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Items: 1 to 50 of 207

1.

MenAfriNet: A Network Supporting Case-Based Meningitis Surveillance and Vaccine Evaluation in the Meningitis Belt of Africa.

Patel JC, Soeters HM, Diallo AO, Bicaba BW, Kadadé G, Dembélé AY, Acyl MA, Nikiema C, Lingani C, Hatcher C, Acosta AM, Thomas JD, Diomande F, Martin S, Clark TA, Mihigo R, Hajjeh RA, Zilber CH, Aké F, Mbaeyi SA, Wang X, Moisi JC, Ronveaux O, Mwenda JM, Novak RT; MenAfriNet Consortium.

J Infect Dis. 2019 Oct 31;220(Supplement_4):S148-S154. doi: 10.1093/infdis/jiz308.

PMID:
31671453
2.

Rehabilitative Training Interacts with Ischemia-Instigated Spine Dynamics to Promote a Lasting Population of New Synapses in Peri-Infarct Motor Cortex.

Clark TA, Sullender C, Jacob D, Zuo Y, Dunn AK, Jones TA.

J Neurosci. 2019 Oct 23;39(43):8471-8483. doi: 10.1523/JNEUROSCI.1141-19.2019. Epub 2019 Sep 11.

PMID:
31511430
3.

Targeted Long-Read RNA Sequencing Demonstrates Transcriptional Diversity Driven by Splice-Site Variation in MYBPC3.

Dainis A, Tseng E, Clark TA, Hon T, Wheeler M, Ashley E.

Circ Genom Precis Med. 2019 May;12(5):e002464. doi: 10.1161/CIRCGEN.119.002464. No abstract available. Erratum in: Circ Genom Precis Med. 2019 Aug;12(8):e000059.

PMID:
31112421
4.

Impact of the Saving Mothers, Giving Life Approach on Decreasing Maternal and Perinatal Deaths in Uganda and Zambia.

Serbanescu F, Clark TA, Goodwin MM, Nelson LJ, Boyd MA, Kekitiinwa AR, Kaharuza F, Picho B, Morof D, Blanton C, Mumba M, Komakech P, Carlosama F, Schmitz MM, Conlon CM.

Glob Health Sci Pract. 2019 Mar 13;7(Suppl 1):S27-S47. doi: 10.9745/GHSP-D-18-00428. Print 2019 Mar 11.

5.

Artery targeted photothrombosis widens the vascular penumbra, instigates peri-infarct neovascularization and models forelimb impairments.

Clark TA, Sullender C, Kazmi SM, Speetles BL, Williamson MR, Palmberg DM, Dunn AK, Jones TA.

Sci Rep. 2019 Feb 20;9(1):2323. doi: 10.1038/s41598-019-39092-7.

6.

CRISPR/Cas9-targeted enrichment and long-read sequencing of the Fuchs endothelial corneal dystrophy-associated TCF4 triplet repeat.

Hafford-Tear NJ, Tsai YC, Sadan AN, Sanchez-Pintado B, Zarouchlioti C, Maher GJ, Liskova P, Tuft SJ, Hardcastle AJ, Clark TA, Davidson AE.

Genet Med. 2019 Sep;21(9):2092-2102. doi: 10.1038/s41436-019-0453-x. Epub 2019 Feb 8.

7.

Increase in Acute Flaccid Myelitis - United States, 2018.

McKay SL, Lee AD, Lopez AS, Nix WA, Dooling KL, Keaton AA, Spence-Davizon E, Herlihy R, Clark TA, Hopkins SE, Pastula DM, Sejvar J, Oberste MS, Pallansch MA, Patel M, Routh JA.

MMWR Morb Mortal Wkly Rep. 2018 Nov 16;67(45):1273-1275. doi: 10.15585/mmwr.mm6745e1.

8.

Clinical utility of tumor genomic profiling in patients with high plasma circulating tumor DNA burden or metabolically active tumors.

Zhou C, Yuan Z, Ma W, Qi L, Mahavongtrakul A, Li Y, Li H, Gong J, Fan RR, Li J, Molmen M, Clark TA, Pavlick D, Frampton GM, Forcier B, Moore EH, Shelton DK, Cooke M, Ali SM, Miller VA, Gregg JP, Stephens PJ, Li T.

J Hematol Oncol. 2018 Nov 6;11(1):129. doi: 10.1186/s13045-018-0671-8.

9.

Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt-Liberia, 2017: an epidemiological and laboratory investigation.

Bozio CH, Vuong J, Dokubo EK, Fallah MP, McNamara LA, Potts CC, Doedeh J, Gbanya M, Retchless AC, Patel JC, Clark TA, Kohar H, Nagbe T, Clement P, Katawera V, Mahmoud N, Djingarey HM, Perrocheau A, Naidoo D, Stone M, George RN, Williams D, Gasasira A, Nyenswah T, Wang X, Fox LM; Liberian Meningococcal Disease Outbreak Response Team.

Lancet Infect Dis. 2018 Dec;18(12):1360-1367. doi: 10.1016/S1473-3099(18)30476-6. Epub 2018 Oct 15.

10.

SMRT-Cappable-seq reveals complex operon variants in bacteria.

Yan B, Boitano M, Clark TA, Ettwiller L.

Nat Commun. 2018 Sep 10;9(1):3676. doi: 10.1038/s41467-018-05997-6.

11.

Imaging of cortical oxygen tension and blood flow following targeted photothrombotic stroke.

Sullender CT, Mark AE, Clark TA, Esipova TV, Vinogradov SA, Jones TA, Dunn AK.

Neurophotonics. 2018 Jul;5(3):035003. doi: 10.1117/1.NPh.5.3.035003. Epub 2018 Jul 27.

12.

Analytical Validation of a Hybrid Capture-Based Next-Generation Sequencing Clinical Assay for Genomic Profiling of Cell-Free Circulating Tumor DNA.

Clark TA, Chung JH, Kennedy M, Hughes JD, Chennagiri N, Lieber DS, Fendler B, Young L, Zhao M, Coyne M, Breese V, Young G, Donahue A, Pavlick D, Tsiros A, Brennan T, Zhong S, Mughal T, Bailey M, He J, Roels S, Frampton GM, Spoerke JM, Gendreau S, Lackner M, Schleifman E, Peters E, Ross JS, Ali SM, Miller VA, Gregg JP, Stephens PJ, Welsh A, Otto GA, Lipson D.

J Mol Diagn. 2018 Sep;20(5):686-702. doi: 10.1016/j.jmoldx.2018.05.004. Epub 2018 Jun 22.

13.

Detailed analysis of HTT repeat elements in human blood using targeted amplification-free long-read sequencing.

Höijer I, Tsai YC, Clark TA, Kotturi P, Dahl N, Stattin EL, Bondeson ML, Feuk L, Gyllensten U, Ameur A.

Hum Mutat. 2018 Sep;39(9):1262-1272. doi: 10.1002/humu.23580. Epub 2018 Jul 12.

14.

Immediate Nerve Transfer for Treatment of Peroneal Nerve Palsy Secondary to an Intraneural Ganglion: Case Report and Review.

Ratanshi I, Clark TA, Giuffre JL.

Plast Surg (Oakv). 2018 May;26(2):80-84. doi: 10.1177/2292550317747844. Epub 2018 Jan 9.

15.

Preferential stabilization of newly formed dendritic spines in motor cortex during manual skill learning predicts performance gains, but not memory endurance.

Clark TA, Fu M, Dunn AK, Zuo Y, Jones TA.

Neurobiol Learn Mem. 2018 Jul;152:50-60. doi: 10.1016/j.nlm.2018.05.005. Epub 2018 May 17.

16.

Prevention of Pertussis, Tetanus, and Diphtheria with Vaccines in the United States: Recommendations of the Advisory Committee on Immunization Practices (ACIP).

Liang JL, Tiwari T, Moro P, Messonnier NE, Reingold A, Sawyer M, Clark TA.

MMWR Recomm Rep. 2018 Apr 27;67(2):1-44. doi: 10.15585/mmwr.rr6702a1.

17.

Universal Alternative Splicing of Noncoding Exons.

Deveson IW, Brunck ME, Blackburn J, Tseng E, Hon T, Clark TA, Clark MB, Crawford J, Dinger ME, Nielsen LK, Mattick JS, Mercer TR.

Cell Syst. 2018 Feb 28;6(2):245-255.e5. doi: 10.1016/j.cels.2017.12.005. Epub 2018 Jan 24.

18.

Correction: Identifying Optimal Vaccination Strategies for Serogroup A Neisseria meningitidis Conjugate Vaccine in the African Meningitis Belt.

Tartof S, Cohn A, Tarbangdo F, Djingarey MH, Messonnier N, Clark TA, Kambou JL, Novak R, Diomandé FVK, Medah I, Jackson ML.

PLoS One. 2017 Dec 19;12(12):e0190188. doi: 10.1371/journal.pone.0190188. eCollection 2017.

19.

Methylomic and phenotypic analysis of the ModH5 phasevarion of Helicobacter pylori.

Srikhanta YN, Gorrell RJ, Power PM, Tsyganov K, Boitano M, Clark TA, Korlach J, Hartland EL, Jennings MP, Kwok T.

Sci Rep. 2017 Nov 23;7(1):16140. doi: 10.1038/s41598-017-15721-x.

20.

Rapid Laboratory Identification of Neisseria meningitidis Serogroup C as the Cause of an Outbreak - Liberia, 2017.

Patel JC, George J, Vuong J, Potts CC, Bozio C, Clark TA, Thomas J, Schier J, Chang A, Waller JL, Diaz MH, Whaley M, Jenkins LT, Fuller S, Williams DE, Redd JT, Arthur RR, Taweh F, Vera Walker Y, Hardy P, Freeman M, Katawera V, Gwesa G, Gbanya MZ, Clement P, Kohar H, Stone M, Fallah M, Nyenswah T, Winchell JM, Wang X, McNamara LA, Dokubo EK, Fox LM.

MMWR Morb Mortal Wkly Rep. 2017 Oct 27;66(42):1144-1147. doi: 10.15585/mmwr.mm6642a5. Erratum in: MMWR Morb Mortal Wkly Rep. 2017 Nov 17;66(45):1262.

21.

Immediate Nerve Transfer for the Treatment of Peroneal Nerve Palsy Secondary to an Intraneural Ganglion: Case Report and Review.

Ratanshi I, Clark TA, Giuffre JL.

Plast Surg (Oakv). 2017 Feb;25(1):54-58. doi: 10.1177/2292550317694842. Epub 2017 Mar 10.

22.

On the diversity and richness of understory bryophytes at Nectandra Cloud Forest Reserve, Costa Rica.

Norris DH, Kraichak E, Risk AC, Lucas D, Allard DJ, Rosengren F, Clark TA, Fenton N, Tessler M, Phephu N, Lennette ET.

Biodivers Data J. 2017 Mar 24;(5):e11778. doi: 10.3897/BDJ.5.e11778. eCollection 2017.

23.

In vivo multiphoton imaging of a diverse array of fluorophores to investigate deep neurovascular structure.

Miller DR, Hassan AM, Jarrett JW, Medina FA, Perillo EP, Hagan K, Shams Kazmi SM, Clark TA, Sullender CT, Jones TA, Zemelman BV, Dunn AK.

Biomed Opt Express. 2017 Jun 28;8(7):3470-3481. doi: 10.1364/BOE.8.003470. eCollection 2017 Jul 1.

24.

Complete Genome Sequence of Moraxella catarrhalis Strain CCRI-195ME, Isolated from the Middle Ear.

Tan A, Blakeway LV, Bakaletz LO, Boitano M, Clark TA, Korlach J, Jennings MP, Peak IR, Seib KL.

Genome Announc. 2017 May 25;5(21). pii: e00384-17. doi: 10.1128/genomeA.00384-17.

25.

Meningococcal Disease in Patients With Human Immunodeficiency Virus Infection: A Review of Cases Reported Through Active Surveillance in the United States, 2000-2008.

Harris CM, Wu HM, Li J, Hall HI, Lee A, Zell E, Harrison LH, Petit S, Farley MM, Lynfield R, Miller L, Nichols M, Reingold A, Schaffner W, Thomas A, MacNeil JR, Clark TA, Cohn AC.

Open Forum Infect Dis. 2016 Dec 20;3(4):ofw226. doi: 10.1093/ofid/ofw226. eCollection 2016 Oct.

26.

Methods for Genome-Wide Methylome Profiling of Campylobacter jejuni.

Mou KT, Clark TA, Muppirala UK, Severin AJ, Plummer PJ.

Methods Mol Biol. 2017;1512:199-210.

PMID:
27885609
27.

Novel m4C modification in type I restriction-modification systems.

Morgan RD, Luyten YA, Johnson SA, Clough EM, Clark TA, Roberts RJ.

Nucleic Acids Res. 2016 Nov 2;44(19):9413-9425. Epub 2016 Aug 31.

28.

Penicillin Use in Meningococcal Disease Management: Active Bacterial Core Surveillance Sites, 2009.

Blain AE, Mandal S, Wu H, MacNeil JR, Harrison LH, Farley MM, Lynfield R, Miller L, Nichols M, Petit S, Reingold A, Schaffner W, Thomas A, Zansky SM, Anderson R, Harcourt BH, Mayer LW, Clark TA, Cohn AC.

Open Forum Infect Dis. 2016 Jul 13;3(3):ofw152. eCollection 2016 Sep.

29.

Individualized Molecular Analyses Guide Efforts (IMAGE): A Prospective Study of Molecular Profiling of Tissue and Blood in Metastatic Triple-Negative Breast Cancer.

Parsons HA, Beaver JA, Cimino-Mathews A, Ali SM, Axilbund J, Chu D, Connolly RM, Cochran RL, Croessmann S, Clark TA, Gocke CD, Jeter SC, Kennedy MR, Lauring J, Lee J, Lipson D, Miller VA, Otto GA, Rosner GL, Ross JS, Slater S, Stephens PJ, VanDenBerg DA, Wolff AC, Young LE, Zabransky DJ, Zhang Z, Zorzi J, Stearns V, Park BH.

Clin Cancer Res. 2017 Jan 15;23(2):379-386. doi: 10.1158/1078-0432.CCR-16-1543. Epub 2016 Aug 3.

30.

Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.

Wang B, Tseng E, Regulski M, Clark TA, Hon T, Jiao Y, Lu Z, Olson A, Stein JC, Ware D.

Nat Commun. 2016 Jun 24;7:11708. doi: 10.1038/ncomms11708.

31.

Noteworthy habitat and phylogeny updates for eastern US Ulota (Orthotrichaceae, Bryophyta).

Tessler M, Cunningham SW, Clark TA.

Mitochondrial DNA A DNA Mapp Seq Anal. 2017 Sep;28(5):650-654. doi: 10.3109/24701394.2016.1166221. Epub 2016 Apr 6.

PMID:
27159721
32.

Impact and cost-effectiveness of a second tetanus toxoid, reduced diphtheria toxoid, and acellular pertussis (Tdap) vaccine dose to prevent pertussis in the United States.

Kamiya H, Cho BH, Messonnier ML, Clark TA, Liang JL.

Vaccine. 2016 Apr 4;34(15):1832-8. doi: 10.1016/j.vaccine.2016.02.027. Epub 2016 Feb 17.

PMID:
26899377
33.

The Epigenomic Landscape of Prokaryotes.

Blow MJ, Clark TA, Daum CG, Deutschbauer AM, Fomenkov A, Fries R, Froula J, Kang DD, Malmstrom RR, Morgan RD, Posfai J, Singh K, Visel A, Wetmore K, Zhao Z, Rubin EM, Korlach J, Pennacchio LA, Roberts RJ.

PLoS Genet. 2016 Feb 12;12(2):e1005854. doi: 10.1371/journal.pgen.1005854. eCollection 2016 Feb. Erratum in: PLoS Genet. 2016 May;12(5):e1006064.

34.

DNA Methylation Assessed by SMRT Sequencing Is Linked to Mutations in Neisseria meningitidis Isolates.

Sater MR, Lamelas A, Wang G, Clark TA, Röltgen K, Mane S, Korlach J, Pluschke G, Schmid CD.

PLoS One. 2015 Dec 11;10(12):e0144612. doi: 10.1371/journal.pone.0144612. eCollection 2015.

35.

Trends in Pertussis Diagnostic Testing in the United States, 1990 to 2012.

Faulkner AE, Skoff TH, Tondella ML, Cohn A, Clark TA, Martin SW.

Pediatr Infect Dis J. 2016 Jan;35(1):39-44. doi: 10.1097/INF.0000000000000921.

PMID:
26418242
36.

Population-Based Surveillance of Neisseria meningitidis Antimicrobial Resistance in the United States.

Harcourt BH, Anderson RD, Wu HM, Cohn AC, MacNeil JR, Taylor TH, Wang X, Clark TA, Messonnier NE, Mayer LW.

Open Forum Infect Dis. 2015 Aug 13;2(3):ofv117. doi: 10.1093/ofid/ofv117. eCollection 2015 Sep.

37.

Embryos of a moss can be hardened to desiccation tolerance: effects of rate of drying on the timeline of recovery and dehardening in Aloina ambigua (Pottiaceae).

Brinda JC, Stark LR, Clark TA, Greenwood JL.

Ann Bot. 2016 Jan;117(1):153-63. doi: 10.1093/aob/mcv136. Epub 2015 Sep 9.

38.

A biphasic epigenetic switch controls immunoevasion, virulence and niche adaptation in non-typeable Haemophilus influenzae.

Atack JM, Srikhanta YN, Fox KL, Jurcisek JA, Brockman KL, Clark TA, Boitano M, Power PM, Jen FE, McEwan AG, Grimmond SM, Smith AL, Barenkamp SJ, Korlach J, Bakaletz LO, Jennings MP.

Nat Commun. 2015 Jul 28;6:7828. doi: 10.1038/ncomms8828.

39.

Nerve Transfers for Treatment of Isolated Axillary Nerve Injuries.

Wheelock M, Clark TA, Giuffre JL.

Plast Surg (Oakv). 2015 Summer;23(2):77-80.

40.

Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9.

Bryson AL, Hwang Y, Sherrill-Mix S, Wu GD, Lewis JD, Black L, Clark TA, Bushman FD.

MBio. 2015 Jun 16;6(3):e00648. doi: 10.1128/mBio.00648-15.

41.

Genetic Stabilization of the Drug-Resistant PMEN1 Pneumococcus Lineage by Its Distinctive DpnIII Restriction-Modification System.

Eutsey RA, Powell E, Dordel J, Salter SJ, Clark TA, Korlach J, Ehrlich GD, Hiller NL.

MBio. 2015 Jun 16;6(3):e00173. doi: 10.1128/mBio.00173-15.

42.

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.

Weirather JL, Afshar PT, Clark TA, Tseng E, Powers LS, Underwood JG, Zabner J, Korlach J, Wong WH, Au KF.

Nucleic Acids Res. 2015 Oct 15;43(18):e116. doi: 10.1093/nar/gkv562. Epub 2015 Jun 3.

43.

Complete Genome Sequence Analysis of Bacillus subtilis T30.

Xu SY, Boitano M, Clark TA, Vincze T, Fomenkov A, Kumar S, Too PH, Gonchar D, Degtyarev SK, Roberts RJ.

Genome Announc. 2015 May 7;3(3). pii: e00395-15. doi: 10.1128/genomeA.00395-15.

44.

Tdap vaccine effectiveness in adolescents during the 2012 Washington State pertussis epidemic.

Acosta AM, DeBolt C, Tasslimi A, Lewis M, Stewart LK, Misegades LK, Messonnier NE, Clark TA, Martin SW, Patel M.

Pediatrics. 2015 Jun;135(6):981-9. doi: 10.1542/peds.2014-3358. Epub 2015 May 4.

45.

First pertussis vaccine dose and prevention of infant mortality.

Tiwari TS, Baughman AL, Clark TA.

Pediatrics. 2015 Jun;135(6):990-9. doi: 10.1542/peds.2014-2291. Epub 2015 May 4.

46.

Management of complications of ligament injuries of the wrist.

Gella S, Giuffre JL, Clark TA.

Hand Clin. 2015 May;31(2):267-75. doi: 10.1016/j.hcl.2015.01.003. Review.

PMID:
25934201
47.

First Use of a Serogroup B Meningococcal Vaccine in the US in Response to a University Outbreak.

McNamara LA, Shumate AM, Johnsen P, MacNeil JR, Patel M, Bhavsar T, Cohn AC, Dinitz-Sklar J, Duffy J, Finnie J, Garon D, Hary R, Hu F, Kamiya H, Kim HJ, Kolligian J Jr, Neglia J, Oakley J, Wagner J, Wagner K, Wang X, Yu Y, Montana B, Tan C, Izzo R, Clark TA.

Pediatrics. 2015 May;135(5):798-804. doi: 10.1542/peds.2014-4015.

48.

A change in vaccine efficacy and duration of protection explains recent rises in pertussis incidence in the United States.

Gambhir M, Clark TA, Cauchemez S, Tartof SY, Swerdlow DL, Ferguson NM.

PLoS Comput Biol. 2015 Apr 23;11(4):e1004138. doi: 10.1371/journal.pcbi.1004138. eCollection 2015 Apr.

49.

Genome-wide methylation patterns in Salmonella enterica Subsp. enterica Serovars.

Pirone-Davies C, Hoffmann M, Roberts RJ, Muruvanda T, Timme RE, Strain E, Luo Y, Payne J, Luong K, Song Y, Tsai YC, Boitano M, Clark TA, Korlach J, Evans PS, Allard MW.

PLoS One. 2015 Apr 10;10(4):e0123639. doi: 10.1371/journal.pone.0123639. eCollection 2015.

50.

Specificity of the ModA11, ModA12 and ModD1 epigenetic regulator N(6)-adenine DNA methyltransferases of Neisseria meningitidis.

Seib KL, Jen FE, Tan A, Scott AL, Kumar R, Power PM, Chen LT, Wu HJ, Wang AH, Hill DM, Luyten YA, Morgan RD, Roberts RJ, Maiden MC, Boitano M, Clark TA, Korlach J, Rao DN, Jennings MP.

Nucleic Acids Res. 2015 Apr 30;43(8):4150-62. doi: 10.1093/nar/gkv219. Epub 2015 Apr 6.

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