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Successful Multidisciplinary Management of an Endodontic-Periodontal Lesion Associated with Palato-Radicular Groove: A Case Report.

Katwal D, Fiorica JK, Bleuel J, Clark SJ.

Clin Adv Periodontics. 2019 Sep 27. doi: 10.1002/cap.10079. [Epub ahead of print]


Association of Expanded Medicaid Coverage With Health and Job-Related Outcomes Among Enrollees With Behavioral Health Disorders.

Tipirneni R, Patel MR, Goold SD, Kieffer EC, Ayanian JZ, Clark SJ, Lee S, Bryant C, Kirch MA, Solway E, Luster J, Lewallen M, Zivin K.

Psychiatr Serv. 2019 Sep 25:appips201900179. doi: 10.1176/ [Epub ahead of print]


Diagnosis and Care of Chronic Health Conditions Among Medicaid Expansion Enrollees: a Mixed-Methods Observational Study.

Rosland AM, Kieffer EC, Tipirneni R, Kullgren JT, Kirch M, Arntson EK, Clark SJ, Lee S, Solway E, Beathard E, Ayanian JZ, Goold SD.

J Gen Intern Med. 2019 Sep 11. doi: 10.1007/s11606-019-05323-w. [Epub ahead of print]


Shifting from "Community-Placed" to "Community-Based" Research to Advance Health Equity: A Case Study of the Heatwaves, Housing, and Health: Increasing Climate Resiliency in Detroit (HHH) Partnership.

Ziegler TB, Coombe CM, Rowe ZE, Clark SJ, Gronlund CJ, Lee M, Palacios A, Larsen LS, Reames TG, Schott J, Williams GO, O'Neill MS.

Int J Environ Res Public Health. 2019 Sep 9;16(18). pii: E3310. doi: 10.3390/ijerph16183310.


Enhancement of light emission in Bragg monolayer-thick quantum well structures.

Pozina G, Ivanov KA, Morozov KM, Girshova EI, Egorov AY, Clark SJ, Kaliteevski MA.

Sci Rep. 2019 Jul 15;9(1):10162. doi: 10.1038/s41598-019-46646-2.


Methylome and transcriptome maps of human visceral and subcutaneous adipocytes reveal key epigenetic differences at developmental genes.

Bradford ST, Nair SS, Statham AL, van Dijk SJ, Peters TJ, Anwar F, French HJ, von Martels JZH, Sutcliffe B, Maddugoda MP, Peranec M, Varinli H, Arnoldy R, Buckley M, Ross JP, Zotenko E, Song JZ, Stirzaker C, Bauer DC, Qu W, Swarbrick MM, Lutgers HL, Lord RV, Samaras K, Molloy PL, Clark SJ.

Sci Rep. 2019 Jul 2;9(1):9511. doi: 10.1038/s41598-019-45777-w.


Automated versus physician assignment of cause of death for verbal autopsies: randomized trial of 9374 deaths in 117 villages in India.

Jha P, Kumar D, Dikshit R, Budukh A, Begum R, Sati P, Kolpak P, Wen R, Raithatha SJ, Shah U, Li ZR, Aleksandrowicz L, Shah P, Piyasena K, McCormick TH, Gelband H, Clark SJ.

BMC Med. 2019 Jun 27;17(1):116. doi: 10.1186/s12916-019-1353-2.


Monozygotic twins and triplets discordant for amyotrophic lateral sclerosis display differential methylation and gene expression.

Tarr IS, McCann EP, Benyamin B, Peters TJ, Twine NA, Zhang KY, Zhao Q, Zhang ZH, Rowe DB, Nicholson GA, Bauer D, Clark SJ, Blair IP, Williams KL.

Sci Rep. 2019 Jun 4;9(1):8254. doi: 10.1038/s41598-019-44765-4.


A General Age-Specific Mortality Model With an Example Indexed by Child Mortality or Both Child and Adult Mortality.

Clark SJ.

Demography. 2019 Jun;56(3):1131-1159. doi: 10.1007/s13524-019-00785-3.


Local magnetism, magnetic order and spin freezing in the 'nonmetallic metal' FeCrAs.

Huddart BM, Birch MT, Pratt FL, Blundell SJ, Porter DG, Clark SJ, Wu W, Julian SR, Hatton PD, Lancaster T.

J Phys Condens Matter. 2019 Jul 17;31(28):285803. doi: 10.1088/1361-648X/ab151f. Epub 2019 Apr 1.


Esophagitis in Pediatric Esophageal Atresia: Acid May Not Always Be the Issue.

Yasuda JL, Clark SJ, Staffa SJ, Blansky B, Ngo PD, Hamilton TE, Smithers CJ, Jennings R, Manfredi MA.

J Pediatr Gastroenterol Nutr. 2019 Aug;69(2):163-170. doi: 10.1097/MPG.0000000000002336.


Loss-of-Function Mutations in the CFH Gene Affecting Alternatively Encoded Factor H-like 1 Protein Cause Dominant Early-Onset Macular Drusen.

Taylor RL, Poulter JA, Downes SM, McKibbin M, Khan KN, Inglehearn CF, Webster AR, Hardcastle AJ, Michaelides M, Bishop PN, Clark SJ, Black GC; United Kingdom Inherited Retinal Dystrophy Consortium.

Ophthalmology. 2019 Oct;126(10):1410-1421. doi: 10.1016/j.ophtha.2019.03.013. Epub 2019 Mar 21.


Factors influencing primary care providers' decisions to accept new Medicaid patients under Michigan's Medicaid expansion.

Tipirneni R, Kieffer EC, Ayanian JZ, Campbell EG, Salman C, Clark SJ, Chang T, Haggins AN, Solway E, Kirch MA, Goold SD.

Am J Manag Care. 2019 Mar;25(3):120-127.


Integrated epigenomic analysis stratifies chromatin remodellers into distinct functional groups.

Giles KA, Gould CM, Du Q, Skvortsova K, Song JZ, Maddugoda MP, Achinger-Kawecka J, Stirzaker C, Clark SJ, Taberlay PC.

Epigenetics Chromatin. 2019 Feb 12;12(1):12. doi: 10.1186/s13072-019-0258-9.


DNA Hypermethylation Encroachment at CpG Island Borders in Cancer Is Predisposed by H3K4 Monomethylation Patterns.

Skvortsova K, Masle-Farquhar E, Luu PL, Song JZ, Qu W, Zotenko E, Gould CM, Du Q, Peters TJ, Colino-Sanguino Y, Pidsley R, Nair SS, Khoury A, Smith GC, Miosge LA, Reed JH, Kench JG, Rubin MA, Horvath L, Bogdanovic O, Lim SM, Polo JM, Goodnow CC, Stirzaker C, Clark SJ.

Cancer Cell. 2019 Feb 11;35(2):297-314.e8. doi: 10.1016/j.ccell.2019.01.004.


Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity.

Linker SM, Urban L, Clark SJ, Chhatriwala M, Amatya S, McCarthy DJ, Ebersberger I, Vallier L, Reik W, Stegle O, Bonder MJ.

Genome Biol. 2019 Feb 11;20(1):30. doi: 10.1186/s13059-019-1644-0.


Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer.

Du Q, Bert SA, Armstrong NJ, Caldon CE, Song JZ, Nair SS, Gould CM, Luu PL, Peters T, Khoury A, Qu W, Zotenko E, Stirzaker C, Clark SJ.

Nat Commun. 2019 Jan 24;10(1):416. doi: 10.1038/s41467-019-08302-1.


Changes in the spatial distribution of the under-five mortality rate: Small-area analysis of 122 DHS surveys in 262 subregions of 35 countries in Africa.

Li Z, Hsiao Y, Godwin J, Martin BD, Wakefield J, Clark SJ; with support from the United Nations Inter-agency Group for Child Mortality Estimation and its technical advisory group.

PLoS One. 2019 Jan 22;14(1):e0210645. doi: 10.1371/journal.pone.0210645. eCollection 2019.


Association of Access to Family Planning Services With Medicaid Expansion Among Female Enrollees in Michigan.

Moniz MH, Kirch MA, Solway E, Goold SD, Ayanian JZ, Kieffer EC, Clark SJ, Tipirneni R, Kullgren JT, Chang T.

JAMA Netw Open. 2018 Aug 3;1(4):e181627. doi: 10.1001/jamanetworkopen.2018.1627.


Whole-genome methylation profiling of the retinal pigment epithelium of individuals with age-related macular degeneration reveals differential methylation of the SKI, GTF2H4, and TNXB genes.

Porter LF, Saptarshi N, Fang Y, Rathi S, den Hollander AI, de Jong EK, Clark SJ, Bishop PN, Olsen TW, Liloglou T, Chavali VRM, Paraoan L.

Clin Epigenetics. 2019 Jan 14;11(1):6. doi: 10.1186/s13148-019-0608-2.


Changes in Health and Ability to Work Among Medicaid Expansion Enrollees: a Mixed Methods Study.

Tipirneni R, Kullgren JT, Ayanian JZ, Kieffer EC, Rosland AM, Chang T, Haggins AN, Clark SJ, Lee S, Solway E, Kirch MA, Mrukowicz C, Beathard E, Sears E, Goold SD.

J Gen Intern Med. 2019 Feb;34(2):272-280. doi: 10.1007/s11606-018-4736-8. Epub 2018 Dec 5.


Mother-child transmission of epigenetic information by tunable polymorphic imprinting.

Carpenter BL, Zhou W, Madaj Z, DeWitt AK, Ross JP, Grønbæk K, Liang G, Clark SJ, Molloy PL, Jones PA.

Proc Natl Acad Sci U S A. 2018 Dec 18;115(51):E11970-E11977. doi: 10.1073/pnas.1815005115. Epub 2018 Dec 3.


Serum Free Methylated Glutathione S-transferase 1 DNA Levels, Survival, and Response to Docetaxel in Metastatic, Castration-resistant Prostate Cancer: Post Hoc Analyses of Data from a Phase 3 Trial.

Mahon KL, Qu W, Lin HM, Spielman C, Cain D, Jacobs C, Stockler MR, Higano CS, de Bono JS, Chi KN, Clark SJ, Horvath LG.

Eur Urol. 2019 Sep;76(3):306-312. doi: 10.1016/j.eururo.2018.11.001. Epub 2018 Nov 19.


Complex Low Energy Tetrahedral Polymorphs of Group IV Elements from First Principles.

He C, Shi X, Clark SJ, Li J, Pickard CJ, Ouyang T, Zhang C, Tang C, Zhong J.

Phys Rev Lett. 2018 Oct 26;121(17):175701. doi: 10.1103/PhysRevLett.121.175701.


Interhospital Transfer of Children in Septic Shock: A Clinician Interview Qualitative Study.

Odetola FO, Anspach RR, Han YY, Clark SJ.

J Intensive Care Med. 2018 Dec;33(12):671-679. doi: 10.1177/0885066616683662. Epub 2016 Dec 14.


Prescription and Nonprescription Sleep Product Use Among Older Adults in the United States.

Maust DT, Solway E, Clark SJ, Kirch M, Singer DC, Malani P.

Am J Geriatr Psychiatry. 2019 Jan;27(1):32-41. doi: 10.1016/j.jagp.2018.09.004. Epub 2018 Sep 14.


Parents' awareness of disaster plans in children's early learning settings.

Hashikawa A, Chang M, Sielaff A, Bradin S, Singer DC, Matos-Moreno A, Clark SJ, Kauffman AD, Davis MM.

Am J Disaster Med. Spring 2018;13(2):85-95. doi: 10.5055/ajdm.2018.0290.


Epigenomics of mammary gland development.

Holliday H, Baker LA, Junankar SR, Clark SJ, Swarbrick A.

Breast Cancer Res. 2018 Sep 3;20(1):100. doi: 10.1186/s13058-018-1031-x. Review.


Virtual monoenergetic reconstruction of contrast-enhanced CT scans of the abdomen and pelvis at 40 keV improves the detection of peritoneal metastatic deposits.

Darras KE, Clark SJ, Kang H, Mohammed MF, Barrett S, Chang SD, Harris AC, Nicolaou S, McLaughlin PD.

Abdom Radiol (NY). 2019 Feb;44(2):422-428. doi: 10.1007/s00261-018-1733-7.


Evaluation of cross-platform and interlaboratory concordance via consensus modelling of genomic measurements.

Peters TJ, French HJ, Bradford ST, Pidsley R, Stirzaker C, Varinli H, Nair S, Qu W, Song J, Giles KA, Statham AL, Speirs H, Speed TP, Clark SJ.

Bioinformatics. 2019 Feb 15;35(4):560-570. doi: 10.1093/bioinformatics/bty675.


Genome-Scale Oscillations in DNA Methylation during Exit from Pluripotency.

Rulands S, Lee HJ, Clark SJ, Angermueller C, Smallwood SA, Krueger F, Mohammed H, Dean W, Nichols J, Rugg-Gunn P, Kelsey G, Stegle O, Simons BD, Reik W.

Cell Syst. 2018 Jul 25;7(1):63-76.e12. doi: 10.1016/j.cels.2018.06.012.


Endoscopic Esophageal Vacuum Therapy: A Novel Therapy for Esophageal Perforations in Pediatric Patients.

Manfredi MA, Clark SJ, Staffa SJ, Ngo PD, Smithers CJ, Hamilton TE, Jennings RW.

J Pediatr Gastroenterol Nutr. 2018 Dec;67(6):706-712. doi: 10.1097/MPG.0000000000002073.


Hyak mortality monitoring system: innovative sampling and estimation methods - proof of concept by simulation.

Clark SJ, Wakefield J, McCormick T, Ross M.

Glob Health Epidemiol Genom. 2018 Feb 5;3:e3. doi: 10.1017/gheg.2017.15. eCollection 2018.


Guidelines for whole genome bisulphite sequencing of intact and FFPET DNA on the Illumina HiSeq X Ten.

Nair SS, Luu PL, Qu W, Maddugoda M, Huschtscha L, Reddel R, Chenevix-Trench G, Toso M, Kench JG, Horvath LG, Hayes VM, Stricker PD, Hughes TP, White DL, Rasko JEJ, Wong JJ, Clark SJ.

Epigenetics Chromatin. 2018 May 28;11(1):24. doi: 10.1186/s13072-018-0194-0.


Sexual behavior and HIV risk across the life course in rural South Africa: trends and comparisons.

Houle B, Mojola SA, Angotti N, Schatz E, Gómez-Olivé FX, Clark SJ, Williams JR, Kabudula C, Tollman S, Menken J.

AIDS Care. 2018 Nov;30(11):1435-1443. doi: 10.1080/09540121.2018.1468008. Epub 2018 Apr 27.


Endoscopic Electrocautery Incisional Therapy as a Treatment for Refractory Benign Pediatric Esophageal Strictures.

Manfredi MA, Clark SJ, Medford S, Staffa SJ, Ngo PD, Hamilton TE, Smithers CJ, Jennings RW.

J Pediatr Gastroenterol Nutr. 2018 Oct;67(4):464-468. doi: 10.1097/MPG.0000000000002008.


Estimating under-five mortality in space and time in a developing world context.

Wakefield J, Fuglstad GA, Riebler A, Godwin J, Wilson K, Clark SJ.

Stat Methods Med Res. 2019 Sep;28(9):2614-2634. doi: 10.1177/0962280218767988. Epub 2018 Apr 19.


Enduring epigenetic landmarks define the cancer microenvironment.

Pidsley R, Lawrence MG, Zotenko E, Niranjan B, Statham A, Song J, Chabanon RM, Qu W, Wang H, Richards M, Nair SS, Armstrong NJ, Nim HT, Papargiris M, Balanathan P, French H, Peters T, Norden S, Ryan A, Pedersen J, Kench J, Daly RJ, Horvath LG, Stricker P, Frydenberg M, Taylor RA, Stirzaker C, Risbridger GP, Clark SJ.

Genome Res. 2018 May;28(5):625-638. doi: 10.1101/gr.229070.117. Epub 2018 Apr 12.


Implications of bond disorder in a S=1 kagome lattice.

Manson JL, Brambleby J, Goddard PA, Spurgeon PM, Villa JA, Liu J, Ghannadzadeh S, Foronda F, Singleton J, Lancaster T, Clark SJ, Thomas IO, Xiao F, Williams RC, Pratt FL, Blundell SJ, Topping CV, Baines C, Campana C, Noll B.

Sci Rep. 2018 Mar 16;8(1):4745. doi: 10.1038/s41598-018-23054-6.


Paediatric outcomes and timing of admission.

Ramsden L, McColgan MP, Rossor T, Greenough A, Clark SJ.

Arch Dis Child. 2018 Jun;103(6):611-617. doi: 10.1136/archdischild-2017-314559. Epub 2018 Mar 15. Review.


Quantum mechanical tunneling in the automerization of cyclobutadiene.

Schoonmaker R, Lancaster T, Clark SJ.

J Chem Phys. 2018 Mar 14;148(10):104109. doi: 10.1063/1.5019254.


Public Health Opportunities to Improve Late-Adolescent Immunization.

Clark SJ, Cowan AE, Wells KB.

J Public Health Manag Pract. 2018 Nov/Dec;24(6):554-557. doi: 10.1097/PHH.0000000000000792.


scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells.

Clark SJ, Argelaguet R, Kapourani CA, Stubbs TM, Lee HJ, Alda-Catalinas C, Krueger F, Sanguinetti G, Kelsey G, Marioni JC, Stegle O, Reik W.

Nat Commun. 2018 Feb 22;9(1):781. doi: 10.1038/s41467-018-03149-4.


A parsimonious characterization of change in global age-specific and total fertility rates.

Pantazis A, Clark SJ.

PLoS One. 2018 Jan 29;13(1):e0190574. doi: 10.1371/journal.pone.0190574. eCollection 2018.


C-reactive protein and pentraxin-3 binding of factor H-like protein 1 differs from complement factor H: implications for retinal inflammation.

Swinkels M, Zhang JH, Tilakaratna V, Black G, Perveen R, McHarg S, Inforzato A, Day AJ, Clark SJ.

Sci Rep. 2018 Jan 26;8(1):1643. doi: 10.1038/s41598-017-18395-7.


The WHO 2016 verbal autopsy instrument: An international standard suitable for automated analysis by InterVA, InSilicoVA, and Tariff 2.0.

Nichols EK, Byass P, Chandramohan D, Clark SJ, Flaxman AD, Jakob R, Leitao J, Maire N, Rao C, Riley I, Setel PW; WHO Verbal Autopsy Working Group.

PLoS Med. 2018 Jan 10;15(1):e1002486. doi: 10.1371/journal.pmed.1002486. eCollection 2018 Jan.


Bruch's Membrane Compartmentalizes Complement Regulation in the Eye with Implications for Therapeutic Design in Age-Related Macular Degeneration.

Clark SJ, McHarg S, Tilakaratna V, Brace N, Bishop PN.

Front Immunol. 2017 Dec 19;8:1778. doi: 10.3389/fimmu.2017.01778. eCollection 2017.


Fieldworker effects on substance use reporting in a rural South African setting.

Houle B, Angotti N, Gómez-Olivé FX, Clark SJ.

Int J Alcohol Drug Res. 2018;7(1):29-39. doi: 10.7895/ijadr.246.


Probabilistic population projections for countries with generalized HIV/AIDS epidemics.

Sharrow DJ, Godwin J, He Y, Clark SJ, Raftery AE.

Popul Stud (Camb). 2018 Mar;72(1):1-15. doi: 10.1080/00324728.2017.1401654. Epub 2017 Dec 19.


Bisulphite Sequencing of Chromatin Immunoprecipitated DNA (BisChIP-seq).

Stirzaker C, Song JZ, Statham AL, Clark SJ.

Methods Mol Biol. 2018;1708:285-302. doi: 10.1007/978-1-4939-7481-8_15.


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