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Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep.

Salavati M, Bush SJ, Palma-Vera S, McCulloch MEB, Hume DA, Clark EL.

Front Genet. 2019 Sep 19;10:863. doi: 10.3389/fgene.2019.00863. eCollection 2019.


Cognitive Impairment and Predicting Response to Treatment in an Intensive Clinical Program for Post-9/11 Veterans With Posttraumatic Stress Disorder.

Tanev KS, Federico LE, Terry DP, Clark EL, Iverson GL.

J Neuropsychiatry Clin Neurosci. 2019 Fall;31(4):337-345. doi: 10.1176/appi.neuropsych.18090208. Epub 2019 Apr 25.


Explaining the Incorporation of Oxygen Derived from Solvent Water into the Oxygenated Products of CO Reduction over Cu.

Clark EL, Wong J, Garza AJ, Lin Z, Head-Gordon M, Bell AT.

J Am Chem Soc. 2019 Mar 13;141(10):4191-4193. doi: 10.1021/jacs.8b13201. Epub 2019 Mar 1.


Electrochemical flow cell enabling operando probing of electrocatalyst surfaces by X-ray spectroscopy and diffraction.

Farmand M, Landers AT, Lin JC, Feaster JT, Beeman JW, Ye Y, Clark EL, Higgins D, Yano J, Davis RC, Mehta A, Jaramillo TF, Hahn C, Drisdell WS.

Phys Chem Chem Phys. 2019 Mar 6;21(10):5402-5408. doi: 10.1039/c8cp07423b.


Comprehensive Transcriptional Profiling of the Gastrointestinal Tract of Ruminants from Birth to Adulthood Reveals Strong Developmental Stage Specific Gene Expression.

Bush SJ, McCulloch MEB, Muriuki C, Salavati M, Davis GM, Farquhar IL, Lisowski ZM, Archibald AL, Hume DA, Clark EL.

G3 (Bethesda). 2019 Feb 7;9(2):359-373. doi: 10.1534/g3.118.200810.


Species-Specific Transcriptional Regulation of Genes Involved in Nitric Oxide Production and Arginine Metabolism in Macrophages.

Young R, Bush SJ, Lefevre L, McCulloch MEB, Lisowski ZM, Muriuki C, Waddell LA, Sauter KA, Pridans C, Clark EL, Hume DA.

Immunohorizons. 2018 Jan 1;2(1):27-37. doi: 10.4049/immunohorizons.1700073.


ADGRE1 (EMR1, F4/80) Is a Rapidly-Evolving Gene Expressed in Mammalian Monocyte-Macrophages.

Waddell LA, Lefevre L, Bush SJ, Raper A, Young R, Lisowski ZM, McCulloch MEB, Muriuki C, Sauter KA, Clark EL, Irvine KM, Pridans C, Hope JC, Hume DA.

Front Immunol. 2018 Oct 1;9:2246. doi: 10.3389/fimmu.2018.02246. eCollection 2018.


Tailoring Morphology of Cu-Ag Nanocrescents and Core-Shell Nanocrystals Guided by a Thermodynamic Model.

Osowiecki WT, Ye X, Satish P, Bustillo KC, Clark EL, Alivisatos AP.

J Am Chem Soc. 2018 Jul 11;140(27):8569-8577. doi: 10.1021/jacs.8b04558. Epub 2018 Jun 29.


Direct Observation of the Local Reaction Environment during the Electrochemical Reduction of CO2.

Clark EL, Bell AT.

J Am Chem Soc. 2018 Jun 6;140(22):7012-7020. doi: 10.1021/jacs.8b04058. Epub 2018 May 24.


Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome.

Bush SJ, Muriuki C, McCulloch MEB, Farquhar IL, Clark EL, Hume DA.

Genet Sel Evol. 2018 Apr 24;50(1):20. doi: 10.1186/s12711-018-0391-0.


The Aging Well through Interaction and Scientific Education (AgeWISE) Program.

O'Connor MK, Kraft ML, Daley R, Sugarman MA, Clark EL, Scoglio AAJ, Shirk SD.

Clin Gerontol. 2018 Oct-Dec;41(5):412-423. doi: 10.1080/07317115.2017.1387212. Epub 2017 Dec 8.


The influence of the solid to plasma phase transition on the generation of plasma instabilities.

Kaselouris E, Dimitriou V, Fitilis I, Skoulakis A, Koundourakis G, Clark EL, Bakarezos Μ, Nikolos IK, Papadogiannis NA, Tatarakis M.

Nat Commun. 2017 Nov 23;8(1):1713. doi: 10.1038/s41467-017-02000-6.


Electrochemical CO2 Reduction over Compressively Strained CuAg Surface Alloys with Enhanced Multi-Carbon Oxygenate Selectivity.

Clark EL, Hahn C, Jaramillo TF, Bell AT.

J Am Chem Soc. 2017 Nov 8;139(44):15848-15857. doi: 10.1021/jacs.7b08607. Epub 2017 Oct 25.


A high resolution atlas of gene expression in the domestic sheep (Ovis aries).

Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA.

PLoS Genet. 2017 Sep 15;13(9):e1006997. doi: 10.1371/journal.pgen.1006997. eCollection 2017 Sep.


Nanoporous gold assemblies of calixarene-phosphine-capped colloids.

Schöttle C, Clark EL, Harker A, Solovyov A, Bell AT, Katz A.

Chem Commun (Camb). 2017 Oct 3;53(79):10870-10873. doi: 10.1039/c7cc05116f.


The genomic architecture of mastitis resistance in dairy sheep.

Banos G, Bramis G, Bush SJ, Clark EL, McCulloch MEB, Smith J, Schulze G, Arsenos G, Hume DA, Psifidi A.

BMC Genomics. 2017 Aug 16;18(1):624. doi: 10.1186/s12864-017-3982-1.


Integration of quantitated expression estimates from polyA-selected and rRNA-depleted RNA-seq libraries.

Bush SJ, McCulloch MEB, Summers KM, Hume DA, Clark EL.

BMC Bioinformatics. 2017 Jun 13;18(1):301. doi: 10.1186/s12859-017-1714-9.


Performance validity and processing speed in a VA Polytrauma sample.

Ashendorf L, Clark EL, Sugarman MA.

Clin Neuropsychol. 2017 Jul;31(5):857-866. doi: 10.1080/13854046.2017.1285961. Epub 2017 Feb 10.


Eimeria species occurrence varies between geographic regions and poultry production systems and may influence parasite genetic diversity.

Chengat Prakashbabu B, Thenmozhi V, Limon G, Kundu K, Kumar S, Garg R, Clark EL, Srinivasa Rao AS, Raj DG, Raman M, Banerjee PS, Tomley FM, Guitian J, Blake DP.

Vet Parasitol. 2017 Jan 15;233:62-72. doi: 10.1016/j.vetpar.2016.12.003. Epub 2016 Dec 6.


Application of a new PCR-RFLP panel suggests a restricted population structure for Eimeria tenella in UK and Irish chickens.

Pegg E, Doyle K, Clark EL, Jatau ID, Tomley FM, Blake DP.

Vet Parasitol. 2016 Oct 15;229:60-67. doi: 10.1016/j.vetpar.2016.09.018. Epub 2016 Sep 26.


Development of Rare Bacterial Monosaccharide Analogs for Metabolic Glycan Labeling in Pathogenic Bacteria.

Clark EL, Emmadi M, Krupp KL, Podilapu AR, Helble JD, Kulkarni SS, Dube DH.

ACS Chem Biol. 2016 Dec 16;11(12):3365-3373. Epub 2016 Oct 28.


Are Eimeria Genetically Diverse, and Does It Matter?

Clark EL, Tomley FM, Blake DP.

Trends Parasitol. 2017 Mar;33(3):231-241. doi: 10.1016/ Epub 2016 Sep 1. Review.


Cryptic Eimeria genotypes are common across the southern but not northern hemisphere.

Clark EL, Macdonald SE, Thenmozhi V, Kundu K, Garg R, Kumar S, Ayoade S, Fornace KM, Jatau ID, Moftah A, Nolan MJ, Sudhakar NR, Adebambo AO, Lawal IA, Álvarez Zapata R, Awuni JA, Chapman HD, Karimuribo E, Mugasa CM, Namangala B, Rushton J, Suo X, Thangaraj K, Srinivasa Rao AS, Tewari AK, Banerjee PS, Dhinakar Raj G, Raman M, Tomley FM, Blake DP.

Int J Parasitol. 2016 Aug;46(9):537-44. doi: 10.1016/j.ijpara.2016.05.006. Epub 2016 Jun 29.


Thermodynamic and achievable efficiencies for solar-driven electrochemical reduction of carbon dioxide to transportation fuels.

Singh MR, Clark EL, Bell AT.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):E6111-8. doi: 10.1073/pnas.1519212112. Epub 2015 Oct 26.


Population, genetic, and antigenic diversity of the apicomplexan Eimeria tenella and their relevance to vaccine development.

Blake DP, Clark EL, Macdonald SE, Thenmozhi V, Kundu K, Garg R, Jatau ID, Ayoade S, Kawahara F, Moftah A, Reid AJ, Adebambo AO, Álvarez Zapata R, Srinivasa Rao AS, Thangaraj K, Banerjee PS, Dhinakar-Raj G, Raman M, Tomley FM.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):E5343-50. doi: 10.1073/pnas.1506468112. Epub 2015 Sep 9.


Differential Electrochemical Mass Spectrometer Cell Design for Online Quantification of Products Produced during Electrochemical Reduction of CO₂.

Clark EL, Singh MR, Kwon Y, Bell AT.

Anal Chem. 2015 Aug 4;87(15):8013-20. doi: 10.1021/acs.analchem.5b02080. Epub 2015 Jul 23.


Note: A novel trigger generator for a pseudospark switch.

Chatzakis J, Hassan SM, Clark EL, Lee P, Tatarakis M.

Rev Sci Instrum. 2015 Jan;86(1):016108. doi: 10.1063/1.4905432.


Comparison of lodgepole and jack pine resin chemistry: implications for range expansion by the mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae).

Clark EL, Pitt C, Carroll AL, Lindgren BS, Huber DP.

PeerJ. 2014 Feb 11;2:e240. doi: 10.7717/peerj.240. eCollection 2014.


An inexpensive feeding bioassay technique for stored-product insects.

Clark EL, Isitt R, Plettner E, Fields PG, Huber DP.

J Econ Entomol. 2014 Feb;107(1):455-61.


Occurrence of Eimeria species parasites on small-scale commercial chicken farms in Africa and indication of economic profitability.

Fornace KM, Clark EL, Macdonald SE, Namangala B, Karimuribo E, Awuni JA, Thieme O, Blake DP, Rushton J.

PLoS One. 2013 Dec 31;8(12):e84254. doi: 10.1371/journal.pone.0084254. eCollection 2013.


An optimised protocol for molecular identification of Eimeria from chickens.

Kumar S, Garg R, Moftah A, Clark EL, Macdonald SE, Chaudhry AS, Sparagano O, Banerjee PS, Kundu K, Tomley FM, Blake DP.

Vet Parasitol. 2014 Jan 17;199(1-2):24-31. doi: 10.1016/j.vetpar.2013.09.026. Epub 2013 Sep 28.


Measuring fast electron spectra and laser absorption in relativistic laser-solid interactions using differential bremsstrahlung photon detectors.

Scott RH, Clark EL, Pérez F, Streeter MJ, Davies JR, Schlenvoigt HP, Santos JJ, Hulin S, Lancaster KL, Baton SD, Rose SJ, Norreys PA.

Rev Sci Instrum. 2013 Aug;84(8):083505. doi: 10.1063/1.4816332.


p68/DdX5 supports β-catenin & RNAP II during androgen receptor mediated transcription in prostate cancer.

Clark EL, Hadjimichael C, Temperley R, Barnard A, Fuller-Pace FV, Robson CN.

PLoS One. 2013;8(1):e54150. doi: 10.1371/journal.pone.0054150. Epub 2013 Jan 17.


How conserved are the bacterial communities associated with aphids? A detailed assessment of the Brevicoryne brassicae (Hemiptera: Aphididae) using 16S rDNA.

Clark EL, Daniell TJ, Wishart J, Hubbard SF, Karley AJ.

Environ Entomol. 2012 Dec;41(6):1386-97. doi: 10.1603/EN12152.


Genetic mapping and coccidial parasites: past achievements and future prospects.

Clark EL, Blake DP.

J Biosci. 2012 Nov;37(5):879-86. Review.


Transcriptome and full-length cDNA resources for the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major insect pest of pine forests.

Keeling CI, Henderson H, Li M, Yuen M, Clark EL, Fraser JD, Huber DP, Liao NY, Docking TR, Birol I, Chan SK, Taylor GA, Palmquist D, Jones SJ, Bohlmann J.

Insect Biochem Mol Biol. 2012 Aug;42(8):525-36. doi: 10.1016/j.ibmb.2012.03.010. Epub 2012 Apr 7.


EmaxDB: Availability of a first draft genome sequence for the apicomplexan Eimeria maxima.

Blake DP, Alias H, Billington KJ, Clark EL, Mat-Isa MN, Mohamad AF, Mohd-Amin MR, Tay YL, Smith AL, Tomley FM, Wan KL.

Mol Biochem Parasitol. 2012 Jul;184(1):48-51. doi: 10.1016/j.molbiopara.2012.03.004. Epub 2012 Mar 23.


Orexin receptor 2 expression in the posterior hypothalamus rescues sleepiness in narcoleptic mice.

Mochizuki T, Arrigoni E, Marcus JN, Clark EL, Yamamoto M, Honer M, Borroni E, Lowell BB, Elmquist JK, Scammell TE.

Proc Natl Acad Sci U S A. 2011 Mar 15;108(11):4471-6. doi: 10.1073/pnas.1012456108. Epub 2011 Feb 28.


Observation of postsoliton expansion following laser propagation through an underdense plasma.

Sarri G, Singh DK, Davies JR, Fiuza F, Lancaster KL, Clark EL, Hassan S, Jiang J, Kageiwa N, Lopes N, Rehman A, Russo C, Scott RH, Tanimoto T, Najmudin Z, Tanaka KA, Tatarakis M, Borghesi M, Norreys PA.

Phys Rev Lett. 2010 Oct 22;105(17):175007. Epub 2010 Oct 22.


Insect endosymbionts: manipulators of insect herbivore trophic interactions?

Clark EL, Karley AJ, Hubbard SF.

Protoplasma. 2010 Aug;244(1-4):25-51. doi: 10.1007/s00709-010-0156-2. Epub 2010 May 21. Review.


Proteomic identification of heterogeneous nuclear ribonucleoprotein L as a novel component of SLM/Sam68 Nuclear Bodies.

Rajan P, Dalgliesh C, Bourgeois CF, Heiner M, Emami K, Clark EL, Bindereif A, Stevenin J, Robson CN, Leung HY, Elliott DJ.

BMC Cell Biol. 2009 Nov 13;10:82. doi: 10.1186/1471-2121-10-82.


Feeding-elicited cataplexy in orexin knockout mice.

Clark EL, Baumann CR, Cano G, Scammell TE, Mochizuki T.

Neuroscience. 2009 Jul 21;161(4):970-7. doi: 10.1016/j.neuroscience.2009.04.007. Epub 2009 Apr 8.


High repetition rate pseudospark trigger generator.

Chatzakis J, Hassan SM, Clark EL, Petridis C, Lee P, Tatarakis M.

Rev Sci Instrum. 2008 Aug;79(8):086103. doi: 10.1063/1.2964224.


The RNA helicase p68 is a novel androgen receptor coactivator involved in splicing and is overexpressed in prostate cancer.

Clark EL, Coulson A, Dalgliesh C, Rajan P, Nicol SM, Fleming S, Heer R, Gaughan L, Leung HY, Elliott DJ, Fuller-Pace FV, Robson CN.

Cancer Res. 2008 Oct 1;68(19):7938-46. doi: 10.1158/0008-5472.CAN-08-0932.


Effect of relativistic plasma on extreme-ultraviolet harmonic emission from intense laser-matter interactions.

Krushelnick K, Rozmus W, Wagner U, Beg FN, Bochkarev SG, Clark EL, Dangor AE, Evans RG, Gopal A, Habara H, Mangles SP, Norreys PA, Robinson AP, Tatarakis M, Wei MS, Zepf M.

Phys Rev Lett. 2008 Mar 28;100(12):125005. Epub 2008 Mar 28.


Coupling transcription to RNA processing via the p68 DEAD box RNA helicase androgen receptor co-activator in prostate cancer.

Clark EL, Fuller-Pace FV, Elliott DJ, Robson CN.

Biochem Soc Trans. 2008 Jun;36(Pt 3):546-7. doi: 10.1042/BST0360546. Review.


Dynamic control of laser-produced proton beams.

Kar S, Markey K, Simpson PT, Bellei C, Green JS, Nagel SR, Kneip S, Carroll DC, Dromey B, Willingale L, Clark EL, McKenna P, Najmudin Z, Krushelnick K, Norreys P, Clarke RJ, Neely D, Borghesi M, Zepf M.

Phys Rev Lett. 2008 Mar 14;100(10):105004. Epub 2008 Mar 11.

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