 Apr 18.

18.

Controlling electron transfer at the microbe-mineral interface.

Richardson DJ, Butt JN, Clarke TA.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7537-8. doi: 10.1073/pnas.1305244110. Epub 2013 Apr 29. No abstract available.

19.

Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals.

White GF, Shi Z, Shi L, Wang Z, Dohnalkova AC, Marshall MJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Proc Natl Acad Sci U S A. 2013 Apr 16;110(16):6346-51. doi: 10.1073/pnas.1220074110. Epub 2013 Mar 28.

20.

Development of a proteoliposome model to probe transmembrane electron-transfer reactions.

White GF, Shi Z, Shi L, Dohnalkova AC, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Biochem Soc Trans. 2012 Dec 1;40(6):1257-60. doi: 10.1042/BST20120116.

PMID:
23176464
21.

Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF.

Breuer M, Zarzycki P, Shi L, Clarke TA, Edwards MJ, Butt JN, Richardson DJ, Fredrickson JK, Zachara JM, Blumberger J, Rosso KM.

Biochem Soc Trans. 2012 Dec 1;40(6):1198-203. doi: 10.1042/BST20120139.

PMID:
23176454
22.

Analysis of structural MtrC models based on homology with the crystal structure of MtrF.

Edwards MJ, Fredrickson JK, Zachara JM, Richardson DJ, Clarke TA.

Biochem Soc Trans. 2012 Dec 1;40(6):1181-5. doi: 10.1042/BST20120132.

PMID:
23176451
23.

The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates.

Edwards MJ, Hall A, Shi L, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ, Clarke TA.

Structure. 2012 Jul 3;20(7):1275-84. doi: 10.1016/j.str.2012.04.016. Epub 2012 Jun 7.

24.

The 'porin-cytochrome' model for microbe-to-mineral electron transfer.

Richardson DJ, Butt JN, Fredrickson JK, Zachara JM, Shi L, Edwards MJ, White G, Baiden N, Gates AJ, Marritt SJ, Clarke TA.

Mol Microbiol. 2012 Jul;85(2):201-12. doi: 10.1111/j.1365-2958.2012.08088.x. Epub 2012 May 30. Review.

25.

The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways.

Felgate H, Giannopoulos G, Sullivan MJ, Gates AJ, Clarke TA, Baggs E, Rowley G, Richardson DJ.

Environ Microbiol. 2012 Jul;14(7):1788-800. doi: 10.1111/j.1462-2920.2012.02789.x. Epub 2012 May 30.

PMID:
22642644
26.

Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration.

Richardson DJ, Edwards MJ, White GF, Baiden N, Hartshorne RS, Fredrickson J, Shi L, Zachara J, Gates AJ, Butt JN, Clarke TA.

Biochem Soc Trans. 2012 Jun 1;40(3):493-500. doi: 10.1042/BST20120018. Review.

PMID:
22616858
27.

Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1.

Shi L, Rosso KM, Clarke TA, Richardson DJ, Zachara JM, Fredrickson JK.

Front Microbiol. 2012 Feb 15;3:50. doi: 10.3389/fmicb.2012.00050. eCollection 2012.

28.

FASTER (Face, Arm, Speech, Time, Emergency Response): experience of Central Coast Stroke Services implementation of a pre-hospital notification system for expedient management of acute stroke.

O'Brien W, Crimmins D, Donaldson W, Risti R, Clarke TA, Whyte S, Sturm J.

J Clin Neurosci. 2012 Feb;19(2):241-5. doi: 10.1016/j.jocn.2011.06.009. Epub 2011 Nov 25.

PMID:
22118794
29.

Characterization of the active site and calcium binding in cytochrome c nitrite reductases.

Lockwood CW, Clarke TA, Butt JN, Hemmings AM, Richardson DJ.

Biochem Soc Trans. 2011 Dec;39(6):1871-5. doi: 10.1042/BST20110731. Review.

PMID:
22103542
30.

ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR.

Appia-Ayme C, Hall A, Patrick E, Rajadurai S, Clarke TA, Rowley G.

Biochem J. 2012 Feb 15;442(1):85-93. doi: 10.1042/BJ20111639.

PMID:
22084975
31.

Substitutions in the redox-sensing PAS domain of the NifL regulatory protein define an inter-subunit pathway for redox signal transmission.

Little R, Salinas P, Slavny P, Clarke TA, Dixon R.

Mol Microbiol. 2011 Oct;82(1):222-35. doi: 10.1111/j.1365-2958.2011.07812.x. Epub 2011 Sep 8.

32.

Structures of Phytophthora RXLR effector proteins: a conserved but adaptable fold underpins functional diversity.

Boutemy LS, King SR, Win J, Hughes RK, Clarke TA, Blumenschein TM, Kamoun S, Banfield MJ.

J Biol Chem. 2011 Oct 14;286(41):35834-42. doi: 10.1074/jbc.M111.262303. Epub 2011 Aug 3.

33.

Structure of a bacterial cell surface decaheme electron conduit.

Clarke TA, Edwards MJ, Gates AJ, Hall A, White GF, Bradley J, Reardon CL, Shi L, Beliaev AS, Marshall MJ, Wang Z, Watmough NJ, Fredrickson JK, Zachara JM, Butt JN, Richardson DJ.

Proc Natl Acad Sci U S A. 2011 Jun 7;108(23):9384-9. doi: 10.1073/pnas.1017200108. Epub 2011 May 23.

34.

Molecular interactions between multihaem cytochromes: probing the protein-protein interactions between pentahaem cytochromes of a nitrite reductase complex.

Lockwood C, Butt JN, Clarke TA, Richardson DJ.

Biochem Soc Trans. 2011 Jan;39(1):263-8. doi: 10.1042/BST0390263.

PMID:
21265785
35.

Electron transfer and half-reactivity in nitrogenase.

Clarke TA, Fairhurst S, Lowe DJ, Watmough NJ, Eady RR.

Biochem Soc Trans. 2011 Jan;39(1):201-6. doi: 10.1042/BST0390201.

PMID:
21265773
36.

Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coli.

Kemp GL, Clarke TA, Marritt SJ, Lockwood C, Poock SR, Hemmings AM, Richardson DJ, Cheesman MR, Butt JN.

Biochem J. 2010 Oct 1;431(1):73-80. doi: 10.1042/BJ20100866.

PMID:
20629638
37.

Characterization of an electron conduit between bacteria and the extracellular environment.

Hartshorne RS, Reardon CL, Ross D, Nuester J, Clarke TA, Gates AJ, Mills PC, Fredrickson JK, Zachara JM, Shi L, Beliaev AS, Marshall MJ, Tien M, Brantley S, Butt JN, Richardson DJ.

Proc Natl Acad Sci U S A. 2009 Dec 29;106(52):22169-74. doi: 10.1073/pnas.0900086106. Epub 2009 Dec 17.

38.

A crystal structure of the bifunctional antibiotic simocyclinone D8, bound to DNA gyrase.

Edwards MJ, Flatman RH, Mitchenall LA, Stevenson CE, Le TB, Clarke TA, McKay AR, Fiedler HP, Buttner MJ, Lawson DM, Maxwell A.

Science. 2009 Dec 4;326(5958):1415-8. doi: 10.1126/science.1179123.

39.

Quaternary structure changes in a second Per-Arnt-Sim domain mediate intramolecular redox signal relay in the NifL regulatory protein.

Slavny P, Little R, Salinas P, Clarke TA, Dixon R.

Mol Microbiol. 2010 Jan;75(1):61-75. doi: 10.1111/j.1365-2958.2009.06956.x. Epub 2009 Nov 10.

40.

The transcriptional repressor protein NsrR senses nitric oxide directly via a [2Fe-2S] cluster.

Tucker NP, Hicks MG, Clarke TA, Crack JC, Chandra G, Le Brun NE, Dixon R, Hutchings MI.

PLoS One. 2008;3(11):e3623. doi: 10.1371/journal.pone.0003623. Epub 2008 Nov 7.

41.

The role of multihaem cytochromes in the respiration of nitrite in Escherichia coli and Fe(III) in Shewanella oneidensis.

Clarke TA, Holley T, Hartshorne RS, Fredrickson JK, Zachara JM, Shi L, Richardson DJ.

Biochem Soc Trans. 2008 Oct;36(Pt 5):1005-10. doi: 10.1042/BST0361005.

PMID:
18793179
42.

Escherichia coli cytochrome c nitrite reductase NrfA.

Clarke TA, Mills PC, Poock SR, Butt JN, Cheesman MR, Cole JA, Hinton JC, Hemmings AM, Kemp G, Söderberg CA, Spiro S, Van Wonderen J, Richardson DJ.

Methods Enzymol. 2008;437:63-77. doi: 10.1016/S0076-6879(07)37004-3. Review.

PMID:
18433623
43.

Role of a conserved glutamine residue in tuning the catalytic activity of Escherichia coli cytochrome c nitrite reductase.

Clarke TA, Kemp GL, Van Wonderen JH, Doyle RM, Cole JA, Tovell N, Cheesman MR, Butt JN, Richardson DJ, Hemmings AM.

Biochemistry. 2008 Mar 25;47(12):3789-99. doi: 10.1021/bi702175w. Epub 2008 Mar 1.

PMID:
18311941
44.

Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors.

Hartshorne RS, Jepson BN, Clarke TA, Field SJ, Fredrickson J, Zachara J, Shi L, Butt JN, Richardson DJ.

J Biol Inorg Chem. 2007 Sep;12(7):1083-94. Epub 2007 Aug 14.

PMID:
17701062
45.

Characterization of protein-protein interactions involved in iron reduction by Shewanella oneidensis MR-1.

Ross DE, Ruebush SS, Brantley SL, Hartshorne RS, Clarke TA, Richardson DJ, Tien M.

Appl Environ Microbiol. 2007 Sep;73(18):5797-808. Epub 2007 Aug 3.

47.

A dedicated haem lyase is required for the maturation of a novel bacterial cytochrome c with unconventional covalent haem binding.

Hartshorne RS, Kern M, Meyer B, Clarke TA, Karas M, Richardson DJ, Simon J.

Mol Microbiol. 2007 May;64(4):1049-60.

48.

Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli.

Jepson BJ, Mohan S, Clarke TA, Gates AJ, Cole JA, Butler CS, Butt JN, Hemmings AM, Richardson DJ.

J Biol Chem. 2007 Mar 2;282(9):6425-37. Epub 2006 Nov 27.

49.
50.

Workload and short-term outcome of babies weighing 2,500 grams or more at birth admitted to the paediatric unit of the Rotunda Hospital.

Rohininath T, O'Connell LA, Sheehan K, Corcoran D, Matthews TG, Clarke TA.

J Matern Fetal Neonatal Med. 2005 Feb;17(2):139-43.

PMID:
16076623

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