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Items: 1 to 50 of 127

1.

Phenomics reveals a novel putative chloroplast fatty acid transporter in the marine diatom Skeletonema marinoi involved in temperature acclimation.

Johansson ON, Töpel M, Egardt J, Pinder MIM, Andersson MX, Godhe A, Clarke AK.

Sci Rep. 2019 Oct 22;9(1):15143. doi: 10.1038/s41598-019-51683-y.

2.

Whole Genome Sequence of Marinobacter salarius Strain SMR5, Shown to Promote Growth in its Diatom Host.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

J Genomics. 2019 Oct 1;7:60-63. doi: 10.7150/jgen.39039. eCollection 2019.

3.

Friends With Benefits: Exploring the Phycosphere of the Marine Diatom Skeletonema marinoi.

Johansson ON, Pinder MIM, Ohlsson F, Egardt J, Töpel M, Clarke AK.

Front Microbiol. 2019 Aug 6;10:1828. doi: 10.3389/fmicb.2019.01828. eCollection 2019.

4.

Complete Genome Sequence of the Diatom-Associated Bacterium Sphingorhabdus sp. Strain SMR4y.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

Microbiol Resour Announc. 2019 Jul 18;8(29). pii: e00482-19. doi: 10.1128/MRA.00482-19.

5.

Genome Sequence of Kordia sp. Strain SMS9 Identified in a Non-Axenic Culture of the Diatom Skeletonema marinoi.

Pinder MIM, Johansson ON, Almstedt A, Kourtchenko O, Clarke AK, Godhe A, Töpel M.

J Genomics. 2019 May 9;7:46-49. doi: 10.7150/jgen.35061. eCollection 2019.

6.

Skeletonema marinoi as a new genetic model for marine chain-forming diatoms.

Johansson ON, Töpel M, Pinder MIM, Kourtchenko O, Blomberg A, Godhe A, Clarke AK.

Sci Rep. 2019 Apr 2;9(1):5391. doi: 10.1038/s41598-019-41085-5.

7.

Indole Synthesis Using Silver Catalysis.

Clarke AK, Ho HE, Rossi-Ashton JA, Taylor RJK, Unsworth WP.

Chem Asian J. 2019 Jun 3;14(11):1900-1911. doi: 10.1002/asia.201900309. Epub 2019 Apr 25. Review.

PMID:
30908897
8.

Complete Genome Sequence of Novel Sulfitobacter pseudonitzschiae Strain SMR1, Isolated from a Culture of the Marine Diatom Skeletonema marinoi.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Clarke AK, Godhe A.

J Genomics. 2019 Jan 1;7:7-10. doi: 10.7150/jgen.30559. eCollection 2019.

9.

Genome Sequence of Arenibacter algicola Strain SMS7, Found in Association with the Marine Diatom Skeletonema marinoi.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

Microbiol Resour Announc. 2019 Jan 10;8(2). pii: e01461-18. doi: 10.1128/MRA.01461-18. eCollection 2019 Jan.

10.

Analysis of Retinal Segmentation Changes at High Altitude With and Without Acetazolamide.

Clarke AK, Cozzi M, Imray CHE, Wright A, Pagliarini S; Birmingham Medical Research Expeditionary Society.

Invest Ophthalmol Vis Sci. 2019 Jan 2;60(1):36-40. doi: 10.1167/iovs.18-24966.

PMID:
30601929
11.

Whole-Genome Sequence of the Novel Antarctobacter heliothermus Strain SMS3, Found in Association with the Marine Diatom Skeletonema marinoi.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

J Genomics. 2018 Sep 4;6:113-116. doi: 10.7150/jgen.27637. eCollection 2018.

12.

Complete Genome Sequence of Loktanella vestfoldensis Strain SMR4r, a Novel Strain Isolated from a Culture of the Chain-Forming Diatom Skeletonema marinoi.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

Genome Announc. 2018 Mar 22;6(12). pii: e01558-17. doi: 10.1128/genomeA.01558-17.

13.

Oral cancer screening practices of Canadian dental hygienists.

Clarke AK, Kobagi N, Yoon MN.

Int J Dent Hyg. 2018 May;16(2):e38-e45. doi: 10.1111/idh.12295. Epub 2017 Jun 23.

PMID:
28643363
14.

Genome Sequence of Roseovarius mucosus Strain SMR3, Isolated from a Culture of the Diatom Skeletonema marinoi.

Töpel M, Pinder MIM, Johansson ON, Kourtchenko O, Godhe A, Clarke AK.

Genome Announc. 2017 Jun 1;5(22). pii: e00394-17. doi: 10.1128/genomeA.00394-17.

15.

Preparation and Reactions of Indoleninyl Halides: Scaffolds for the Synthesis of Spirocyclic Indole Derivatives.

Liddon JT, Clarke AK, Taylor RJ, Unsworth WP.

Org Lett. 2016 Dec 16;18(24):6328-6331. Epub 2016 Nov 28.

16.

Dearomatisation approaches to spirocyclic dienones via the electrophilic activation of alkynes.

Clarke AK, Liddon JT, Cuthbertson JD, Taylor RJ, Unsworth WP.

Org Biomol Chem. 2016 Dec 20;15(1):233-245.

17.

Silica-Supported Silver Nitrate as a Highly Active Dearomatizing Spirocyclization Catalyst: Synergistic Alkyne Activation by Silver Nanoparticles and Silica.

Clarke AK, James MJ, O'Brien P, Taylor RJ, Unsworth WP.

Angew Chem Int Ed Engl. 2016 Oct 24;55(44):13798-13802. doi: 10.1002/anie.201608263. Epub 2016 Sep 30.

18.

Catalyst-Driven Scaffold Diversity: Selective Synthesis of Spirocycles, Carbazoles and Quinolines from Indolyl Ynones.

Liddon JT, James MJ, Clarke AK, O'Brien P, Taylor RJ, Unsworth WP.

Chemistry. 2016 Jun 20;22(26):8777-80. doi: 10.1002/chem.201601836. Epub 2016 May 19.

19.

Peer-led live research demonstrations: challenging medical student misconceptions about research.

O'Connor S, Clarke AK.

Perspect Med Educ. 2016 Feb;5(1):60-2. doi: 10.1007/s40037-015-0239-z.

20.

Characterization of ClpS2, an essential adaptor protein for the cyanobacterium Synechococcus elongatus.

Tryggvesson A, Ståhlberg FM, Töpel M, Tanabe N, Mogk A, Clarke AK.

FEBS Lett. 2015 Dec 21;589(24 Pt B):4039-46. doi: 10.1016/j.febslet.2015.11.026. Epub 2015 Nov 24.

21.

Functional Analysis of the Hsp93/ClpC Chaperone at the Chloroplast Envelope.

Flores-Pérez Ú, Bédard J, Tanabe N, Lymperopoulos P, Clarke AK, Jarvis P.

Plant Physiol. 2016 Jan;170(1):147-62. doi: 10.1104/pp.15.01538. Epub 2015 Nov 19.

22.

Dual stoichiometry and subunit organization in the ClpP1/P2 protease from the cyanobacterium Synechococcus elongatus.

Mikhailov VA, Ståhlberg F, Clarke AK, Robinson CV.

J Struct Biol. 2015 Dec;192(3):519-527. doi: 10.1016/j.jsb.2015.10.016. Epub 2015 Oct 23.

23.

Quantitative analysis of the chloroplast molecular chaperone ClpC/Hsp93 in Arabidopsis reveals new insights into its localization, interaction with the Clp proteolytic core, and functional importance.

Sjögren LL, Tanabe N, Lymperopoulos P, Khan NZ, Rodermel SR, Aronsson H, Clarke AK.

J Biol Chem. 2014 Apr 18;289(16):11318-30. doi: 10.1074/jbc.M113.534552. Epub 2014 Mar 5.

24.

The B-box family gene STO (BBX24) in Arabidopsis thaliana regulates flowering time in different pathways.

Li F, Sun J, Wang D, Bai S, Clarke AK, Holm M.

PLoS One. 2014 Feb 3;9(2):e87544. doi: 10.1371/journal.pone.0087544. eCollection 2014.

25.

Same temporal niche, opposite rhythmicity: two closely related bioluminescent insects with opposite bioluminesce propensity rhythms.

Merritt DJ, Rodgers EM, Amir AF, Clarke AK.

Chronobiol Int. 2012 Dec;29(10):1336-44. doi: 10.3109/07420528.2012.728549. Epub 2012 Nov 6.

PMID:
23130886
26.

Interaction specificity between the chaperone and proteolytic components of the cyanobacterial Clp protease.

Tryggvesson A, Ståhlberg FM, Mogk A, Zeth K, Clarke AK.

Biochem J. 2012 Sep 1;446(2):311-20. doi: 10.1042/BJ20120649.

PMID:
22657732
27.

The chloroplast ATP-dependent Clp protease in vascular plants - new dimensions and future challenges.

Clarke AK.

Physiol Plant. 2012 May;145(1):235-44. doi: 10.1111/j.1399-3054.2011.01541.x. Epub 2011 Dec 15. Review.

PMID:
22085372
28.

Studying proteases and protein turnover in Arabidopsis chloroplasts.

Sjögren LL, Clarke AK.

Methods Mol Biol. 2011;774:225-40. doi: 10.1007/978-1-61779-234-2_15.

PMID:
21822843
29.

Assembly of the chloroplast ATP-dependent Clp protease in Arabidopsis is regulated by the ClpT accessory proteins.

Sjögren LL, Clarke AK.

Plant Cell. 2011 Jan;23(1):322-32. doi: 10.1105/tpc.110.082321. Epub 2011 Jan 25.

30.

Synchronized circadian bioluminescence in cave-dwelling Arachnocampa tasmaniensis (Glowworms).

Merritt DJ, Clarke AK.

J Biol Rhythms. 2011 Feb;26(1):34-43. doi: 10.1177/0748730410391947.

PMID:
21252364
31.

'happy on norflurazon' (hon) mutations implicate perturbance of plastid homeostasis with activating stress acclimatization and changing nuclear gene expression in norflurazon-treated seedlings.

Saini G, Meskauskiene R, Pijacka W, Roszak P, Sjögren LL, Clarke AK, Straus M, Apel K.

Plant J. 2011 Mar;65(5):690-702. doi: 10.1111/j.1365-313X.2010.04454.x. Epub 2011 Jan 5.

32.

The influence of stereotypical beliefs, participant gender, and survivor weight on sexual assault response.

Clarke AK, Stermac L.

J Interpers Violence. 2011 Jul;26(11):2285-302. doi: 10.1177/0886260510383039. Epub 2010 Oct 18.

PMID:
20956441
33.
34.

A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol in tolerant periphyton communities.

Eriksson KM, Antonelli A, Nilsson RH, Clarke AK, Blanck H.

Environ Microbiol. 2009 Aug;11(8):2065-77. doi: 10.1111/j.1462-2920.2009.01928.x. Epub 2009 Apr 29.

PMID:
19453608
35.

Structure and function of a novel type of ATP-dependent Clp protease.

Andersson FI, Tryggvesson A, Sharon M, Diemand AV, Classen M, Best C, Schmidt R, Schelin J, Stanne TM, Bukau B, Robinson CV, Witt S, Mogk A, Clarke AK.

J Biol Chem. 2009 May 15;284(20):13519-32. doi: 10.1074/jbc.M809588200. Epub 2009 Feb 23.

36.

Community-level analysis of psbA gene sequences and irgarol tolerance in marine periphyton.

Eriksson KM, Clarke AK, Franzen LG, Kuylenstierna M, Martinez K, Blanck H.

Appl Environ Microbiol. 2009 Feb;75(4):897-906. doi: 10.1128/AEM.01830-08. Epub 2008 Dec 16.

37.

Identification of new protein substrates for the chloroplast ATP-dependent Clp protease supports its constitutive role in Arabidopsis.

Stanne TM, Sjögren LL, Koussevitzky S, Clarke AK.

Biochem J. 2009 Jan 1;417(1):257-68. doi: 10.1042/BJ20081146.

PMID:
18754756
38.

Distinctive types of ATP-dependent Clp proteases in cyanobacteria.

Stanne TM, Pojidaeva E, Andersson FI, Clarke AK.

J Biol Chem. 2007 May 11;282(19):14394-402. Epub 2007 Mar 19.

39.

The chloroplast protease subunit ClpP4 is a substrate of the E3 ligase AtCHIP and plays an important role in chloroplast function.

Shen G, Yan J, Pasapula V, Luo J, He C, Clarke AK, Zhang H.

Plant J. 2007 Jan;49(2):228-37.

40.

An Arabidopsis thaliana virescent mutant reveals a role for ClpR1 in plastid development.

Koussevitzky S, Stanne TM, Peto CA, Giap T, Sjögren LL, Zhao Y, Clarke AK, Chory J.

Plant Mol Biol. 2007 Jan;63(1):85-96. Epub 2006 Sep 29.

PMID:
17009084
41.

Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis.

Sjögren LL, Stanne TM, Zheng B, Sutinen S, Clarke AK.

Plant Cell. 2006 Oct;18(10):2635-49. Epub 2006 Sep 15.

42.

A nuclear-encoded ClpP subunit of the chloroplast ATP-dependent Clp protease is essential for early development in Arabidopsis thaliana.

Zheng B, MacDonald TM, Sutinen S, Hurry V, Clarke AK.

Planta. 2006 Oct;224(5):1103-15. Epub 2006 May 17.

PMID:
16705403
43.

Cyanobacterial ClpC/HSP100 protein displays intrinsic chaperone activity.

Andersson FI, Blakytny R, Kirstein J, Turgay K, Bukau B, Mogk A, Clarke AK.

J Biol Chem. 2006 Mar 3;281(9):5468-75. Epub 2005 Dec 16.

45.

Chlorosis during nitrogen starvation is altered by carbon dioxide and temperature status and is mediated by the ClpP1 protease in Synechococcus elongatus.

Barker-Aström K, Schelin J, Gustafsson P, Clarke AK, Campbell DA.

Arch Microbiol. 2005 Jan;183(1):66-9. Epub 2004 Nov 11.

PMID:
15549267
46.

Methotrexate and bone marrow suppression: standard collaborative care will be made more difficult.

Clarke AK.

BMJ. 2003 May 24;326(7399):1145; author reply 1145-6. No abstract available.

47.

Cutting edge of chloroplast proteolysis.

Adam Z, Clarke AK.

Trends Plant Sci. 2002 Oct;7(10):451-6. Review.

PMID:
12399180
48.

The clpP multigene family for the ATP-dependent Clp protease in the cyanobacterium Synechococcus.

Schelin J, Lindmark F, Clarke AK.

Microbiology. 2002 Jul;148(Pt 7):2255-65.

PMID:
12101312
49.

Characterization of Chloroplast Clp proteins in Arabidopsis: Localization, tissue specificity and stress responses.

Zheng B, Halperin T, Hruskova-Heidingsfeldova O, Adam Z, Clarke AK.

Physiol Plant. 2002 Jan;114(1):92-101.

PMID:
11982939
50.

The debate regarding continuous use of oral contraceptives.

Clarke AK, Miller SJ.

Ann Pharmacother. 2001 Nov;35(11):1480-4. Review.

PMID:
11724103

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