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Impaired alanine transport or exposure to d-cycloserine increases the susceptibility of MRSA to β-lactam antibiotics.

Gallagher LA, Shears RK, Fingleton C, Alvarez L, Waters EM, Clarke J, Bricio-Moreno L, Campbell C, Yadav AK, Razvi F, O'Neill E, O'Neill AJ, Cava F, Fey PD, Kadioglu A, O'Gara JP.

J Infect Dis. 2019 Oct 19. pii: jiz542. doi: 10.1093/infdis/jiz542. [Epub ahead of print]


Exploring the views of female genital mutilation survivors, their male partners and healthcare professionals on the timing of deinfibulation surgery and NHS FGM care provision (the FGM Sister Study): protocol for a qualitative study.

Jones L, Danks E, Clarke J, Alidu L, Costello B, Jolly K, Byrne A, Fassam-Wright M, Latthe P, Taylor J.

BMJ Open. 2019 Oct 17;9(10):e034140. doi: 10.1136/bmjopen-2019-034140.


Reduction in Hospitalizations for Esophageal Reflux in a Decade with Minimal Increases in Other Functional and Motor Disorders.

Zikos TA, Hendler S, Clarke JO, Triadafilopoulos G, Nguyen L, Limketkai BN.

Dig Dis Sci. 2019 Oct 16. doi: 10.1007/s10620-019-05895-x. [Epub ahead of print]


Trends in physical fitness among Canadian children and youth.

Colley RC, Clarke J, Doyon CY, Janssen I, Lang JJ, Timmons BW, Tremblay MS.

Health Rep. 2019 Oct 16;30(10):3-13. doi: 10.25318/82-003-x201901000001-eng.


The benefits and implementation challenges of the first state-wide comprehensive medication for addictions program in a unified jail and prison setting.

Brinkley-Rubinstein L, Peterson M, Clarke J, Macmadu A, Truong A, Pognon K, Parker M, Marshall B, Green T, Martin R, Stein L, Rich JD.

Drug Alcohol Depend. 2019 Oct 7;205:107514. doi: 10.1016/j.drugalcdep.2019.06.016. [Epub ahead of print]


Impact of nurse practitioner navigation on access to care for patients with refractory gastroesophageal reflux disease.

Nandwani M, Clarke JO, Kuriakose C, Stevenson E.

J Am Assoc Nurse Pract. 2019 Sep 24. doi: 10.1097/JXX.0000000000000296. [Epub ahead of print]


Reirradiation of recurrent high-grade glioma and development of prognostic scores for progression and survival.

Chapman CH, Hara JH, Molinaro AM, Clarke JL, Oberheim Bush NA, Taylor JW, Butowski NA, Chang SM, Fogh SE, Sneed PK, Nakamura JL, Raleigh DR, Braunstein SE.

Neurooncol Pract. 2019 Sep;6(5):364-374. doi: 10.1093/nop/npz017. Epub 2019 Apr 12.


Pre-exposure prophylaxis awareness and interest among participants in a medications for addiction treatment program in a unified jail and prison setting in Rhode Island.

Peterson M, Macmadu A, Truong AQ, Rich J, Pognon K, Lurie M, Clarke JG, Brinkley-Rubinstein L.

J Subst Abuse Treat. 2019 Nov;106:73-78. doi: 10.1016/j.jsat.2019.08.015. Epub 2019 Aug 28.


Esophagogastroduodenoscopy and Esophageal Involvement in Patients with Pemphigus Vulgaris.

Ozeki KA, Zikos TA, Clarke JO, Sonu I.

Dysphagia. 2019 Sep 19. doi: 10.1007/s00455-019-10055-4. [Epub ahead of print]


The influence of personality on trajectories of distress, health and functioning in mild-to-moderately depressed adults with type 2 diabetes.

Sanatkar S, Baldwin P, Clarke J, Fletcher S, Gunn J, Wilhelm K, Campbell L, Zwar N, Harris M, Lapsley H, Hadzi-Pavlovic D, Christensen H, Proudfoot J.

Psychol Health Med. 2019 Sep 20:1-13. doi: 10.1080/13548506.2019.1668567. [Epub ahead of print]


Layer-by-layer constructed hyaluronic acid/chitosan multilayers as antifouling and fouling-release coatings.

Yu W, Koc J, Finlay JA, Clarke JL, Clare AS, Rosenhahn A.

Biointerphases. 2019 Sep 19;14(5):051002. doi: 10.1116/1.5110887.


Assessment of the Dose-Response Relationship Between Folate Exposure and Cognitive Impairment: Synthesizing Data from Documented Studies.

Wang B, Sahyoun NR, Shao K, Dutta E, Clarke J.

Risk Anal. 2019 Sep 19. doi: 10.1111/risa.13404. [Epub ahead of print]


Direct measurements of polyurethane foam (PUF) ‒ air partitioning coefficients for chemicals of emerging concern capable of equilibrating in PUF disk samplers.

Saini A, Clarke J, Harner T.

Chemosphere. 2019 Nov;234:925-930. doi: 10.1016/j.chemosphere.2019.06.134. Epub 2019 Jun 19.


Improving Engagement with Biomechanics: Student Perspectives and A Professional Development Initiative.

Shultz SP, Millar SK, Fink P, Hébert-Losier K, Handsfield G, Sheerin K, Wells D, Clarke J.

J Biomech Eng. 2019 Sep 1. doi: 10.1115/1.4044782. [Epub ahead of print]


Recurrent non-canonical histone H3 mutations in spinal cord diffuse gliomas.

Sloan EA, Cooney T, Oberheim Bush NA, Buerki R, Taylor J, Clarke JL, Torkildson J, Kline C, Reddy A, Mueller S, Banerjee A, Butowski N, Chang S, Mummaneni PV, Chou D, Tan L, Theodosopoulos P, McDermott M, Berger M, Raffel C, Gupta N, Sun PP, Li Y, Shah V, Cha S, Braunstein S, Raleigh DR, Samuel D, Scharnhorst D, Fata C, Guo H, Moes G, Kim JYH, Koschmann C, Van Ziffle J, Onodera C, Devine P, Grenert JP, Lee JC, Pekmezci M, Phillips JJ, Tihan T, Bollen AW, Perry A, Solomon DA.

Acta Neuropathol. 2019 Nov;138(5):877-881. doi: 10.1007/s00401-019-02072-2. Epub 2019 Sep 12. No abstract available.


Zika virus replicates in adult human brain tissue and impairs synapses and memory in mice.

Figueiredo CP, Barros-Aragão FGQ, Neris RLS, Frost PS, Soares C, Souza INO, Zeidler JD, Zamberlan DC, de Sousa VL, Souza AS, Guimarães ALA, Bellio M, Marcondes de Souza J, Alves-Leon SV, Neves GA, Paula-Neto HA, Castro NG, De Felice FG, Assunção-Miranda I, Clarke JR, Da Poian AT, Ferreira ST.

Nat Commun. 2019 Sep 5;10(1):3890. doi: 10.1038/s41467-019-11866-7.


Accelerometer-measured moderate-to-vigorous physical activity of Canadian adults, 2007 to 2017.

Clarke J, Colley R, Janssen I, Tremblay MS.

Health Rep. 2019 Aug 21;30(8):3-10. doi: 10.25318/82-003-x201900800001-eng.


A phase Ib study of the combination regorafenib with PF-03446962 in patients with refractory metastatic colorectal cancer (REGAL-1 trial).

Clarke JM, Blobe GC, Strickler JH, Uronis HE, Zafar SY, Morse M, Dropkin E, Howard L, O'Neill M, Rushing CN, Niedzwiecki D, Watson H, Bolch E, Arrowood C, Liu Y, Nixon AB, Hurwitz HI.

Cancer Chemother Pharmacol. 2019 Oct;84(4):909-917. doi: 10.1007/s00280-019-03916-0. Epub 2019 Aug 23.


A case of recurrent Corynebacterium jeikeium endocarditis: Unanswered questions for the treatment of chronic endovascular infections.

Clarke JD, Abdur Rahman M, Saul Z.

IDCases. 2019 Jul 27;18:e00610. doi: 10.1016/j.idcr.2019.e00610. eCollection 2019.


A Pharmacokinetic Natural Product-Disease-Drug Interaction: A Double Hit of Silymarin and Nonalcoholic Steatohepatitis on Hepatic Transporters in a Rat Model.

Montonye ML, Tian DD, Arman T, Lynch KD, Hagenbuch B, Paine MF, Clarke JD.

J Pharmacol Exp Ther. 2019 Nov;371(2):385-393. doi: 10.1124/jpet.119.260489. Epub 2019 Aug 16.


Correction to: Effect of mucin 4 allele on susceptibility to experimental infection with enterotoxigenic F4 Escherichia coli in pigs fed experimental diets.

Sterndale SO, Evans DJ, Mansfield JP, Clarke J, Sahibzada S, Abraham S, O'Dea M, Miller DW, Kim JC, Pluske JR.

J Anim Sci Biotechnol. 2019 Aug 12;10:71. doi: 10.1186/s40104-019-0383-0. eCollection 2019.


Exome sequencing in a familial form of anorexia nervosa supports multigenic etiology.

Bienvenu T, Lebrun N, Clarke J, Duriez P, Gorwood P, Ramoz N.

J Neural Transm (Vienna). 2019 Aug 6. doi: 10.1007/s00702-019-02056-2. [Epub ahead of print]


Attitudes toward fertility and fertility preservation in women with glioma.

Stiner RK, Clarke JL, Sinha N, Chan J, Letourneau JM, Niemasik EE, Rabbitt JE, Chang SM, Butowski NA, Prados MD, Rosen MP.

Neurooncol Pract. 2019 May;6(3):218-225. doi: 10.1093/nop/npy036. Epub 2018 Sep 26.


Genomic mechanisms for the evolution of flightlessness in steamer ducks.

Clarke JA.

Nature. 2019 Aug;572(7768):182-184. doi: 10.1038/d41586-019-02234-y. No abstract available.


Brief video intervention to improve attitudes throughout medications for opioid use disorder in a correctional setting.

Lam JA, Lee HIS, Truong AQ, Macmadu A, Clarke JG, Rich J, Brockmann B.

J Subst Abuse Treat. 2019 Sep;104:28-33. doi: 10.1016/j.jsat.2019.06.001. Epub 2019 Jun 10.


3D bioprinting of mature bacterial biofilms for antimicrobial resistance drug testing.

Ning E, Turnbull G, Clarke J, Picard F, Riches P, Vendrell M, Graham D, Wark AW, Faulds K, Shu W.

Biofabrication. 2019 Sep 13;11(4):045018. doi: 10.1088/1758-5090/ab37a0.


Fusarium Head Blight in Durum Wheat: Recent Status, Breeding Directions, and Future Research Prospects.

Haile JK, N'Diaye A, Walkowiak S, Nilsen KT, Clarke JM, Kutcher HR, Steiner B, Buerstmayr H, Pozniak CJ.

Phytopathology. 2019 Oct;109(10):1664-1675. doi: 10.1094/PHYTO-03-19-0095-RVW. Epub 2019 Sep 3. Review.


High inter- and intraspecific niche overlap among three sympatrically breeding, closely related seabird species: Generalist foraging as an adaptation to a highly variable environment?

Dehnhard N, Achurch H, Clarke J, Michel LN, Southwell C, Sumner MD, Eens M, Emmerson L.

J Anim Ecol. 2019 Jul 31. doi: 10.1111/1365-2656.13078. [Epub ahead of print]


Therapeutic outcomes in non-small cell lung cancer with BRAF mutations: a single institution, retrospective cohort study.

Tan I, Stinchcombe TE, Ready NE, Crawford J, Datto MB, Nagy RJ, Lanman RB, Gu L, Clarke JM.

Transl Lung Cancer Res. 2019 Jun;8(3):258-267. doi: 10.21037/tlcr.2019.04.03.


Effect of mucin 4 allele on susceptibility to experimental infection with enterotoxigenic F4 Escherichia coli in pigs fed experimental diets.

Sterndale SO, Evans DJ, Mansfield JP, Clarke J, Sahibzada S, Abraham S, O'Dea M, Miller DW, Kim JC, Pluske JR.

J Anim Sci Biotechnol. 2019 Jul 17;10:56. doi: 10.1186/s40104-019-0366-1. eCollection 2019. Erratum in: J Anim Sci Biotechnol. 2019 Aug 12;10:71.


An avian femur from the Late Cretaceous of Vega Island, Antarctic Peninsula: removing the record of cursorial landbirds from the Mesozoic of Antarctica.

West AR, Torres CR, Case JA, Clarke JA, O'Connor PM, Lamanna MC.

PeerJ. 2019 Jul 10;7:e7231. doi: 10.7717/peerj.7231. eCollection 2019.


Sub-Chronic Microcystin-LR Liver Toxicity in Preexisting Diet-Induced Nonalcoholic Steatohepatitis in Rats.

Arman T, Lynch KD, Montonye ML, Goedken M, Clarke JD.

Toxins (Basel). 2019 Jul 9;11(7). pii: E398. doi: 10.3390/toxins11070398.


Estimating Flight Style of Early Eocene Stem Palaeognath Bird Calciavis grandei (Lithornithidae).

Torres CR, Norell MA, Clarke JA.

Anat Rec (Hoboken). 2019 Jul 16. doi: 10.1002/ar.24207. [Epub ahead of print]


Evaluating the impact of organisational digital maturity on clinical outcomes in secondary care in England.

Martin G, Clarke J, Liew F, Arora S, King D, Aylin P, Darzi A.

NPJ Digit Med. 2019 May 16;2:41. doi: 10.1038/s41746-019-0118-9. eCollection 2019.


Guiding interoperable electronic health records through patient-sharing networks.

Clarke JM, Warren LR, Arora S, Barahona M, Darzi AW.

NPJ Digit Med. 2018 Dec 10;1:65. doi: 10.1038/s41746-018-0072-y. eCollection 2018.


Pharmacokinetic characteristics of vactosertib, a new activin receptor-like kinase 5 inhibitor, in patients with advanced solid tumors in a first-in-human phase 1 study.

Jung SY, Hwang S, Clarke JM, Bauer TM, Keedy VL, Lee H, Park N, Kim SJ, Lee JI.

Invest New Drugs. 2019 Jul 13. doi: 10.1007/s10637-019-00835-y. [Epub ahead of print]


Transcriptional characterisation of the Exaiptasia pallida pedal disc.

Davey PA, Rodrigues M, Clarke JL, Aldred N.

BMC Genomics. 2019 Jul 12;20(1):581. doi: 10.1186/s12864-019-5917-5.


Time series modeling of cell cycle exit identifies Brd4 dependent regulation of cerebellar neurogenesis.

Penas C, Maloof ME, Stathias V, Long J, Tan SK, Mier J, Fang Y, Valdes C, Rodriguez-Blanco J, Chiang CM, Robbins DJ, Liebl DJ, Lee JK, Hatten ME, Clarke J, Ayad NG.

Nat Commun. 2019 Jul 10;10(1):3028. doi: 10.1038/s41467-019-10799-5.


Post-release treatment uptake among participants of the Rhode Island Department of Corrections comprehensive medication assisted treatment program.

Martin RA, Gresko SA, Brinkley-Rubinstein L, Stein LAR, Clarke JG.

Prev Med. 2019 Jul 4:105766. doi: 10.1016/j.ypmed.2019.105766. [Epub ahead of print]


Viral delivery of a microRNA to Gba to the mouse central nervous system models neuronopathic Gaucher disease.

Jackson KL, Viel C, Clarke J, Bu J, Chan M, Wang B, Shihabuddin LS, Sardi SP.

Neurobiol Dis. 2019 Oct;130:104513. doi: 10.1016/j.nbd.2019.104513. Epub 2019 Jun 21.


Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer.

Clarke J, Panwar B, Madrigal A, Singh D, Gujar R, Wood O, Chee SJ, Eschweiler S, King EV, Awad AS, Hanley CJ, McCann KJ, Bhattacharyya S, Woo E, Alzetani A, Seumois G, Thomas GJ, Ganesan AP, Friedmann PS, Sanchez-Elsner T, Ay F, Ottensmeier CH, Vijayanand P.

J Exp Med. 2019 Sep 2;216(9):2128-2149. doi: 10.1084/jem.20190249. Epub 2019 Jun 21.


Consensus workshops on the development of an ADHD medication management protocol using QbTest: developing a clinical trial protocol with multidisciplinary stakeholders.

Hall CL, Brown S, James M, Martin JL, Brown N, Selby K, Clarke J, Williams L, Sayal K, Hollis C, Groom MJ.

BMC Med Res Methodol. 2019 Jun 18;19(1):126. doi: 10.1186/s12874-019-0772-2.


Basal Protrusions Mediate Spatiotemporal Patterns of Spinal Neuron Differentiation.

Hadjivasiliou Z, Moore RE, McIntosh R, Galea GL, Clarke JDW, Alexandre P.

Dev Cell. 2019 Jun 17;49(6):907-919.e10. doi: 10.1016/j.devcel.2019.05.035.


Using wastewater-based analysis to monitor the effects of legalized retail sales on cannabis consumption in Washington State, USA.

Burgard DA, Williams J, Westerman D, Rushing R, Carpenter R, LaRock A, Sadetsky J, Clarke J, Fryhle H, Pellman M, Banta-Green CJ.

Addiction. 2019 Sep;114(9):1582-1590. doi: 10.1111/add.14641. Epub 2019 Jun 18.


Gastric per-oral endoscopic myotomy: Current status and future directions.

Podboy A, Hwang JH, Nguyen LA, Garcia P, Zikos TA, Kamal A, Triadafilopoulos G, Clarke JO.

World J Gastroenterol. 2019 Jun 7;25(21):2581-2590. doi: 10.3748/wjg.v25.i21.2581. Review.


Engineering Genetic Predisposition in Human Neuroepithelial Stem Cells Recapitulates Medulloblastoma Tumorigenesis.

Huang M, Tailor J, Zhen Q, Gillmor AH, Miller ML, Weishaupt H, Chen J, Zheng T, Nash EK, McHenry LK, An Z, Ye F, Takashima Y, Clarke J, Ayetey H, Cavalli FMG, Luu B, Moriarity BS, Ilkhanizadeh S, Chavez L, Yu C, Kurian KM, Magnaldo T, Sevenet N, Koch P, Pollard SM, Dirks P, Snyder MP, Largaespada DA, Cho YJ, Phillips JJ, Swartling FJ, Morrissy AS, Kool M, Pfister SM, Taylor MD, Smith A, Weiss WA.

Cell Stem Cell. 2019 Sep 5;25(3):433-446.e7. doi: 10.1016/j.stem.2019.05.013. Epub 2019 Jun 13.


Noninferiority of Preservative-free Versus BAK-preserved Latanoprost-timolol Fixed Combination Eye Drops in Patients With Open-angle Glaucoma or Ocular Hypertension.

Aptel F, Pfeiffer N, Schmickler S, Clarke J, Lavín-Dapena C, Moreno-Montañés J, Żarnowski T, Csutak A, Jugaste T, Volksone L, Astakhov YS, Coupier L, Nordmann JP, Stalmans I; T2347 Study Group.

J Glaucoma. 2019 Jun;28(6):498-506. doi: 10.1097/IJG.0000000000001248.


Integrating natural history collections and comparative genomics to study the genetic architecture of convergent evolution.

Lamichhaney S, Card DC, Grayson P, Tonini JFR, Bravo GA, Näpflin K, Termignoni-Garcia F, Torres C, Burbrink F, Clarke JA, Sackton TB, Edwards SV.

Philos Trans R Soc Lond B Biol Sci. 2019 Jul 22;374(1777):20180248. doi: 10.1098/rstb.2018.0248. Epub 2019 Jun 3.


Recruiting to a Randomized Controlled Trial of a Web-Based Program for People With Type 2 Diabetes and Depression: Lessons Learned at the Intersection of e-Mental Health and Primary Care.

Fletcher S, Clarke J, Sanatkar S, Baldwin P, Gunn J, Zwar N, Campbell L, Wilhelm K, Harris M, Lapsley H, Hadzi-Pavlovic D, Proudfoot J.

J Med Internet Res. 2019 May 24;21(5):e12793. doi: 10.2196/12793.


Late Cognitive Consequences of Gestational Diabetes to the Offspring, in a New Mouse Model.

de Sousa RAL, de Lima EV, da Silva TP, de Souza RV, Figueiredo CP, Passos GF, Clarke JR.

Mol Neurobiol. 2019 May 21. doi: 10.1007/s12035-019-1624-0. [Epub ahead of print]


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