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Role of the Photorhabdus Dam methyltransferase during interactions with its invertebrate hosts.

Payelleville A, Blackburn D, Lanois A, Pagès S, Cambon MC, Ginibre N, Clarke DJ, Givaudan A, Brillard J.

PLoS One. 2019 Oct 9;14(10):e0212655. doi: 10.1371/journal.pone.0212655. eCollection 2019.


Nigral overexpression of α-synuclein in a rat Parkinson's disease model indicates alterations in the enteric nervous system and the gut microbiome.

O'Donovan SM, Crowley EK, Brown JR, O'Sullivan O, O'Leary OF, Timmons S, Nolan YM, Clarke DJ, Hyland NP, Joyce SA, Sullivan AM, O'Neill C.

Neurogastroenterol Motil. 2019 Oct 2:e13726. doi: 10.1111/nmo.13726. [Epub ahead of print]


The pyrenoidal linker protein EPYC1 phase separates with hybrid Arabidopsis-Chlamydomonas Rubisco through interactions with the algal Rubisco small subunit.

Atkinson N, Velanis CN, Wunder T, Clarke DJ, Mueller-Cajar O, McCormick AJ.

J Exp Bot. 2019 Oct 15;70(19):5271-5285. doi: 10.1093/jxb/erz275.


Native Ion Mobility Mass Spectrometry (IM-MS) reveals that small organic acid fragments impart gas-phase stability to carbonic anhydrase II.

Veale CGL, Mateos Jimenez M, Mackay CL, Clarke DJ.

Rapid Commun Mass Spectrom. 2019 Sep 3. doi: 10.1002/rcm.8570. [Epub ahead of print]


Catalytic Knockdown of miR-21 by Artificial Ribonuclease: Biological Performance in Tumor Model.

Patutina OA, Miroshnichenko SK, Mironova NL, Sen'kova AV, Bichenkova EV, Clarke DJ, Vlassov VV, Zenkova MA.

Front Pharmacol. 2019 Aug 8;10:879. doi: 10.3389/fphar.2019.00879. eCollection 2019.


Exploring adults' experiences of sedentary behaviour and participation in non-workplace interventions designed to reduce sedentary behaviour: a thematic synthesis of qualitative studies.

Rawlings GH, Williams RK, Clarke DJ, English C, Fitzsimons C, Holloway I, Lawton R, Mead G, Patel A, Forster A.

BMC Public Health. 2019 Aug 13;19(1):1099. doi: 10.1186/s12889-019-7365-1.


Erratum: Use of isotopically labeled substrates reveals kinetic differences between human and bacterial serine palmitoyltransferase.

Harrison PJ, Gable K, Somashekarappa N, Kelly V, Clarke DJ, Naismith JH, Dunn TM, Campopiano DJ.

J Lipid Res. 2019 Aug;60(8):1489. doi: 10.1194/jlr.ERR119000228. No abstract available.


Untargeted Metabolite Mapping in 3D Cell Culture Models Using High Spectral Resolution FT-ICR Mass Spectrometry Imaging.

Tucker LH, Hamm GR, Sargeant RJE, Goodwin RJA, Mackay CL, Campbell CJ, Clarke DJ.

Anal Chem. 2019 Aug 6;91(15):9522-9529. doi: 10.1021/acs.analchem.9b00661. Epub 2019 Jul 16.


Tonantzin, a New Genus of Bess Beetle (Coleoptera, Passalidae) from a Montane Subtropical Forest in Central Mexico, with a Review of the Taxonomic Significance of the Mesofrontal Structure in Proculini.

Beza-Beza CF, Jiménez-Ferbans L, Clarke DJ, Reyes-Castillo P, McKenna DD.

Insects. 2019 Jun 28;10(7). pii: E188. doi: 10.3390/insects10070188.


Sequence-Specific Detection of Unlabeled Nucleic Acid Biomarkers Using a "One-Pot" 3D Molecular Sensor.

Yousaf S, King PJS, Miller AF, Saiani A, Clarke DJ, Trivoluzzi LT, Aojula HS, Bichenkova EV.

Anal Chem. 2019 Aug 6;91(15):10016-10025. doi: 10.1021/acs.analchem.9b01841. Epub 2019 Jul 11.


Microglial cell hyper-ramification and neuronal dendritic spine loss in the hippocampus and medial prefrontal cortex in a mouse model of PTSD.

Smith KL, Kassem MS, Clarke DJ, Kuligowski MP, Bedoya-Pérez MA, Todd SM, Lagopoulos J, Bennett MR, Arnold JC.

Brain Behav Immun. 2019 Aug;80:889-899. doi: 10.1016/j.bbi.2019.05.042. Epub 2019 May 31.


MCPH1 is essential for cellular adaptation to the G2-phase decatenation checkpoint.

Arroyo M, Kuriyama R, Guerrero I, Keifenheim D, Cañuelo A, Calahorra J, Sánchez A, Clarke DJ, Marchal JA.

FASEB J. 2019 Jul;33(7):8363-8374. doi: 10.1096/fj.201802009RR. Epub 2019 Apr 9.


Microbial Population Changes in Decaying Ascophyllum nodosum Result in Macroalgal-Polysaccharide-Degrading Bacteria with Potential Applicability in Enzyme-Assisted Extraction Technologies.

Ihua MW, Guihéneuf F, Mohammed H, Margassery LM, Jackson SA, Stengel DB, Clarke DJ, Dobson ADW.

Mar Drugs. 2019 Mar 29;17(4). pii: E200. doi: 10.3390/md17040200.


High resolution fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) for the characterisation of enzymatic processing of commercial lignin.

Echavarri-Bravo V, Tinzl M, Kew W, Cruickshank F, Logan Mackay C, Clarke DJ, Horsfall LE.

N Biotechnol. 2019 Sep 25;52:1-8. doi: 10.1016/j.nbt.2019.03.001. Epub 2019 Mar 25.


Iso-propyl stilbene: a life cycle signal?

Hapeshi A, Benarroch JM, Clarke DJ, Waterfield NR.

Microbiology. 2019 May;165(5):516-526. doi: 10.1099/mic.0.000790. Epub 2019 Mar 18.


Conservation of the structural and functional architecture of encapsulated ferritins in bacteria and archaea.

He D, Piergentili C, Ross J, Tarrant E, Tuck LR, Mackay CL, McIver Z, Waldron KJ, Clarke DJ, Marles-Wright J.

Biochem J. 2019 Mar 22;476(6):975-989. doi: 10.1042/BCJ20180922.


Use of isotopically labeled substrates reveals kinetic differences between human and bacterial serine palmitoyltransferase.

Harrison PJ, Gable K, Somashekarappa N, Kelly V, Clarke DJ, Naismith JH, Dunn TM, Campopiano DJ.

J Lipid Res. 2019 May;60(5):953-962. doi: 10.1194/jlr.M089367. Epub 2019 Feb 21. Erratum in: J Lipid Res. 2019 Aug;60(8):1489.


A specialized prey-capture apparatus in mid-Cretaceous rove beetles.

Cai C, Clarke DJ, Yin Z, Fu Y, Huang D.

Curr Biol. 2019 Feb 18;29(4):R116-R117. doi: 10.1016/j.cub.2019.01.002.


Cell cycle regulation of condensin Smc4.

Wei-Shan H, Amit VC, Clarke DJ.

Oncotarget. 2019 Jan 8;10(3):263-276. doi: 10.18632/oncotarget.26467. eCollection 2019 Jan 8.


The Glycine Lipids of Bacteroides thetaiotaomicron Are Important for Fitness during Growth In Vivo and In Vitro.

Lynch A, Tammireddy SR, Doherty MK, Whitfield PD, Clarke DJ.

Appl Environ Microbiol. 2019 May 2;85(10). pii: e02157-18. doi: 10.1128/AEM.02157-18. Print 2019 May 15.


Complementary Ionization Techniques for the Analysis of Scotch Whisky by High Resolution Mass Spectrometry.

Kew W, Mackay CL, Goodall I, Clarke DJ, Uhrín D.

Anal Chem. 2018 Oct 2;90(19):11265-11272. doi: 10.1021/acs.analchem.8b01446. Epub 2018 Sep 18.


HIV Education: Reflections on the Past, Priorities for the Future.

Aggleton P, Bhana D, Clarke DJ, Crewe M, Race K, Yankah E.

AIDS Educ Prev. 2018 Jun;30(3):254-266. doi: 10.1521/aeap.2018.30.3.254.


Nrg1 deficiency modulates the behavioural effects of prenatal stress in mice.

Clarke DJ, Sarkissian L, Todd SM, Suraev AS, Bahceci D, Brzozowska N, Arnold JC.

Prog Neuropsychopharmacol Biol Psychiatry. 2019 Jan 10;88:86-95. doi: 10.1016/j.pnpbp.2018.06.013. Epub 2018 Jun 30.


MALDI Matrix Application Utilizing a Modified 3D Printer for Accessible High Resolution Mass Spectrometry Imaging.

Tucker LH, Conde-González A, Cobice D, Hamm GR, Goodwin RJA, Campbell CJ, Clarke DJ, Mackay CL.

Anal Chem. 2018 Aug 7;90(15):8742-8749. doi: 10.1021/acs.analchem.8b00670. Epub 2018 Jul 27.


eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.

Clarke DJB, Kuleshov MV, Schilder BM, Torre D, Duffy ME, Keenan AB, Lachmann A, Feldmann AS, Gundersen GW, Silverstein MC, Wang Z, Ma'ayan A.

Nucleic Acids Res. 2018 Jul 2;46(W1):W171-W179. doi: 10.1093/nar/gky458.


Why do stroke survivors not receive recommended amounts of active therapy? Findings from the ReAcT study, a mixed-methods case-study evaluation in eight stroke units.

Clarke DJ, Burton LJ, Tyson SF, Rodgers H, Drummond A, Palmer R, Hoffman A, Prescott M, Tyrrell P, Brkic L, Grenfell K, Forster A.

Clin Rehabil. 2018 Aug;32(8):1119-1132. doi: 10.1177/0269215518765329. Epub 2018 Mar 27.


Neuregulin 1 Deficiency Modulates Adolescent Stress-Induced Dendritic Spine Loss in a Brain Region-Specific Manner and Increases Complement 4 Expression in the Hippocampus.

Clarke DJ, Chohan TW, Kassem MS, Smith KL, Chesworth R, Karl T, Kuligowski MP, Fok SY, Bennett MR, Arnold JC.

Schizophr Bull. 2019 Mar 7;45(2):339-349. doi: 10.1093/schbul/sby029.


Phylogenomic Data Yield New and Robust Insights into the Phylogeny and Evolution of Weevils.

Shin S, Clarke DJ, Lemmon AR, Moriarty Lemmon E, Aitken AL, Haddad S, Farrell BD, Marvaldi AE, Oberprieler RG, McKenna DD.

Mol Biol Evol. 2018 Apr 1;35(4):823-836. doi: 10.1093/molbev/msx324. Erratum in: Mol Biol Evol. 2018 Jul 1;35(7):1821.


Molecular phylogeny of Macrosiphini (Hemiptera: Aphididae): An evolutionary hypothesis for the Pterocomma-group habitat adaptation.

Choi H, Shin S, Jung S, Clarke DJ, Lee S.

Mol Phylogenet Evol. 2018 Apr;121:12-22. doi: 10.1016/j.ympev.2017.12.021. Epub 2017 Dec 15.


Monitoring the DNA Topoisomerase II Checkpoint in Saccharomyces cerevisiae.

Furniss K, Vas ACJ, Lane AB, Clarke DJ.

Methods Mol Biol. 2018;1703:217-240. doi: 10.1007/978-1-4939-7459-7_16.


Analyzing Mitotic Chromosome Structural Defects After Topoisomerase II Inhibition or Mutation.

Giménez-Abián JF, Lane AB, Clarke DJ.

Methods Mol Biol. 2018;1703:191-215. doi: 10.1007/978-1-4939-7459-7_15.


Non-Catalytic Roles of the Topoisomerase IIα C-Terminal Domain.

Clarke DJ, Azuma Y.

Int J Mol Sci. 2017 Nov 17;18(11). pii: E2438. doi: 10.3390/ijms18112438. Review.


Disciplinary power and the process of training informal carers on stroke units.

Sadler E, Hawkins R, Clarke DJ, Godfrey M, Dickerson J, McKevitt C.

Sociol Health Illn. 2018 Jan;40(1):100-114. doi: 10.1111/1467-9566.12625. Epub 2017 Oct 26.


The Bacteroidales produce an N-acylated derivative of glycine with both cholesterol-solubilising and hemolytic activity.

Lynch A, Crowley E, Casey E, Cano R, Shanahan R, McGlacken G, Marchesi JR, Clarke DJ.

Sci Rep. 2017 Oct 16;7(1):13270. doi: 10.1038/s41598-017-13774-6.


MCPH1, mutated in primary microcephaly, is required for efficient chromosome alignment during mitosis.

Arroyo M, Kuriyama R, Trimborn M, Keifenheim D, Cañuelo A, Sánchez A, Clarke DJ, Marchal JA.

Sci Rep. 2017 Oct 12;7(1):13019. doi: 10.1038/s41598-017-12793-7.


Genetic deletion of P-glycoprotein alters stress responsivity and increases depression-like behavior, social withdrawal and microglial activation in the hippocampus of female mice.

Brzozowska NI, Smith KL, Zhou C, Waters PM, Cavalcante LM, Abelev SV, Kuligowski M, Clarke DJ, Todd SM, Arnold JC.

Brain Behav Immun. 2017 Oct;65:251-261. doi: 10.1016/j.bbi.2017.05.008. Epub 2017 May 10.


HexA is a versatile regulator involved in the control of phenotypic heterogeneity of Photorhabdus luminescens.

Langer A, Moldovan A, Harmath C, Joyce SA, Clarke DJ, Heermann R.

PLoS One. 2017 Apr 27;12(4):e0176535. doi: 10.1371/journal.pone.0176535. eCollection 2017.


Light losses from scattering in luminescent solar concentrator waveguides.

Breukers RD, Smith GJ, Stirrat HL, Swanson AJ, Smith TA, Ghiggino KP, Raymond SG, Winch NM, Clarke DJ, Kay AJ.

Appl Opt. 2017 Apr 1;56(10):2630-2635. doi: 10.1364/AO.56.002630.


Cell surface damage activates a cell cycle checkpoint (comment on DOI: 10.1002/bies.201600210).

Clarke DJ.

Bioessays. 2017 Apr;39(4). doi: 10.1002/bies.201700022. Epub 2017 Mar 7. No abstract available.


Interactive van Krevelen diagrams - Advanced visualisation of mass spectrometry data of complex mixtures.

Kew W, Blackburn JW, Clarke DJ, Uhrín D.

Rapid Commun Mass Spectrom. 2017 Apr 15;31(7):658-662. doi: 10.1002/rcm.7823. No abstract available.


Interactions between cannabidiol and Δ9-THC following acute and repeated dosing: Rebound hyperactivity, sensorimotor gating and epigenetic and neuroadaptive changes in the mesolimbic pathway.

Todd SM, Zhou C, Clarke DJ, Chohan TW, Bahceci D, Arnold JC.

Eur Neuropsychopharmacol. 2017 Feb;27(2):132-145. doi: 10.1016/j.euroneuro.2016.12.004. Epub 2016 Dec 31.


Autopiquer - a Robust and Reliable Peak Detection Algorithm for Mass Spectrometry.

Kilgour DPA, Hughes S, Kilgour SL, Mackay CL, Palmblad M, Tran BQ, Goo YA, Ernst RK, Clarke DJ, Goodlett DR.

J Am Soc Mass Spectrom. 2017 Feb;28(2):253-262. doi: 10.1007/s13361-016-1549-z. Epub 2016 Dec 6.


Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface.

McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, Calla B, Chao H, Childers AK, Childers C, Clarke DJ, Cohen L, Demuth JP, Dinh H, Doddapaneni H, Dolan A, Duan JJ, Dugan S, Friedrich M, Glastad KM, Goodisman MA, Haddad S, Han Y, Hughes DS, Ioannidis P, Johnston JS, Jones JW, Kuhn LA, Lance DR, Lee CY, Lee SL, Lin H, Lynch JA, Moczek AP, Murali SC, Muzny DM, Nelson DR, Palli SR, Panfilio KA, Pers D, Poelchau MF, Quan H, Qu J, Ray AM, Rinehart JP, Robertson HM, Roehrdanz R, Rosendale AJ, Shin S, Silva C, Torson AS, Jentzsch IM, Werren JH, Worley KC, Yocum G, Zdobnov EM, Gibbs RA, Richards S.

Genome Biol. 2016 Nov 11;17(1):227.


Characterization of homologous sphingosine-1-phosphate lyase isoforms in the bacterial pathogen Burkholderia pseudomallei.

McLean CJ, Marles-Wright J, Custodio R, Lowther J, Kennedy AJ, Pollock J, Clarke DJ, Brown AR, Campopiano DJ.

J Lipid Res. 2017 Jan;58(1):137-150. doi: 10.1194/jlr.M071258. Epub 2016 Oct 26.


IL-1β-Induced Protection of Keratinocytes against Staphylococcus aureus-Secreted Proteases Is Mediated by Human β-Defensin 2.

Wang B, McHugh BJ, Qureshi A, Campopiano DJ, Clarke DJ, Fitzgerald JR, Dorin JR, Weller R, Davidson DJ.

J Invest Dermatol. 2017 Jan;137(1):95-105. doi: 10.1016/j.jid.2016.08.025. Epub 2016 Oct 1.


Characterization of secreted sphingosine-1-phosphate lyases required for virulence and intracellular survival of Burkholderia pseudomallei.

Custódio R, McLean CJ, Scott AE, Lowther J, Kennedy A, Clarke DJ, Campopiano DJ, Sarkar-Tyson M, Brown AR.

Mol Microbiol. 2016 Dec;102(6):1004-1019. doi: 10.1111/mmi.13531. Epub 2016 Sep 26.


Structural characterization of encapsulated ferritin provides insight into iron storage in bacterial nanocompartments.

He D, Hughes S, Vanden-Hehir S, Georgiev A, Altenbach K, Tarrant E, Mackay CL, Waldron KJ, Clarke DJ, Marles-Wright J.

Elife. 2016 Aug 16;5. pii: e18972. doi: 10.7554/eLife.18972.


Endocannabinoid dysregulation in cognitive and stress-related brain regions in the Nrg1 mouse model of schizophrenia.

Clarke DJ, Stuart J, McGregor IS, Arnold JC.

Prog Neuropsychopharmacol Biol Psychiatry. 2017 Jan 4;72:9-15. doi: 10.1016/j.pnpbp.2016.08.006. Epub 2016 Aug 10.


The Regulation of Secondary Metabolism in Photorhabdus.

Clarke DJ.

Curr Top Microbiol Immunol. 2017;402:81-102. doi: 10.1007/82_2016_21.


A noncatalytic function of the topoisomerase II CTD in Aurora B recruitment to inner centromeres during mitosis.

Edgerton H, Johansson M, Keifenheim D, Mukherjee S, Chacón JM, Bachant J, Gardner MK, Clarke DJ.

J Cell Biol. 2016 Jun 20;213(6):651-64. doi: 10.1083/jcb.201511080.

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