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Items: 25

1.

Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar.

Clifton-Brown J, Harfouche A, Casler MD, Dylan Jones H, Macalpine WJ, Murphy-Bokern D, Smart LB, Adler A, Ashman C, Awty-Carroll D, Bastien C, Bopper S, Botnari V, Brancourt-Hulmel M, Chen Z, Clark LV, Cosentino S, Dalton S, Davey C, Dolstra O, Donnison I, Flavell R, Greef J, Hanley S, Hastings A, Hertzberg M, Hsu TW, Huang LS, Iurato A, Jensen E, Jin X, Jørgensen U, Kiesel A, Kim DS, Liu J, McCalmont JP, McMahon BG, Mos M, Robson P, Sacks EJ, Sandu A, Scalici G, Schwarz K, Scordia D, Shafiei R, Shield I, Slavov G, Stanton BJ, Swaminathan K, Taylor G, Torres AF, Trindade LM, Tschaplinski T, Tuskan GA, Yamada T, Yeon Yu C, Zalesny RS Jr, Zong J, Lewandowski I.

Glob Change Biol Bioenergy. 2019 Jan;11(1):118-151. doi: 10.1111/gcbb.12566. Epub 2018 Oct 23.

2.

polyRAD: Genotype Calling with Uncertainty from Sequencing Data in Polyploids and Diploids.

Clark LV, Lipka AE, Sacks EJ.

G3 (Bethesda). 2019 Mar 7;9(3):663-673. doi: 10.1534/g3.118.200913.

3.

Population structure of Miscanthus sacchariflorus reveals two major polyploidization events, tetraploid-mediated unidirectional introgression from diploid M. sinensis, and diversity centred around the Yellow Sea.

Clark LV, Jin X, Petersen KK, Anzoua KG, Bagmet L, Chebukin P, Deuter M, Dzyubenko E, Dzyubenko N, Heo K, Johnson DA, Jørgensen U, Kjeldsen JB, Nagano H, Peng J, Sabitov A, Yamada T, Yoo JH, Yu CY, Long SP, Sacks EJ.

Ann Bot. 2018 Sep 20. doi: 10.1093/aob/mcy161. [Epub ahead of print]

PMID:
30247525
4.

Structural Capacitance in Protein Evolution and Human Diseases.

Li C, Clark LVT, Zhang R, Porebski BT, McCoey JM, Borg NA, Webb GI, Kass I, Buckle M, Song J, Woolfson A, Buckle AM.

J Mol Biol. 2018 Sep 14;430(18 Pt B):3200-3217. doi: 10.1016/j.jmb.2018.06.051. Epub 2018 Jul 3.

PMID:
30111491
5.

Graded exercise self-help for chronic fatigue syndrome in GETSET - Authors' reply.

Clark LV, Pesola F, Thomas JM, Vergara-Williamson M, Beynon M, White PD.

Lancet. 2018 Mar 24;391(10126):1162. doi: 10.1016/S0140-6736(18)30684-6. No abstract available.

PMID:
29595495
6.

Response to the editorial by Dr Geraghty.

White PD, Chalder T, Sharpe M, Angus BJ, Baber HL, Bavinton J, Burgess M, Clark LV, Cox DL, DeCesare JC, Goldsmith KA, Johnson AL, McCrone P, Murphy G, Murphy M, O'Dowd H, Potts L, Walwyn R, Wilks D.

J Health Psychol. 2017 Aug;22(9):1113-1117. doi: 10.1177/1359105316688953. Epub 2017 Jan 24.

PMID:
28805524
7.

Cytokine responses to exercise and activity in patients with chronic fatigue syndrome: case-control study.

Clark LV, Buckland M, Murphy G, Taylor N, Vleck V, Mein C, Wozniak E, Smuk M, White PD.

Clin Exp Immunol. 2017 Dec;190(3):360-371. doi: 10.1111/cei.13023. Epub 2017 Oct 11.

8.

Guided graded exercise self-help plus specialist medical care versus specialist medical care alone for chronic fatigue syndrome (GETSET): a pragmatic randomised controlled trial.

Clark LV, Pesola F, Thomas JM, Vergara-Williamson M, Beynon M, White PD.

Lancet. 2017 Jul 22;390(10092):363-373. doi: 10.1016/S0140-6736(16)32589-2. Epub 2017 Jun 22.

9.

Resolving microsatellite genotype ambiguity in populations of allopolyploid and diploidized autopolyploid organisms using negative correlations between allelic variables.

Clark LV, Schreier AD.

Mol Ecol Resour. 2017 Sep;17(5):1090-1103. doi: 10.1111/1755-0998.12639. Epub 2017 Jan 5.

PMID:
27868358
10.

Ecological characteristics and in situ genetic associations for yield-component traits of wild Miscanthus from eastern Russia.

Clark LV, Dzyubenko E, Dzyubenko N, Bagmet L, Sabitov A, Chebukin P, Johnson DA, Kjeldsen JB, Petersen KK, Jørgensen U, Yoo JH, Heo K, Yu CY, Zhao H, Jin X, Peng J, Yamada T, Sacks EJ.

Ann Bot. 2016 Jul 24. pii: mcw137. [Epub ahead of print]

11.

TagDigger: user-friendly extraction of read counts from GBS and RAD-seq data.

Clark LV, Sacks EJ.

Source Code Biol Med. 2016 Jul 11;11:11. doi: 10.1186/s13029-016-0057-7. eCollection 2016.

12.

Graded Exercise Therapy Guided Self-Help Trial for Patients with Chronic Fatigue Syndrome (GETSET): Protocol for a Randomized Controlled Trial and Interview Study.

Clark LV, McCrone P, Ridge D, Cheshire A, Vergara-Williamson M, Pesola F, White PD.

JMIR Res Protoc. 2016 Jun 8;5(2):e70. doi: 10.2196/resprot.5395.

13.

Contrasting allelic distribution of CO/Hd1 homologues in Miscanthus sinensis from the East Asian mainland and the Japanese archipelago.

Nagano H, Clark LV, Zhao H, Peng J, Yoo JH, Heo K, Yu CY, Anzoua KG, Matsuo T, Sacks EJ, Yamada T.

J Exp Bot. 2015 Jul;66(14):4227-37. doi: 10.1093/jxb/erv292. Epub 2015 Jun 18.

14.

Genetic structure of Miscanthus sinensis and Miscanthus sacchariflorus in Japan indicates a gradient of bidirectional but asymmetric introgression.

Clark LV, Stewart JR, Nishiwaki A, Toma Y, Kjeldsen JB, Jørgensen U, Zhao H, Peng J, Yoo JH, Heo K, Yu CY, Yamada T, Sacks EJ.

J Exp Bot. 2015 Jul;66(14):4213-25. doi: 10.1093/jxb/eru511. Epub 2015 Jan 24.

15.

A footprint of past climate change on the diversity and population structure of Miscanthus sinensis.

Clark LV, Brummer JE, Głowacka K, Hall MC, Heo K, Peng J, Yamada T, Yoo JH, Yu CY, Zhao H, Long SP, Sacks EJ.

Ann Bot. 2014 Jul;114(1):97-107. doi: 10.1093/aob/mcu084. Epub 2014 Jun 10.

16.

Spontaneous hybrids between native and exotic Rubus in the Western United States produce offspring both by apomixis and by sexual recombination.

Clark LV, Jasieniuk M.

Heredity (Edinb). 2012 Nov;109(5):320-8. doi: 10.1038/hdy.2012.45. Epub 2012 Aug 1.

17.

Service use and costs for people with headache: a UK primary care study.

McCrone P, Seed PT, Dowson AJ, Clark LV, Goldstein LH, Morgan M, Ridsdale L.

J Headache Pain. 2011 Dec;12(6):617-23. doi: 10.1007/s10194-011-0362-0. Epub 2011 Jul 9.

18.

POLYSAT: an R package for polyploid microsatellite analysis.

Clark LV, Jasieniuk M.

Mol Ecol Resour. 2011 May;11(3):562-6. doi: 10.1111/j.1755-0998.2011.02985.x. Epub 2011 Feb 6.

PMID:
21481215
19.

Predictors of outcome in patients consulting their general practitioners for headache: a prospective study.

Goldstein LH, Seed PT, Clark LV, Dowson AJ, Jenkins LM, Ridsdale L.

Psychol Health. 2011 Jun;26(6):751-64. doi: 10.1080/08870446.2010.493217. Epub 2011 May 24.

PMID:
21432726
20.

Comparison of adaptive pacing therapy, cognitive behaviour therapy, graded exercise therapy, and specialist medical care for chronic fatigue syndrome (PACE): a randomised trial.

White PD, Goldsmith KA, Johnson AL, Potts L, Walwyn R, DeCesare JC, Baber HL, Burgess M, Clark LV, Cox DL, Bavinton J, Angus BJ, Murphy G, Murphy M, O'Dowd H, Wilks D, McCrone P, Chalder T, Sharpe M; PACE trial management group.

Lancet. 2011 Mar 5;377(9768):823-36. doi: 10.1016/S0140-6736(11)60096-2. Epub 2011 Feb 18.

21.

Chronic fatigue syndrome.

Clark LV, White PD.

J Rehabil Med. 2008 Nov;40(10):882-3; author reply 883-5. doi: 10.2340/16501977-0261. No abstract available.

22.

How do patients referred to neurologists for headache differ from those managed in primary care?

Ridsdale L, Clark LV, Dowson AJ, Goldstein LH, Jenkins L, McCrone P, Morgan M, Seed PT.

Br J Gen Pract. 2007 May;57(538):388-95.

23.

Headache: a 'suitable case' for behavioural treatment in primary care?

Symvoulakis EK, Clark LV, Dowson AJ, Jones R, Ridsdale L.

Br J Gen Pract. 2007 Mar;57(536):231-7.

24.

Application of in vivo and ex vivo magnetic resonance imaging for evaluation of tranilast on neointima formation following balloon angioplasty of the rat carotid artery.

Ohlstein EH, Romanic AM, Clark LV, Kapadia RD, Sarkar SK, Gagnon R, Chandra S.

Cardiovasc Res. 2000 Sep;47(4):759-68.

PMID:
10974224
25.

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