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Items: 1 to 50 of 193

1.

Predicted impacts of climate warming on aerobic performance and upper thermal tolerance of six tropical freshwater fishes spanning three continents.

Lapointe D, Cooperman MS, Chapman LJ, Clark TD, Val AL, Ferreira MS, Balirwa JS, Mbabazi D, Mwanja M, Chhom L, Hannah L, Kaufman L, Farrell AP, Cooke SJ.

Conserv Physiol. 2018 Oct 15;6(1):coy056. doi: 10.1093/conphys/coy056. eCollection 2018.

2.

High-performance nanomaterials formed by rigid yet extensible cyclic β-peptide polymers.

Fears KP, Kolel-Veetil MK, Barlow DE, Bernstein N, So CR, Wahl KJ, Li X, Kulp JL 3rd, Latour RA, Clark TD.

Nat Commun. 2018 Oct 5;9(1):4090. doi: 10.1038/s41467-018-06576-5.

3.

Mobile, Population-wide, Hybrid HIV Testing Strategy Increases Number of Children Tested in Rural Kenya and Uganda.

Ayieko J, Chamie G, Balzer L, Kwarisiima D, Kabami J, Sang N, Cohen CR, Bukusi EA, Clark TD, Plenty A, Charlebois ED, Petersen M, Kamya M, Havlir DV, Ruel T.

Pediatr Infect Dis J. 2018 Dec;37(12):1279-1281. doi: 10.1097/INF.0000000000002142.

PMID:
30199482
4.

"Hurdles on the path to 90-90-90 and beyond": Qualitative analysis of barriers to engagement in HIV care among individuals in rural East Africa in the context of test-and-treat.

Ayieko J, Brown L, Anthierens S, Van Rie A, Getahun M, Charlebois ED, Petersen ML, Clark TD, Kamya MR, Cohen CR, Bukusi EA, Havlir DV, Camlin CS.

PLoS One. 2018 Aug 30;13(8):e0202990. doi: 10.1371/journal.pone.0202990. eCollection 2018.

5.

Costs of streamlined HIV care delivery in rural Ugandan and Kenyan clinics in the SEARCH Studys.

Shade SB, Osmand T, Luo A, Aine R, Assurah E, Mwebaza B, Mwai D, Owaraganise A, Mwangwa F, Ayieko J, Black D, Brown LB, Clark TD, Kwarisiima D, Thirumurthy H, Cohen CR, Bukusi EA, Charlebois ED, Balzer L, Kamya MR, Petersen ML, Havlir DV, Jain V.

AIDS. 2018 Sep 24;32(15):2179-2188. doi: 10.1097/QAD.0000000000001958.

6.

Dihydroartemisinin-piperaquine for intermittent preventive treatment of malaria during pregnancy and risk of malaria in early childhood: A randomized controlled trial.

Jagannathan P, Kakuru A, Okiring J, Muhindo MK, Natureeba P, Nakalembe M, Opira B, Olwoch P, Nankya F, Ssewanyana I, Tetteh K, Drakeley C, Beeson J, Reiling L, Clark TD, Rodriguez-Barraquer I, Greenhouse B, Wallender E, Aweeka F, Prahl M, Charlebois ED, Feeney ME, Havlir DV, Kamya MR, Dorsey G.

PLoS Med. 2018 Jul 17;15(7):e1002606. doi: 10.1371/journal.pmed.1002606. eCollection 2018 Jul.

7.

Effect of a Patient-Centered Phone Call by a Clinical Officer at Time of HIV Testing on Linkage to Care in Rural Kenya.

Ayieko J, Petersen ML, van Rie A, Wafula E, Opudo W, Clark TD, Kamya MR, Balzer LB, Cohen CR, Bukusi EA, Charlebois ED, Havlir DV.

Open Forum Infect Dis. 2018 May 29;5(6):ofy126. doi: 10.1093/ofid/ofy126. eCollection 2018 Jun 1.

8.

Exposure to elevated carbon dioxide does not impair short-term swimming behaviour or shelter-seeking in a predatory coral-reef fish.

Raby GD, Sundin J, Jutfelt F, Cooke SJ, Clark TD.

J Fish Biol. 2018 Jul;93(1):138-142. doi: 10.1111/jfb.13728.

PMID:
29931691
9.

Early Adopters of HIV Preexposure Prophylaxis in a Population-based Combination Prevention Study in Rural Kenya and Uganda.

Koss CA, Ayieko J, Mwangwa F, Owaraganise A, Kwarisiima D, Balzer LB, Plenty A, Sang N, Kabami J, Ruel TD, Black D, Camlin CS, Cohen CR, Bukusi EA, Clark TD, Charlebois ED, Petersen ML, Kamya MR, Havlir DV; SEARCH study.

Clin Infect Dis. 2018 May 5. doi: 10.1093/cid/ciy390. [Epub ahead of print]

PMID:
29741594
10.

Intermittent Preventive Treatment for Malaria in Pregnancy: Optimization of Target Concentrations of Dihydroartemisinin-Piperaquine.

Savic RM, Jagannathan P, Kajubi R, Huang L, Zhang N, Were M, Kakuru A, Muhindo MK, Mwebaza N, Wallender E, Clark TD, Opira B, Kamya M, Havlir DV, Rosenthal PJ, Dorsey G, Aweeka FT.

Clin Infect Dis. 2018 Sep 14;67(7):1079-1088. doi: 10.1093/cid/ciy218.

PMID:
29547881
11.

Negligible differences in metabolism and thermal tolerance between diploid and triploid Atlantic salmon (Salmo salar).

Bowden AJ, Andrewartha SJ, Elliott NG, Frappell PB, Clark TD.

J Exp Biol. 2018 Mar 13;221(Pt 5). pii: jeb166975. doi: 10.1242/jeb.166975.

12.

Oxygen- and capacity-limited thermal tolerance: blurring ecology and physiology.

Jutfelt F, Norin T, Ern R, Overgaard J, Wang T, McKenzie DJ, Lefevre S, Nilsson GE, Metcalfe NB, Hickey AJR, Brijs J, Speers-Roesch B, Roche DG, Gamperl AK, Raby GD, Morgan R, Esbaugh AJ, Gräns A, Axelsson M, Ekström A, Sandblom E, Binning SA, Hicks JW, Seebacher F, Jørgensen C, Killen SS, Schulte PM, Clark TD.

J Exp Biol. 2018 Jan 10;221(Pt 1). pii: jeb169615. doi: 10.1242/jeb.169615. No abstract available.

13.

Gaps in the Child Tuberculosis Care Cascade in 32 Rural Communities in Uganda and Kenya.

Mwangwa F, Chamie G, Kwarisiima D, Ayieko J, Owaraganise A, Ruel TD, Plenty A, Tram KH, Clark TD, Cohen CR, Bukusi EA, Petersen M, Kamya MR, Charlebois ED, Havlir DV, Marquez C.

J Clin Tuberc Other Mycobact Dis. 2017 Dec;9:24-29. doi: 10.1016/j.jctube.2017.10.003.

PMID:
29291251
14.

Redemption of the "spoiled identity:" the role of HIV-positive individuals in HIV care cascade interventions.

Camlin CS, Charlebois ED, Geng E, Semitala F, Wallenta J, Getahun M, Kampiire L, Bukusi EA, Sang N, Kwarisiima D, Clark TD, Petersen ML, Kamya MR, Havlir DV.

J Int AIDS Soc. 2017 Dec;20(4). doi: 10.1002/jia2.25023.

15.

Baseline and stress-induced blood properties of male and female Darwin's small ground finch (Geospiza fuliginosa) of the Galapagos Islands.

Clark TD, Kleindorfer S, Dudaniec RY.

Gen Comp Endocrinol. 2018 Apr 1;259:199-206. doi: 10.1016/j.ygcen.2017.11.026. Epub 2017 Nov 29.

PMID:
29197554
16.

Protective Effect of Indoor Residual Spraying of Insecticide on Preterm Birth Among Pregnant Women With HIV Infection in Uganda: A Secondary Data Analysis.

Roh ME, Shiboski S, Natureeba P, Kakuru A, Muhindo M, Ochieng T, Plenty A, Koss CA, Clark TD, Awori P, Nakalambe M, Cohan D, Jagannathan P, Gosling R, Havlir DV, Kamya MR, Dorsey G.

J Infect Dis. 2017 Dec 19;216(12):1541-1549. doi: 10.1093/infdis/jix533.

PMID:
29029337
17.

Relationships between infection with Plasmodium falciparum during pregnancy, measures of placental malaria, and adverse birth outcomes.

Kapisi J, Kakuru A, Jagannathan P, Muhindo MK, Natureeba P, Awori P, Nakalembe M, Ssekitoleko R, Olwoch P, Ategeka J, Nayebare P, Clark TD, Rizzuto G, Muehlenbachs A, Havlir DV, Kamya MR, Dorsey G, Gaw SL.

Malar J. 2017 Oct 5;16(1):400. doi: 10.1186/s12936-017-2040-4.

18.

Fish face a trade-off between 'eating big' for growth efficiency and 'eating small' to retain aerobic capacity.

Norin T, Clark TD.

Biol Lett. 2017 Sep;13(9). pii: 20170298. doi: 10.1098/rsbl.2017.0298.

19.

Isoniazid Preventive Therapy Completion in the Era of Differentiated HIV Care.

Tram KH, Mwangwa F, Atukunda M, Owaraganise A, Ayieko J, Plenty A, Kwariisima D, Clark TD, Petersen ML, Charlebois ED, Kamya MR, Chamie G, Havlir DV, Marquez C; SEARCH Collaboration.

J Acquir Immune Defic Syndr. 2017 Dec 15;76(5):e115-e117. doi: 10.1097/QAI.0000000000001540. No abstract available.

PMID:
28885271
20.

An introduction to the Special Issue: "OCLTT: a universal concept?"

Clark TD, Mark FC.

J Therm Biol. 2017 Aug;68(Pt B):147-148. doi: 10.1016/j.jtherbio.2017.08.003. No abstract available.

PMID:
28797474
21.

Reply to Zhang & Gilbert (2017): Comment on 'Measurement and relevance of maximum metabolic rate in fishes by Norin & Clark (2016)'.

Norin T, Clark TD.

J Fish Biol. 2017 Aug;91(2):403-408. doi: 10.1111/jfb.13353. No abstract available.

PMID:
28776704
22.

High rates of viral suppression in adults and children with high CD4+ counts using a streamlined ART delivery model in the SEARCH trial in rural Uganda and Kenya.

Kwarisiima D, Kamya MR, Owaraganise A, Mwangwa F, Byonanebye DM, Ayieko J, Plenty A, Black D, Clark TD, Nzarubara B, Snyman K, Brown L, Bukusi E, Cohen CR, Geng EH, Charlebois ED, Ruel TD, Petersen ML, Havlir D, Jain V.

J Int AIDS Soc. 2017 Jul 21;20(Suppl 4):21673. doi: 10.7448/IAS.20.5.21673.

23.

Maximum thermal limits of coral reef damselfishes are size dependent and resilient to near-future ocean acidification.

Clark TD, Roche DG, Binning SA, Speers-Roesch B, Sundin J.

J Exp Biol. 2017 Oct 1;220(Pt 19):3519-3526. doi: 10.1242/jeb.162529. Epub 2017 Jul 28.

24.

Long-term exposure to elevated carbon dioxide does not alter activity levels of a coral reef fish in response to predator chemical cues.

Sundin J, Amcoff M, Mateos-González F, Raby GD, Jutfelt F, Clark TD.

Behav Ecol Sociobiol. 2017;71(8):108. doi: 10.1007/s00265-017-2337-x. Epub 2017 Jul 5.

25.

Association of Implementation of a Universal Testing and Treatment Intervention With HIV Diagnosis, Receipt of Antiretroviral Therapy, and Viral Suppression in East Africa.

Petersen M, Balzer L, Kwarsiima D, Sang N, Chamie G, Ayieko J, Kabami J, Owaraganise A, Liegler T, Mwangwa F, Kadede K, Jain V, Plenty A, Brown L, Lavoy G, Schwab J, Black D, van der Laan M, Bukusi EA, Cohen CR, Clark TD, Charlebois E, Kamya M, Havlir D.

JAMA. 2017 Jun 6;317(21):2196-2206. doi: 10.1001/jama.2017.5705.

26.

Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science.

Bonebrake TC, Brown CJ, Bell JD, Blanchard JL, Chauvenet A, Champion C, Chen IC, Clark TD, Colwell RK, Danielsen F, Dell AI, Donelson JM, Evengård B, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Jarzyna MA, Lee E, Lenoir J, Linnetved H, Martin VY, McCormack PC, McDonald J, McDonald-Madden E, Mitchell N, Mustonen T, Pandolfi JM, Pettorelli N, Possingham H, Pulsifer P, Reynolds M, Scheffers BR, Sorte CJB, Strugnell JM, Tuanmu MN, Twiname S, Vergés A, Villanueva C, Wapstra E, Wernberg T, Pecl GT.

Biol Rev Camb Philos Soc. 2018 Feb;93(1):284-305. doi: 10.1111/brv.12344. Epub 2017 Jun 1.

PMID:
28568902
27.

Developmental Hypoxia Has Negligible Effects on Long-Term Hypoxia Tolerance and Aerobic Metabolism of Atlantic Salmon (Salmo salar).

Wood AT, Clark TD, Andrewartha SJ, Elliott NG, Frappell PB.

Physiol Biochem Zool. 2017 Jul/Aug;90(4):494-501. doi: 10.1086/692250.

PMID:
28459654
28.

Biodiversity redistribution under climate change: Impacts on ecosystems and human well-being.

Pecl GT, Araújo MB, Bell JD, Blanchard J, Bonebrake TC, Chen IC, Clark TD, Colwell RK, Danielsen F, Evengård B, Falconi L, Ferrier S, Frusher S, Garcia RA, Griffis RB, Hobday AJ, Janion-Scheepers C, Jarzyna MA, Jennings S, Lenoir J, Linnetved HI, Martin VY, McCormack PC, McDonald J, Mitchell NJ, Mustonen T, Pandolfi JM, Pettorelli N, Popova E, Robinson SA, Scheffers BR, Shaw JD, Sorte CJ, Strugnell JM, Sunday JM, Tuanmu MN, Vergés A, Villanueva C, Wernberg T, Wapstra E, Williams SE.

Science. 2017 Mar 31;355(6332). pii: eaai9214. doi: 10.1126/science.aai9214. Review.

PMID:
28360268
29.

Intermittent Preventive Treatment With Dihydroartemisinin-Piperaquine for the Prevention of Malaria Among HIV-Infected Pregnant Women.

Natureeba P, Kakuru A, Muhindo M, Ochieng T, Ategeka J, Koss CA, Plenty A, Charlebois ED, Clark TD, Nzarubara B, Nakalembe M, Cohan D, Rizzuto G, Muehlenbachs A, Ruel T, Jagannathan P, Havlir DV, Kamya MR, Dorsey G.

J Infect Dis. 2017 Jul 1;216(1):29-35. doi: 10.1093/infdis/jix110.

30.

Science, lies and video-taped experiments.

Clark TD.

Nature. 2017 Feb 7;542(7640):139. doi: 10.1038/542139a. No abstract available.

PMID:
28179685
31.

Rising temperatures may drive fishing-induced selection of low-performance phenotypes.

Clark TD, Messmer V, Tobin AJ, Hoey AS, Pratchett MS.

Sci Rep. 2017 Jan 17;7:40571. doi: 10.1038/srep40571.

32.

Population levels and geographical distribution of HIV RNA in rural Ugandan and Kenyan communities, including serodiscordant couples: a cross-sectional analysis.

Jain V, Petersen ML, Liegler T, Byonanebye DM, Kwarisiima D, Chamie G, Sang N, Black D, Clark TD, Ladai A, Plenty A, Kabami J, Ssemmondo E, Bukusi EA, Cohen CR, Charlebois ED, Kamya MR, Havlir DV; SEARCH Collaboration.

Lancet HIV. 2017 Mar;4(3):e122-e133. doi: 10.1016/S2352-3018(16)30220-X. Epub 2016 Dec 16. Erratum in: Lancet HIV. 2017 Mar;4(3):e102.

33.

Viral Suppression and Retention in Care up to 5 Years After Initiation of Lifelong ART During Pregnancy (Option B+) in Rural Uganda.

Koss CA, Natureeba P, Kwarisiima D, Ogena M, Clark TD, Olwoch P, Cohan D, Okiring J, Charlebois ED, Kamya MR, Havlir DV.

J Acquir Immune Defic Syndr. 2017 Mar 1;74(3):279-284. doi: 10.1097/QAI.0000000000001228.

34.

Global warming may disproportionately affect larger adults in a predatory coral reef fish.

Messmer V, Pratchett MS, Hoey AS, Tobin AJ, Coker DJ, Cooke SJ, Clark TD.

Glob Chang Biol. 2017 Jun;23(6):2230-2240. doi: 10.1111/gcb.13552. Epub 2016 Dec 13.

PMID:
27809393
35.

Coming up for air: thermal dependence of dive behaviours and metabolism in sea snakes.

Udyawer V, Simpfendorfer CA, Heupel MR, Clark TD.

J Exp Biol. 2016 Nov 1;219(Pt 21):3447-3454. Epub 2016 Sep 2.

36.

Scientific Misconduct: The Elephant in the Lab. A Response to Parker et al.

Clark TD, Binning SA, Raby GD, Speers-Roesch B, Sundin J, Jutfelt F, Roche DG.

Trends Ecol Evol. 2016 Dec;31(12):899-900. doi: 10.1016/j.tree.2016.09.006. Epub 2016 Oct 1. No abstract available.

PMID:
27707511
37.

Malaria burden in a birth cohort of HIV-exposed uninfected Ugandan infants living in a high malaria transmission setting.

Kakuru A, Natureeba P, Muhindo MK, Clark TD, Havlir DV, Cohan D, Dorsey G, Kamya MR, Ruel T.

Malar J. 2016 Oct 18;15(1):500.

38.

Implementation and Operational Research: Population-Based Active Tuberculosis Case Finding During Large-Scale Mobile HIV Testing Campaigns in Rural Uganda.

Ssemmondo E, Mwangwa F, Kironde JL, Kwarisiima D, Clark TD, Marquez C, Charlebois ED, Petersen ML, Kamya MR, Havlir DV, Chamie G; SEARCH Collaboration.

J Acquir Immune Defic Syndr. 2016 Nov 1;73(3):e46-e50.

PMID:
27741032
39.

Implementation and Operational Research: Cost and Efficiency of a Hybrid Mobile Multidisease Testing Approach With High HIV Testing Coverage in East Africa.

Chang W, Chamie G, Mwai D, Clark TD, Thirumurthy H, Charlebois ED, Petersen M, Kabami J, Ssemmondo E, Kadede K, Kwarisiima D, Sang N, Bukusi EA, Cohen CR, Kamya M, Havlir DV, Kahn JG.

J Acquir Immune Defic Syndr. 2016 Nov 1;73(3):e39-e45.

40.

Reductions in malaria in pregnancy and adverse birth outcomes following indoor residual spraying of insecticide in Uganda.

Muhindo MK, Kakuru A, Natureeba P, Awori P, Olwoch P, Ategeka J, Nayebare P, Clark TD, Muehlenbachs A, Roh M, Mpeka B, Greenhouse B, Havlir DV, Kamya MR, Dorsey G, Jagannathan P.

Malar J. 2016 Aug 26;15(1):437. doi: 10.1186/s12936-016-1489-x.

41.

Tracking wild sockeye salmon smolts to the ocean reveals distinct regions of nocturnal movement and high mortality.

Clark TD, Furey NB, Rechisky EL, Gale MK, Jeffries KM, Porter AD, Casselman MT, Lotto AG, Patterson DA, Cooke SJ, Farrell AP, Welch DW, Hinch SG.

Ecol Appl. 2016 Jun;26(4):959-78.

PMID:
27509741
42.

Men "missing" from population-based HIV testing: insights from qualitative research.

Camlin CS, Ssemmondo E, Chamie G, El Ayadi AM, Kwarisiima D, Sang N, Kabami J, Charlebois E, Petersen M, Clark TD, Bukusi EA, Cohen CR, R Kamya M, Havlir D; SEARCH Collaboration.

AIDS Care. 2016;28 Suppl 3:67-73. doi: 10.1080/09540121.2016.1164806.

43.

"How can I tell?" Consequences of HIV status disclosure among couples in eastern African communities in the context of an ongoing HIV "test-and-treat" trial.

Maeri I, El Ayadi A, Getahun M, Charlebois E, Akatukwasa C, Tumwebaze D, Itiakorit H, Owino L, Kwarisiima D, Ssemmondo E, Sang N, Kabami J, Clark TD, Petersen M, Cohen CR, Bukusi EA, Kamya M, Havlir D, Camlin CS; SEARCH Collaboration.

AIDS Care. 2016;28 Suppl 3:59-66. doi: 10.1080/09540121.2016.1168917.

44.

Cardiac reflexes in a warming world: thermal plasticity of barostatic control and autonomic tones in a temperate fish.

Sandblom E, Ekström A, Brijs J, Sundström LF, Jutfelt F, Clark TD, Adill A, Aho T, Gräns A.

J Exp Biol. 2016 Sep 15;219(Pt 18):2880-2887. Epub 2016 Jul 8.

45.

Cardiac oxygen limitation during an acute thermal challenge in the European perch: effects of chronic environmental warming and experimental hyperoxia.

Ekström A, Brijs J, Clark TD, Gräns A, Jutfelt F, Sandblom E.

Am J Physiol Regul Integr Comp Physiol. 2016 Aug 1;311(2):R440-9. doi: 10.1152/ajpregu.00530.2015. Epub 2016 Jun 8.

46.

Increased adolescent HIV testing with a hybrid mobile strategy in Uganda and Kenya.

Kadede K, Ruel T, Kabami J, Ssemmondo E, Sang N, Kwarisiima D, Bukusi E, Cohen CR, Liegler T, Clark TD, Charlebois ED, Petersen ML, Kamya MR, Havlir DV, Chamie G; SEARCH team.

AIDS. 2016 Sep 10;30(14):2121-6. doi: 10.1097/QAD.0000000000001180.

47.

Limited Capacity for Faster Digestion in Larval Coral Reef Fish at an Elevated Temperature.

McLeod IM, Clark TD.

PLoS One. 2016 May 18;11(5):e0155360. doi: 10.1371/journal.pone.0155360. eCollection 2016.

48.

Physiological constraints to climate warming in fish follow principles of plastic floors and concrete ceilings.

Sandblom E, Clark TD, Gräns A, Ekström A, Brijs J, Sundström LF, Odelström A, Adill A, Aho T, Jutfelt F.

Nat Commun. 2016 May 17;7:11447. doi: 10.1038/ncomms11447.

49.

Ecological Influences and Morphological Correlates of Resting and Maximal Metabolic Rates across Teleost Fish Species.

Killen SS, Glazier DS, Rezende EL, Clark TD, Atkinson D, Willener AS, Halsey LG.

Am Nat. 2016 May;187(5):592-606. doi: 10.1086/685893. Epub 2016 Apr 1.

PMID:
27104992
50.

Remote bioenergetics measurements in wild fish: Opportunities and challenges.

Cooke SJ, Brownscombe JW, Raby GD, Broell F, Hinch SG, Clark TD, Semmens JM.

Comp Biochem Physiol A Mol Integr Physiol. 2016 Dec;202:23-37. doi: 10.1016/j.cbpa.2016.03.022. Epub 2016 Apr 6. Review.

PMID:
27063208

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