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Items: 1 to 50 of 107

1.

Oral Development and Pathology.

Clark MB, Clark DA.

Ochsner J. 2018 Winter;18(4):339-344. doi: 10.31486/toj.18.0040. Review.

2.

Universal Alternative Splicing of Noncoding Exons.

Deveson IW, Brunck ME, Blackburn J, Tseng E, Hon T, Clark TA, Clark MB, Crawford J, Dinger ME, Nielsen LK, Mattick JS, Mercer TR.

Cell Syst. 2018 Feb 28;6(2):245-255.e5. doi: 10.1016/j.cels.2017.12.005. Epub 2018 Jan 24.

PMID:
29396323
3.

Intergenic disease-associated regions are abundant in novel transcripts.

Bartonicek N, Clark MB, Quek XC, Torpy JR, Pritchard AL, Maag JLV, Gloss BS, Crawford J, Taft RJ, Hayward NK, Montgomery GW, Mattick JS, Mercer TR, Dinger ME.

Genome Biol. 2017 Dec 28;18(1):241. doi: 10.1186/s13059-017-1363-3.

4.

Ecotypic differences in the phenology of the tundra species Eriophorum vaginatum reflect sites of origin.

Parker TC, Tang J, Clark MB, Moody MM, Fetcher N.

Ecol Evol. 2017 Oct 19;7(22):9775-9786. doi: 10.1002/ece3.3445. eCollection 2017 Nov.

5.

Long Noncoding RNAs CUPID1 and CUPID2 Mediate Breast Cancer Risk at 11q13 by Modulating the Response to DNA Damage.

Betts JA, Moradi Marjaneh M, Al-Ejeh F, Lim YC, Shi W, Sivakumaran H, Tropée R, Patch AM, Clark MB, Bartonicek N, Wiegmans AP, Hillman KM, Kaufmann S, Bain AL, Gloss BS, Crawford J, Kazakoff S, Wani S, Wen SW, Day B, Möller A, Cloonan N, Pearson J, Brown MA, Mercer TR, Waddell N, Khanna KK, Dray E, Dinger ME, Edwards SL, French JD.

Am J Hum Genet. 2017 Aug 3;101(2):255-266. doi: 10.1016/j.ajhg.2017.07.007.

6.

Degradation of Hole Transport Materials via Exciton-Driven Cyclization.

Bell BM, Clark MB Jr, Devore DD, De Vries TS, Froese RD, Gray KC, Jackson DHK, Kuech TF, Na HY, Kearns KL, Lee KJ, Mukhopadhyay S, Rachford AA, Spencer LP, Woodward WHH.

ACS Appl Mater Interfaces. 2017 Apr 19;9(15):13369-13379. doi: 10.1021/acsami.7b00208. Epub 2017 Apr 6.

PMID:
28350953
7.

RNAcentral: a comprehensive database of non-coding RNA sequences.

The RNAcentral Consortium, Petrov AI, Kay SJE, Kalvari I, Howe KL, Gray KA, Bruford EA, Kersey PJ, Cochrane G, Finn RD, Bateman A, Kozomara A, Griffiths-Jones S, Frankish A, Zwieb CW, Lau BY, Williams KP, Chan PP, Lowe TM, Cannone JJ, Gutell R, Machnicka MA, Bujnicki JM, Yoshihama M, Kenmochi N, Chai B, Cole JR, Szymanski M, Karlowski WM, Wood V, Huala E, Berardini TZ, Zhao Y, Chen R, Zhu W, Paraskevopoulou MD, Vlachos IS, Hatzigeorgiou AG, Ma L, Zhang Z, Puetz J, Stadler PF, McDonald D, Basu S, Fey P, Engel SR, Cherry JM, Volders PJ, Mestdagh P, Wower J, Clark MB, Quek XC, Dinger ME.

Nucleic Acids Res. 2017 Jan 4;45(D1):D128-D134. doi: 10.1093/nar/gkw1008. Epub 2016 Oct 28.

8.

Transfer-Free Fabrication of Graphene Scaffolds on High-k Dielectrics from Metal-Organic Oligomers.

Pang Q, Wang D, Wang X, Feng S, Clark MB Jr, Li Q.

ACS Appl Mater Interfaces. 2016 Sep 28;8(38):25469-75. doi: 10.1021/acsami.6b08358. Epub 2016 Sep 14.

PMID:
27580799
9.

Improved definition of the mouse transcriptome via targeted RNA sequencing.

Bussotti G, Leonardi T, Clark MB, Mercer TR, Crawford J, Malquori L, Notredame C, Dinger ME, Mattick JS, Enright AJ.

Genome Res. 2016 May;26(5):705-16. doi: 10.1101/gr.199760.115.

10.

Orientation Control in Thin Films of a High-χ Block Copolymer with a Surface Active Embedded Neutral Layer.

Zhang J, Clark MB, Wu C, Li M, Trefonas P 3rd, Hustad PD.

Nano Lett. 2016 Jan 13;16(1):728-35. doi: 10.1021/acs.nanolett.5b04602. Epub 2015 Dec 23.

PMID:
26682931
11.
12.

Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing.

Clark MB, Mercer TR, Bussotti G, Leonardi T, Haynes KR, Crawford J, Brunck ME, Cao KA, Thomas GP, Chen WY, Taft RJ, Nielsen LK, Enright AJ, Mattick JS, Dinger ME.

Nat Methods. 2015 Apr;12(4):339-42. doi: 10.1038/nmeth.3321. Epub 2015 Mar 9.

PMID:
25751143
13.

Genome-wide discovery of human splicing branchpoints.

Mercer TR, Clark MB, Andersen SB, Brunck ME, Haerty W, Crawford J, Taft RJ, Nielsen LK, Dinger ME, Mattick JS.

Genome Res. 2015 Feb;25(2):290-303. doi: 10.1101/gr.182899.114. Epub 2015 Jan 5.

14.

RNAcentral: an international database of ncRNA sequences.

RNAcentral Consortium, Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, Lowe TM, Zwieb CW, Wower J, Williams KP, Hudson CM, Gutell R, Clark MB, Dinger M, Quek XC, Bujnicki JM, Chua NH, Liu J, Wang H, Skogerbø G, Zhao Y, Chen R, Zhu W, Cole JR, Chai B, Huang HD, Huang HY, Cherry JM, Hatzigeorgiou A, Pruitt KD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D123-9. doi: 10.1093/nar/gku991. Epub 2014 Oct 28.

15.

lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs.

Quek XC, Thomson DW, Maag JL, Bartonicek N, Signal B, Clark MB, Gloss BS, Dinger ME.

Nucleic Acids Res. 2015 Jan;43(Database issue):D168-73. doi: 10.1093/nar/gku988. Epub 2014 Oct 20.

16.

Fluoride use in caries prevention in the primary care setting.

Clark MB, Slayton RL; Section on Oral Health.

Pediatrics. 2014 Sep;134(3):626-33. doi: 10.1542/peds.2014-1699. Review.

17.

Targeted sequencing for gene discovery and quantification using RNA CaptureSeq.

Mercer TR, Clark MB, Crawford J, Brunck ME, Gerhardt DJ, Taft RJ, Nielsen LK, Dinger ME, Mattick JS.

Nat Protoc. 2014 May;9(5):989-1009. doi: 10.1038/nprot.2014.058. Epub 2014 Apr 3.

PMID:
24705597
18.

The dark matter rises: the expanding world of regulatory RNAs.

Clark MB, Choudhary A, Smith MA, Taft RJ, Mattick JS.

Essays Biochem. 2013;54:1-16. doi: 10.1042/bse0540001. Review.

PMID:
23829523
19.

DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.

Mercer TR, Edwards SL, Clark MB, Neph SJ, Wang H, Stergachis AB, John S, Sandstrom R, Li G, Sandhu KS, Ruan Y, Nielsen LK, Mattick JS, Stamatoyannopoulos JA.

Nat Genet. 2013 Aug;45(8):852-9. doi: 10.1038/ng.2677. Epub 2013 Jun 23.

20.

A pediatric case of severe pandysautonomia responsive to plasmapheresis.

Clark MB, Davis T.

J Child Neurol. 2013 Dec;28(12):1716-9. doi: 10.1177/0883073812474099. Epub 2013 Jan 28. Review.

PMID:
23358630
21.

Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes.

Gascoigne DK, Cheetham SW, Cattenoz PB, Clark MB, Amaral PP, Taft RJ, Wilhelm D, Dinger ME, Mattick JS.

Bioinformatics. 2012 Dec 1;28(23):3042-50. doi: 10.1093/bioinformatics/bts582. Epub 2012 Oct 7.

PMID:
23044541
22.

Genome-wide analysis of long noncoding RNA stability.

Clark MB, Johnston RL, Inostroza-Ponta M, Fox AH, Fortini E, Moscato P, Dinger ME, Mattick JS.

Genome Res. 2012 May;22(5):885-98. doi: 10.1101/gr.131037.111. Epub 2012 Mar 9.

23.

RNA lights up.

Mattick JS, Clark MB.

Nat Biotechnol. 2011 Oct 13;29(10):883-4. doi: 10.1038/nbt.2003. No abstract available.

PMID:
21997629
24.

The reality of pervasive transcription.

Clark MB, Amaral PP, Schlesinger FJ, Dinger ME, Taft RJ, Rinn JL, Ponting CP, Stadler PF, Morris KV, Morillon A, Rozowsky JS, Gerstein MB, Wahlestedt C, Hayashizaki Y, Carninci P, Gingeras TR, Mattick JS.

PLoS Biol. 2011 Jul;9(7):e1000625; discussion e1001102. doi: 10.1371/journal.pbio.1000625. Epub 2011 Jul 12. No abstract available.

25.

SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer.

Askarian-Amiri ME, Crawford J, French JD, Smart CE, Smith MA, Clark MB, Ru K, Mercer TR, Thompson ER, Lakhani SR, Vargas AC, Campbell IG, Brown MA, Dinger ME, Mattick JS.

RNA. 2011 May;17(5):878-91. doi: 10.1261/rna.2528811. Epub 2011 Apr 1.

26.

Long noncoding RNAs in cell biology.

Clark MB, Mattick JS.

Semin Cell Dev Biol. 2011 Jun;22(4):366-76. doi: 10.1016/j.semcdb.2011.01.001. Epub 2011 Jan 20. Review.

PMID:
21256239
27.

lncRNAdb: a reference database for long noncoding RNAs.

Amaral PP, Clark MB, Gascoigne DK, Dinger ME, Mattick JS.

Nucleic Acids Res. 2011 Jan;39(Database issue):D146-51. doi: 10.1093/nar/gkq1138. Epub 2010 Nov 25.

28.

Safety and efficacy of topical diclofenac sodium 1% gel in knee osteoarthritis: a randomized controlled trial.

Baraf HS, Gold MS, Clark MB, Altman RD.

Phys Sportsmed. 2010 Jun;38(2):19-28. doi: 10.3810/psm.2010.06.1779.

PMID:
20631460
29.

Correlation of pain relief with physical function in hand osteoarthritis: randomized controlled trial post hoc analysis.

Barthel HR, Peniston JH, Clark MB, Gold MS, Altman RD.

Arthritis Res Ther. 2010;12(1):R7. doi: 10.1186/ar2906. Epub 2010 Jan 11.

30.

Mammalian gene PEG10 expresses two reading frames by high efficiency -1 frameshifting in embryonic-associated tissues.

Clark MB, Jänicke M, Gottesbühren U, Kleffmann T, Legge M, Poole ES, Tate WP.

J Biol Chem. 2007 Dec 28;282(52):37359-69. Epub 2007 Oct 16.

31.

Hereditary nonpolyposis colorectal cancer (Lynch Syndrome) in Argentina: report from a referral hospital register.

Vaccaro CA, Bonadeo F, Roverano AV, Peltomaki P, Bala S, Renkonen E, Redal MA, Mocetti E, Mullen E, Ojea-Quintana G, Benati ML, Rivello HG, Clark MB, Lynch JF, Lynch HT.

Dis Colon Rectum. 2007 Oct;50(10):1604-11.

PMID:
17846840
32.

Poor R wave progression revisited.

Clark MB.

J Insur Med. 2005;37(4):318-9. No abstract available.

PMID:
16459957
33.

Prophylactic surgery to reduce the risk of gynecologic cancers in the Lynch syndrome.

Schmeler KM, Lynch HT, Chen LM, Munsell MF, Soliman PT, Clark MB, Daniels MS, White KG, Boyd-Rogers SG, Conrad PG, Yang KY, Rubin MM, Sun CC, Slomovitz BM, Gershenson DM, Lu KH.

N Engl J Med. 2006 Jan 19;354(3):261-9.

34.

American founder mutation for Lynch syndrome. Prevalence estimates and implications.

Lynch HT, de la Chapelle A, Hampel H, Wagner A, Fodde R, Lynch JF, Okimoto R, Clark MB, Coronel S, Trowonou A, Fu YX, Haynatzki GR, Gong G.

Cancer. 2006 Jan 15;106(2):448-52.

35.

Nursing telephone triage and its influence on parents' choice of care for febrile children.

Light PA, Hupcey JE, Clark MB.

J Pediatr Nurs. 2005 Dec;20(6):424-9.

PMID:
16298283
36.

Expectations for care: older adults' satisfaction with and trust in health care providers.

Hupcey JE, Clark MB, Hutcheson CR, Thompson VL.

J Gerontol Nurs. 2004 Nov;30(11):37-45.

PMID:
15575190
37.

Direct assessment of profilometric roughness variability from typical implant surface types.

Kohles SS, Clark MB, Brown CA, Kenealy JN.

Int J Oral Maxillofac Implants. 2004 Jul-Aug;19(4):510-6.

PMID:
15346747
38.

Screening adherence in BRCA1/2 families is associated with primary physicians' behavior.

Tinley ST, Houfek J, Watson P, Wenzel L, Clark MB, Coughlin S, Lynch HT.

Am J Med Genet A. 2004 Feb 15;125A(1):5-11.

PMID:
14755459
39.

The development of trust in parents of hospitalized children.

Thompson VL, Hupcey JE, Clark MB.

J Spec Pediatr Nurs. 2003 Oct-Dec;8(4):137-47. Review.

PMID:
14677320
40.

Addressing the spiritual dimension in Canadian undergraduate nursing education.

Olson JK, Paul P, Douglass L, Clark MB, Simington J, Goddard N.

Can J Nurs Res. 2003 Sep;35(3):94-107.

PMID:
14603573
41.
42.

Cardiac catheterization: beyond stenoses.

Clark MB.

J Insur Med. 2001;33(3):262-4.

PMID:
11558408
43.

A phase I study of the antimetabolite (E)-2'-fluoromethylene-2'-deoxycytidine (MDL 101,731) administered as a twice-weekly infusion.

Burtness B, Belker M, Stoltz M, Peccerillo KM, Lamb LA, Chmael SE, McKeon A, Clark MB, Winship J, Marsh JC, Pizzorno G, DeVita VT Jr.

Cancer J. 2000 Sep-Oct;6(5):309-15.

PMID:
11079170
44.

A phase I study of paclitaxel for mobilization of peripheral blood progenitor cells.

Burtness BA, Psyrri A, Rose M, D'Andrea E, Staugaard-Hahn C, Henderson-Bakas M, Clark MB, Mechanic S, Krause D, Snyder E, Cooper RB, Abrantes J, Corringham R, Deisseroth A, Cooper DL.

Bone Marrow Transplant. 1999 Feb;23(4):311-5.

45.

Educating parish nurses.

Olson JK, Simington JA, Clark MB.

Can Nurse. 1998 Sep;94(8):40-4.

PMID:
9923218
46.

Power imbalance--evolving theory in need of research.

Clark MB.

West J Nurs Res. 1998 Oct;20(5):517-20. No abstract available.

PMID:
9775735
47.

Consistency between US dietary fat intake and serum total cholesterol concentrations: the National Health and Nutrition Examination Surveys.

Ernst ND, Sempos CT, Briefel RR, Clark MB.

Am J Clin Nutr. 1997 Oct;66(4 Suppl):965S-972S. doi: 10.1093/ajcn/66.4.965S.

PMID:
9322575
48.

Cardiovascular health risks related to overweight.

Ernst ND, Obarzanek E, Clark MB, Briefel RR, Brown CD, Donato K.

J Am Diet Assoc. 1997 Jul;97(7 Suppl):S47-51. Review.

PMID:
9216567
49.

A promotion ladder for teachers at Harvard Medical School: experience and challenges.

Lovejoy FH Jr, Clark MB.

Acad Med. 1995 Dec;70(12):1079-86.

PMID:
7495451
50.

Brain spectrin: of mice and men.

Goodman SR, Zimmer WE, Clark MB, Zagon IS, Barker JE, Bloom ML.

Brain Res Bull. 1995;36(6):593-606. Review.

PMID:
7757495

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