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Items: 1 to 50 of 173

1.

Updates to Binding MOAD (Mother of All Databases): Polypharmacology Tools and Their Utility in Drug Repurposing.

Smith RD, Clark JJ, Ahmed A, Orban ZJ, Dunbar JB Jr, Carlson HA.

J Mol Biol. 2019 Jun 14;431(13):2423-2433. doi: 10.1016/j.jmb.2019.05.024. Epub 2019 May 22.

PMID:
31125569
2.

Voluntary oral consumption of Δ9-tetrahydrocannabinol by adolescent rats impairs reward-predictive cue behaviors in adulthood.

Kruse LC, Cao JK, Viray K, Stella N, Clark JJ.

Neuropsychopharmacology. 2019 Jul;44(8):1406-1414. doi: 10.1038/s41386-019-0387-7. Epub 2019 Apr 10.

PMID:
30965351
3.

Patient-Driven Discovery, Therapeutic Targeting, and Post-Clinical Validation of a Novel AKT1 Fusion-Driven Cancer.

Slotkin EK, Diolaiti D, Shukla NN, Dela Cruz FS, Clark JJ, Gundem G, Yellapantula VD, Levine MF, You D, Ma P, Pachhal S, Ibanez Sanchez G, Benayed R, Jungbluth AA, Smyth LM, Mauguen A, Gushterova I, Ding H, Spraggon L, Darnell R, Califano A, Ladanyi M, Papaemmanuil E, Kung AL, Hyman DM, Roberts SS.

Cancer Discov. 2019 May;9(5):605-616. doi: 10.1158/2159-8290.CD-18-0953. Epub 2019 Mar 15.

PMID:
30877085
4.

Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures.

Clark JJ, Benson ML, Smith RD, Carlson HA.

PLoS Comput Biol. 2019 Jan 30;15(1):e1006705. doi: 10.1371/journal.pcbi.1006705. eCollection 2019 Jan.

5.

Failure of bumetanide to improve outcome after intracerebral hemorrhage in rat.

Wilkinson CM, Fedor BA, Aziz JR, Nadeau CA, Brar PS, Clark JJA, Colbourne F.

PLoS One. 2019 Jan 10;14(1):e0210660. doi: 10.1371/journal.pone.0210660. eCollection 2019.

6.

A Fatal Case of Louping-ill in a Dog: Immunolocalization and Full Genome Sequencing of the Virus.

Dagleish MP, Clark JJ, Robson C, Tucker M, Orton RJ, Rocchi MS.

J Comp Pathol. 2018 Nov;165:23-32. doi: 10.1016/j.jcpa.2018.09.004. Epub 2018 Oct 19.

7.

Composite kernel machine regression based on likelihood ratio test for joint testing of genetic and gene-environment interaction effect.

Zhao N, Zhang H, Clark JJ, Maity A, Wu MC.

Biometrics. 2019 Jun;75(2):625-637. doi: 10.1111/biom.13003. Epub 2019 Mar 30.

PMID:
30430548
8.

On-demand manufacturing of clinical-quality biopharmaceuticals.

Crowell LE, Lu AE, Love KR, Stockdale A, Timmick SM, Wu D, Wang YA, Doherty W, Bonnyman A, Vecchiarello N, Goodwine C, Bradbury L, Brady JR, Clark JJ, Colant NA, Cvetkovic A, Dalvie NC, Liu D, Liu Y, Mascarenhas CA, Matthews CB, Mozdzierz NJ, Shah KA, Wu SL, Hancock WS, Braatz RD, Cramer SM, Love JC.

Nat Biotechnol. 2018 Oct 1. doi: 10.1038/nbt.4262. [Epub ahead of print]

9.

Persistent Oxidative Stress in Vestibular Schwannomas After Stereotactic Radiation Therapy.

Robinett ZN, Bathla G, Wu A, Clark JJ, Sibenaller ZA, Wilson T, Kirby P, Allen BG, Hansen MR.

Otol Neurotol. 2018 Oct;39(9):1184-1190. doi: 10.1097/MAO.0000000000001935.

PMID:
30106845
10.

Developmental impairments in moral competence as mitigation in capital cases.

Walker R, Clark JJ, Monahan EC, Shechet A, Agharkar BS, Kheibari A, Victor Iii G.

Behav Sci Law. 2018 Jul 13. doi: 10.1002/bsl.2353. [Epub ahead of print]

PMID:
30004137
11.

The status of research ethics in social work.

Ferguson A, Clark JJ.

J Evid Inf Soc Work. 2018 Jul-Aug;15(4):351-370. doi: 10.1080/23761407.2018.1478756. Epub 2018 May 29.

PMID:
29843568
12.

Preventing infection in shoulder surgery.

Clark JJC, Abildgaard JT, Backes J, Hawkins RJ.

J Shoulder Elbow Surg. 2018 Jul;27(7):1333-1341. doi: 10.1016/j.jse.2017.12.028. Epub 2018 Feb 12. Review.

PMID:
29444755
13.

Maladaptive Decision Making in Adults with a History of Adolescent Alcohol use, in a Preclinical Model, Is Attributable to the Compromised Assignment of Incentive Value during Stimulus-Reward Learning.

Kruse LC, Schindler AG, Williams RG, Weber SJ, Clark JJ.

Front Behav Neurosci. 2017 Jul 25;11:134. doi: 10.3389/fnbeh.2017.00134. eCollection 2017.

14.

Blast-related disinhibition and risk seeking in mice and combat Veterans: Potential role for dysfunctional phasic dopamine release.

Schindler AG, Meabon JS, Pagulayan KF, Hendrickson RC, Meeker KD, Cline M, Li G, Sikkema C, Wilkinson CW, Perl DP, Raskind MR, Peskind ER, Clark JJ, Cook DG.

Neurobiol Dis. 2017 Oct;106:23-34. doi: 10.1016/j.nbd.2017.06.004. Epub 2017 Jun 12.

PMID:
28619545
15.

Inhibition of type I interferon induction and signalling by mosquito-borne flaviviruses.

Cumberworth SL, Clark JJ, Kohl A, Donald CL.

Cell Microbiol. 2017 May;19(5). doi: 10.1111/cmi.12737. Epub 2017 Mar 22. Review.

16.

Cutaneous carcinosarcoma: a series of six cases and a review of the literature.

Clark JJ, Bowen AR, Bowen GM, Hyngstrom JR, Hadley ML, Duffy K, Florell SR, Wada DA.

J Cutan Pathol. 2017 Jan;44(1):34-44. doi: 10.1111/cup.12843. Epub 2016 Nov 18. Review.

PMID:
27730657
17.

Full Genome Sequence and sfRNA Interferon Antagonist Activity of Zika Virus from Recife, Brazil.

Donald CL, Brennan B, Cumberworth SL, Rezelj VV, Clark JJ, Cordeiro MT, Freitas de Oliveira França R, Pena LJ, Wilkie GS, Da Silva Filipe A, Davis C, Hughes J, Varjak M, Selinger M, Zuvanov L, Owsianka AM, Patel AH, McLauchlan J, Lindenbach BD, Fall G, Sall AA, Biek R, Rehwinkel J, Schnettler E, Kohl A.

PLoS Negl Trop Dis. 2016 Oct 5;10(10):e0005048. doi: 10.1371/journal.pntd.0005048. eCollection 2016 Oct.

18.

Usage, adherence and attrition: how new mothers engage with a nurse-moderated web-based intervention to support maternal and infant health. A 9-month observational study.

Sawyer MG, Reece CE, Bowering K, Jeffs D, Sawyer AC, Peters JD, Mpundu-Kaambwa C, Clark JJ, McDonald D, Mittinty MN, Lynch JW.

BMJ Open. 2016 Aug 5;6(8):e009967. doi: 10.1136/bmjopen-2015-009967.

19.

The effect of omalizumab dosing and frequency in chronic idiopathic urticaria: Retrospective chart review.

Clark JJ, Secrest AM, Hull CM, Eliason MJ, Leiferman KM, Gleich GJ, Powell DL.

J Am Acad Dermatol. 2016 Jun;74(6):1274-6. doi: 10.1016/j.jaad.2015.12.052. No abstract available.

PMID:
27185439
20.

Community perceptions about the use of black salve.

Clark JJ, Woodcock A, Cipriano SD, Hyde MA, Edwards SL, Frost CJ, Eliason MJ.

J Am Acad Dermatol. 2016 May;74(5):1021-3. doi: 10.1016/j.jaad.2015.10.016. No abstract available.

PMID:
27085238
21.

Reversal of Alcohol-Induced Dysregulation in Dopamine Network Dynamics May Rescue Maladaptive Decision-making.

Schindler AG, Soden ME, Zweifel LS, Clark JJ.

J Neurosci. 2016 Mar 30;36(13):3698-708. doi: 10.1523/JNEUROSCI.4394-15.2016.

22.

Hierarchical Spatio-Temporal Probabilistic Graphical Model with Multiple Feature Fusion for Binary Facial Attribute Classification in Real-World Face Videos.

Demirkus M, Precup D, Clark JJ, Arbel T.

IEEE Trans Pattern Anal Mach Intell. 2016 Jun;38(6):1185-203. doi: 10.1109/TPAMI.2015.2481396. Epub 2015 Sep 23.

PMID:
26415152
23.

Health Behavior Decision-making in African-American Adults Diagnosed with Schizophrenia.

Findlay LJ, El-Mallakh P, Howard PB, Hatcher J, Clark JJ.

Issues Ment Health Nurs. 2015 Jul;36(7):493-504. doi: 10.3109/01612840.2014.1002646.

PMID:
26309168
24.

Automated pipeline for rapid production and screening of HIV-specific monoclonal antibodies using pichia pastoris.

Shah KA, Clark JJ, Goods BA, Politano TJ, Mozdzierz NJ, Zimnisky RM, Leeson RL, Love JC, Love KR.

Biotechnol Bioeng. 2015 Dec;112(12):2624-9. doi: 10.1002/bit.25663. Epub 2015 Jul 31.

25.

Adolescent Alcohol Exposure Amplifies the Incentive Value of Reward-Predictive Cues Through Potentiation of Phasic Dopamine Signaling.

Spoelder M, Tsutsui KT, Lesscher HM, Vanderschuren LJ, Clark JJ.

Neuropsychopharmacology. 2015 Dec;40(13):2873-85. doi: 10.1038/npp.2015.139. Epub 2015 May 14.

26.

Recent improvements to Binding MOAD: a resource for protein-ligand binding affinities and structures.

Ahmed A, Smith RD, Clark JJ, Dunbar JB Jr, Carlson HA.

Nucleic Acids Res. 2015 Jan;43(Database issue):D465-9. doi: 10.1093/nar/gku1088. Epub 2014 Nov 6.

27.

An inverse Yarbus process: predicting observers' task from eye movement patterns.

Haji-Abolhassani A, Clark JJ.

Vision Res. 2014 Oct;103:127-42. doi: 10.1016/j.visres.2014.08.014. Epub 2014 Aug 28.

28.

Dynamic shaping of dopamine signals during probabilistic Pavlovian conditioning.

Hart AS, Clark JJ, Phillips PEM.

Neurobiol Learn Mem. 2015 Jan;117:84-92. doi: 10.1016/j.nlm.2014.07.010. Epub 2014 Aug 27.

29.

Primary culture of human vestibular schwannomas.

Schularick NM, Clark JJ, Hansen MR.

J Vis Exp. 2014 Jul 20;(89). doi: 10.3791/51093.

30.

p75NTR is highly expressed in vestibular schwannomas and promotes cell survival by activating nuclear transcription factor κB.

Ahmad I, Yue WY, Fernando A, Clark JJ, Woodson EA, Hansen MR.

Glia. 2014 Oct;62(10):1699-712. doi: 10.1002/glia.22709. Epub 2014 Jun 26.

31.

Experimental predictions drawn from a computational model of sign-trackers and goal-trackers.

Lesaint F, Sigaud O, Clark JJ, Flagel SB, Khamassi M.

J Physiol Paris. 2015 Feb-Jun;109(1-3):78-86. doi: 10.1016/j.jphysparis.2014.06.001. Epub 2014 Jun 20.

32.

Thyroid fine-needle aspiration cytology: performance data of neoplastic and malignant cases as identified from 1558 responses in the ASCP Non-GYN Assessment program thyroid fine-needle performance data.

Eilers SG, LaPolice P, Mukunyadzi P, Kapur U, Wendel Spiczka A, Shah A, Saleh H, Adeniran A, Nunez A, Balachandran I, Clark JJ, Lemon L.

Cancer Cytopathol. 2014 Oct;122(10):745-50. doi: 10.1002/cncy.21440. Epub 2014 Jun 9.

33.

Chronic alcohol intake during adolescence, but not adulthood, promotes persistent deficits in risk-based decision making.

Schindler AG, Tsutsui KT, Clark JJ.

Alcohol Clin Exp Res. 2014 Jun;38(6):1622-9. doi: 10.1111/acer.12404. Epub 2014 Apr 1.

34.

Extent, characterization, and sources of soil lead contamination in small-urban residential neighborhoods.

Clark JJ, Knudsen AC.

J Environ Qual. 2013 Sep;42(5):1498-506. doi: 10.2134/jeq2013.03.0100.

PMID:
24216427
35.

A computational model for task inference in visual search.

Haji-Abolhassani A, Clark JJ.

J Vis. 2013 Sep 26;13(11). pii: 29. doi: 10.1167/13.3.29.

PMID:
24071637
36.

Oral health in older adults with dementia living in different environments: a propensity analysis.

Chen X, Clark JJ, Naorungroj S.

Spec Care Dentist. 2013 Sep-Oct;33(5):239-47. doi: 10.1111/scd.12006. Epub 2013 Jan 4.

PMID:
23980557
37.

Dental caries in older adults in the last year of life.

Chen X, Clark JJ, Preisser JS, Naorungroj S, Shuman SK.

J Am Geriatr Soc. 2013 Aug;61(8):1345-50. doi: 10.1111/jgs.12363. Epub 2013 Jul 18.

38.

Cognitive impairment, oral self-care function and dental caries severity in community-dwelling older adults.

Chen X, Clark JJ, Chen H, Naorungroj S.

Gerodontology. 2015 Mar;32(1):53-61. doi: 10.1111/ger.12061. Epub 2013 Jun 12.

39.

Inhibition of c-Jun N-terminal kinase activity enhances vestibular schwannoma cell sensitivity to gamma irradiation.

Yue WY, Clark JJ, Telisak M, Hansen MR.

Neurosurgery. 2013 Sep;73(3):506-16. doi: 10.1227/01.neu.0000431483.10031.89.

40.

Transformation of social networks in the late pre-Hispanic US Southwest.

Mills BJ, Clark JJ, Peeples MA, Haas WR Jr, Roberts JM Jr, Hill JB, Huntley DL, Borck L, Breiger RL, Clauset A, Shackley MS.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):5785-90. doi: 10.1073/pnas.1219966110. Epub 2013 Mar 25.

41.

Assessment of dentally related functional competency for older adults with cognitive impairment--a survey for special-care dental professionals.

Chen X, Clark JJ.

Spec Care Dentist. 2013 Mar-Apr;33(2):48-55. doi: 10.1111/scd.12005. Epub 2012 Dec 26.

42.

Dopamine encoding of Pavlovian incentive stimuli diminishes with extended training.

Clark JJ, Collins AL, Sanford CA, Phillips PE.

J Neurosci. 2013 Feb 20;33(8):3526-32. doi: 10.1523/JNEUROSCI.5119-12.2013.

43.

James J. Clark on Stan Einstein's "Drug user treatment blindness".

Clark JJ.

Subst Use Misuse. 2012 Nov-Dec;47(13-14):1545. doi: 10.3109/10826084.2012.725628. No abstract available.

PMID:
23186468
44.

A brief personal meditation about failure and defeat.

Clark JJ.

Subst Use Misuse. 2012 Nov-Dec;47(13-14):1523-6. doi: 10.3109/10826084.2012.706095.

PMID:
23186459
45.

Implementation issues in an innovative rural substance misuser treatment program.

Godlaski TM, Clark JJ.

Subst Use Misuse. 2012 Nov-Dec;47(13-14):1439-50. doi: 10.3109/10826084.2012.705689.

PMID:
23186435
46.

James J. Clark on John Kleinig's "Framing failure".

Clark JJ.

Subst Use Misuse. 2012 Nov-Dec;47(13-14):1379-81. doi: 10.3109/10826084.2012.723488. No abstract available.

PMID:
23186416
47.

Hematopoietic stem cell transplantation in unique pediatric populations: adolescents, infants, and children with down syndrome.

Duncan CN, Clark JJ, Silverman LB.

Biol Blood Marrow Transplant. 2013 Jan;19(1 Suppl):S52-7. doi: 10.1016/j.bbmt.2012.10.018. Epub 2012 Oct 17. Review. No abstract available.

48.

Pavlovian valuation systems in learning and decision making.

Clark JJ, Hollon NG, Phillips PE.

Curr Opin Neurobiol. 2012 Dec;22(6):1054-61. doi: 10.1016/j.conb.2012.06.004. Epub 2012 Jun 28. Review.

49.

Length of tooth survival in older adults with complex medical, functional and dental backgrounds.

Chen X, Clark JJ, Naorungroj S.

J Am Dent Assoc. 2012 Jun;143(6):566-78.

PMID:
22653936
50.

Altered risk-based decision making following adolescent alcohol use results from an imbalance in reinforcement learning in rats.

Clark JJ, Nasrallah NA, Hart AS, Collins AL, Bernstein IL, Phillips PE.

PLoS One. 2012;7(5):e37357. doi: 10.1371/journal.pone.0037357. Epub 2012 May 16.

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