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Items: 1 to 50 of 415

1.

Differentiation of Blastocystis and parasitic archamoebids encountered in untreated wastewater samples by amplicon-based next-generation sequencing.

Stensvold CR, Lebbad M, Hansen A, Beser J, Belkessa S, O'Brien Andersen L, Clark CG.

Parasite Epidemiol Control. 2019 Dec 21;9:e00131. doi: 10.1016/j.parepi.2019.e00131. eCollection 2020 May.

2.

Detection of Antimicrobial Resistance Using Proteomics and the Comprehensive Antibiotic Resistance Database: a Case Study.

Chen CY, Clark CG, Langner S, Boyd DA, Bharat A, McCorrister SJ, McArthur AG, Graham MR, Westmacott GR, Van Domselaar G.

Proteomics Clin Appl. 2019 Dec 24:e1800182. doi: 10.1002/prca.201800182. [Epub ahead of print]

PMID:
31872964
3.

Potent, Orally Bioavailable, and Efficacious Macrocyclic Inhibitors of Factor XIa. Discovery of Pyridine-Based Macrocycles Possessing Phenylazole Carboxamide P1 Groups.

Corte JR, Pinto DJP, Fang T, Osuna H, Yang W, Wang Y, Lai A, Clark CG, Sun JH, Rampulla R, Mathur A, Kaspady M, Neithnadka PR, Li YC, Rossi KA, Myers JE Jr, Sheriff S, Lou Z, Harper TW, Huang C, Zheng JJ, Bozarth JM, Wu Y, Wong PC, Crain EJ, Seiffert DA, Luettgen JM, Lam PYS, Wexler RR, Ewing WR.

J Med Chem. 2020 Jan 23;63(2):784-803. doi: 10.1021/acs.jmedchem.9b01768. Epub 2020 Jan 2.

PMID:
31833761
4.

Structure based design of macrocyclic factor XIa inhibitors: Discovery of cyclic P1 linker moieties with improved oral bioavailability.

Clark CG, Rossi KA, Corte JR, Fang T, Smallheer JM, De Lucca I, Nirschl DS, Orwat MJ, Pinto DJP, Hu Z, Wang Y, Yang W, Jeon Y, Ewing WR, Myers JE Jr, Sheriff S, Lou Z, Bozarth JM, Wu Y, Rendina A, Harper T, Zheng J, Xin B, Xiang Q, Luettgen JM, Seiffert DA, Wexler RR, Lam PYS.

Bioorg Med Chem Lett. 2019 Oct 1;29(19):126604. doi: 10.1016/j.bmcl.2019.08.008. Epub 2019 Aug 16.

PMID:
31445854
5.

Are molecular tools clarifying or confusing our understanding of the public health threat from zoonotic enteric protozoa in wildlife?

Robertson LJ, Clark CG, Debenham JJ, Dubey JP, Kváč M, Li J, Ponce-Gordo F, Ryan U, Schares G, Su C, Tsaousis AD.

Int J Parasitol Parasites Wildl. 2019 Feb 13;9:323-341. doi: 10.1016/j.ijppaw.2019.01.010. eCollection 2019 Aug. Review.

6.

Entamoeba chiangraiensis n. sp. (Amoebozoa: Entamoebidae) isolated from the gut of Asian swamp eel (Monopterus albus) in northern Thailand.

Jinatham V, Popluechai S, Clark CG, Gentekaki E.

Parasitology. 2019 Dec;146(14):1719-1724. doi: 10.1017/S0031182019000775. Epub 2019 Oct 23.

PMID:
31190659
7.

Genetic Diversity and Gene Family Expansions in Members of the Genus Entamoeba.

Wilson IW, Weedall GD, Lorenzi H, Howcroft T, Hon CC, Deloger M, Guillén N, Paterson S, Clark CG, Hall N.

Genome Biol Evol. 2019 Mar 1;11(3):688-705. doi: 10.1093/gbe/evz009.

8.

Novel Entamoeba Findings in Nonhuman Primates.

Elsheikha HM, Regan CS, Clark CG.

Trends Parasitol. 2018 Apr;34(4):283-294. doi: 10.1016/j.pt.2017.12.008. Epub 2018 Jan 24. Review.

9.

Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds.

Clark CG, Chen CY, Berry C, Walker M, McCorrister SJ, Chong PM, Westmacott GR.

PLoS One. 2018 Jan 2;13(1):e0190836. doi: 10.1371/journal.pone.0190836. eCollection 2018.

10.

Extreme genome diversity in the hyper-prevalent parasitic eukaryote Blastocystis.

Gentekaki E, Curtis BA, Stairs CW, Klimeš V, Eliáš M, Salas-Leiva DE, Herman EK, Eme L, Arias MC, Henrissat B, Hilliou F, Klute MJ, Suga H, Malik SB, Pightling AW, Kolisko M, Rachubinski RA, Schlacht A, Soanes DM, Tsaousis AD, Archibald JM, Ball SG, Dacks JB, Clark CG, van der Giezen M, Roger AJ.

PLoS Biol. 2017 Sep 11;15(9):e2003769. doi: 10.1371/journal.pbio.2003769. eCollection 2017 Sep.

11.

The EpiQuant Framework for Computing Epidemiological Concordance of Microbial Subtyping Data.

Hetman BM, Mutschall SK, Thomas JE, Gannon VPJ, Clark CG, Pollari F, Taboada EN.

J Clin Microbiol. 2017 May;55(5):1334-1349. doi: 10.1128/JCM.01945-16. Epub 2017 Feb 15.

12.

Genomic insights from whole genome sequencing of four clonal outbreak Campylobacter jejuni assessed within the global C. jejuni population.

Clark CG, Berry C, Walker M, Petkau A, Barker DO, Guan C, Reimer A, Taboada EN.

BMC Genomics. 2016 Dec 3;17(1):990.

13.

Molecular Identification and Subtype Analysis of Blastocystis.

Stensvold CR, Clark CG.

Curr Protoc Microbiol. 2016 Nov 18;43:20A.2.1-20A.2.10. doi: 10.1002/cpmc.17.

14.

Blastocystis: Isolation, Xenic Cultivation, and Cryopreservation.

Clark CG, Stensvold CR.

Curr Protoc Microbiol. 2016 Nov 18;43:20A.1.1-20A.1.8. doi: 10.1002/cpmc.18.

15.

Blastocystis Mitochondrial Genomes Appear to Show Multiple Independent Gains and Losses of Start and Stop Codons.

Jacob AS, Andersen LO, Bitar PP, Richards VP, Shah S, Stanhope MJ, Stensvold CR, Clark CG.

Genome Biol Evol. 2016 Dec 14;8(11):3340-3350.

16.

Current status of Blastocystis: A personal view.

Stensvold CR, Clark CG.

Parasitol Int. 2016 Dec;65(6 Pt B):763-771. doi: 10.1016/j.parint.2016.05.015. Epub 2016 May 28. Review.

17.

Mindfulness-based therapy and behavioral activation: A randomized controlled trial with depressed college students.

McIndoo CC, File AA, Preddy T, Clark CG, Hopko DR.

Behav Res Ther. 2016 Feb;77:118-28. doi: 10.1016/j.brat.2015.12.012. Epub 2015 Dec 23.

PMID:
26745622
18.

The distribution of Blastocystis subtypes in isolates from Qatar.

Abu-Madi M, Aly M, Behnke JM, Clark CG, Balkhy H.

Parasit Vectors. 2015 Sep 17;8:465. doi: 10.1186/s13071-015-1071-3.

19.

Pretreatment depression severity in breast cancer patients and its relation to treatment response to behavior therapy.

Hopko DR, Clark CG, Cannity K, Bell JL.

Health Psychol. 2016 Jan;35(1):10-8. doi: 10.1037/hea0000252. Epub 2015 Jul 20.

PMID:
26192386
20.

Expanding the Entamoeba Universe: New Hosts Yield Novel Ribosomal Lineages.

Jacob AS, Busby EJ, Levy AD, Komm N, Clark CG.

J Eukaryot Microbiol. 2016 Jan-Feb;63(1):69-78. doi: 10.1111/jeu.12249. Epub 2015 Jul 23.

21.

Endoplasmic reticulum and oxidant stress mediate nuclear factor-κB activation in the subfornical organ during angiotensin II hypertension.

Young CN, Li A, Dong FN, Horwath JA, Clark CG, Davisson RL.

Am J Physiol Cell Physiol. 2015 May 15;308(10):C803-12. doi: 10.1152/ajpcell.00223.2014. Epub 2015 Mar 11.

22.

Behavior therapy for depressed breast cancer patients: predictors of treatment outcome.

Hopko DR, Cannity K, McIndoo CC, File AA, Ryba MM, Clark CG, Bell JL.

J Consult Clin Psychol. 2015 Feb;83(1):225-31. doi: 10.1037/a0037704. Epub 2014 Aug 11.

PMID:
25111433
23.

4-Benzothiazole-7-hydroxyindolinyl diaryl ureas are potent P2Y1 antagonists with favorable pharmacokinetics: low clearance and small volume of distribution.

Qiao JX, Wang TC, Hiebert S, Hu CH, Schumacher WA, Spronk SA, Clark CG, Han Y, Hua J, Price LA, Shen H, Chacko SA, Everlof G, Bostwick JS, Steinbacher TE, Li YX, Huang CS, Seiffert DA, Rehfuss R, Wexler RR, Lam PY.

ChemMedChem. 2014 Oct;9(10):2327-43. doi: 10.1002/cmdc.201402141. Epub 2014 Jul 2.

PMID:
24989964
24.

DNA sequence heterogeneity of Campylobacter jejuni CJIE4 prophages and expression of prophage genes.

Clark CG, Chong PM, McCorrister SJ, Mabon P, Walker M, Westmacott GR.

PLoS One. 2014 Apr 22;9(4):e95349. doi: 10.1371/journal.pone.0095349. eCollection 2014.

25.

The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts.

Clark CG, Chong PM, McCorrister SJ, Simon P, Walker M, Lee DM, Nguy K, Cheng K, Gilmour MW, Westmacott GR.

BMC Microbiol. 2014 Mar 19;14:70. doi: 10.1186/1471-2180-14-70.

26.

Identification of 1-{2-[4-chloro-1'-(2,2-dimethylpropyl)-7-hydroxy-1,2-dihydrospiro[indole-3,4'-piperidine]-1-yl]phenyl}-3-{5-chloro-[1,3]thiazolo[5,4-b]pyridin-2-yl}urea, a potent, efficacious and orally bioavailable P2Y(1) antagonist as an antiplatelet agent.

Jeon YT, Yang W, Qiao JX, Li L, Ruel R, Thibeault C, Hiebert S, Wang TC, Wang Y, Liu Y, Clark CG, Wong HS, Zhu J, Wu DR, Sun D, Chen BC, Mathur A, Chacko SA, Malley M, Chen XQ, Shen H, Huang CS, Schumacher WA, Bostwick JS, Stewart AB, Price LA, Hua J, Li D, Levesque PC, Seiffert DA, Rehfuss R, Wexler RR, Lam PY.

Bioorg Med Chem Lett. 2014 Mar 1;24(5):1294-8. doi: 10.1016/j.bmcl.2014.01.066. Epub 2014 Jan 31.

PMID:
24513044
27.

Transmission of Dientamoeba fragilis: pinworm or cysts?

Clark CG, Röser D, Stensvold CR.

Trends Parasitol. 2014 Mar;30(3):136-40. doi: 10.1016/j.pt.2014.01.005. Epub 2014 Jan 31. Review.

28.

Phenotypic and genotypic characterization of Canadian clinical isolates of Vibrio parahaemolyticus collected from 2000 to 2009.

Banerjee SK, Kearney AK, Nadon CA, Peterson CL, Tyler K, Bakouche L, Clark CG, Hoang L, Gilmour MW, Farber JM.

J Clin Microbiol. 2014 Apr;52(4):1081-8. doi: 10.1128/JCM.03047-13. Epub 2014 Jan 22.

29.

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.

Horton NG, Wang K, Kobat D, Clark CG, Wise FW, Schaffer CB, Xu C.

Nat Photonics. 2013 Mar 1;7(3). doi: 10.1038/nphoton.2012.336.

30.

Current methods for molecular typing of Campylobacter species.

Taboada EN, Clark CG, Sproston EL, Carrillo CD.

J Microbiol Methods. 2013 Oct;95(1):24-31. doi: 10.1016/j.mimet.2013.07.007. Epub 2013 Jul 17. Review.

PMID:
23871858
31.

Evaluation of MALDI-TOF mass spectroscopy methods for determination of Escherichia coli pathotypes.

Clark CG, Kruczkiewicz P, Guan C, McCorrister SJ, Chong P, Wylie J, van Caeseele P, Tabor HA, Snarr P, Gilmour MW, Taboada EN, Westmacott GR.

J Microbiol Methods. 2013 Sep;94(3):180-91. doi: 10.1016/j.mimet.2013.06.020. Epub 2013 Jun 28.

PMID:
23816532
32.

Genomic distribution of SINEs in Entamoeba histolytica strains: implication for genotyping.

Kumari V, Iyer LR, Roy R, Bhargava V, Panda S, Paul J, Verweij JJ, Clark CG, Bhattacharya A, Bhattacharya S.

BMC Genomics. 2013 Jul 1;14:432. doi: 10.1186/1471-2164-14-432.

33.

Genetic diversity of blastocystis in livestock and zoo animals.

Alfellani MA, Taner-Mulla D, Jacob AS, Imeede CA, Yoshikawa H, Stensvold CR, Clark CG.

Protist. 2013 Jul;164(4):497-509. doi: 10.1016/j.protis.2013.05.003. Epub 2013 Jun 14.

34.

Limited intra-genetic diversity in Dientamoeba fragilis housekeeping genes.

Stensvold CR, Clark CG, Röser D.

Infect Genet Evol. 2013 Aug;18:284-6. doi: 10.1016/j.meegid.2013.05.003. Epub 2013 May 13.

35.

Be still my beating brain--reduction of brain micromotion during in vivo two-photon imaging.

Clark CG, Marchetti GJ, Young CN.

J Physiol. 2013 May 15;591(10):2379-80. doi: 10.1113/jphysiol.2013.253138. No abstract available.

36.

Discovery of diarylurea P2Y(1) antagonists with improved aqueous solubility.

Wang TC, Qiao JX, Clark CG, Jua J, Price LA, Wu Q, Chang M, Zheng J, Huang CS, Everlof G, Schumacher WA, Wong PC, Seiffert DA, Stewart AB, Bostwick JS, Crain EJ, Watson CA, Rehfuss R, Wexler RR, Lam PY.

Bioorg Med Chem Lett. 2013 Jun 1;23(11):3239-43. doi: 10.1016/j.bmcl.2013.03.125. Epub 2013 Apr 6.

PMID:
23602442
37.

Diversity and distribution of Blastocystis sp. subtypes in non-human primates.

Alfellani MA, Jacob AS, Perea NO, Krecek RC, Taner-Mulla D, Verweij JJ, Levecke B, Tannich E, Clark CG, Stensvold CR.

Parasitology. 2013 Jul;140(8):966-71. doi: 10.1017/S0031182013000255. Epub 2013 Apr 8.

38.

Recent developments in Blastocystis research.

Clark CG, van der Giezen M, Alfellani MA, Stensvold CR.

Adv Parasitol. 2013;82:1-32. doi: 10.1016/B978-0-12-407706-5.00001-0. Review.

39.

Variable geographic distribution of Blastocystis subtypes and its potential implications.

Alfellani MA, Stensvold CR, Vidal-Lapiedra A, Onuoha ES, Fagbenro-Beyioku AF, Clark CG.

Acta Trop. 2013 Apr;126(1):11-8. doi: 10.1016/j.actatropica.2012.12.011. Epub 2013 Jan 3.

40.

Effects of the Campylobacter jejuni CJIE1 prophage homologs on adherence and invasion in culture, patient symptoms, and source of infection.

Clark CG, Grant CC, Pollari F, Marshall B, Moses J, Tracz DM, Gilmour MW.

BMC Microbiol. 2012 Nov 20;12:269. doi: 10.1186/1471-2180-12-269.

41.

Dynamics and kinetics of structure formation in molecularly tethered fluorocarbon/hydrocarbon amphiphiles.

Elmahdy MM, Clark CG Jr, Butt HJ, Müllen K, Floudas G.

J Phys Chem B. 2012 Nov 26;116(46):13812-20. doi: 10.1021/jp309465z. Epub 2012 Nov 9.

PMID:
23121464
42.

Atomic force microscopy to characterize binding properties of α7-containing nicotinic acetylcholine receptors on neurokinin-1 receptor-expressing medullary respiratory neurons.

Clark CG, Sun Z, Meininger GA, Potts JT.

Exp Physiol. 2013 Feb;98(2):415-24. doi: 10.1113/expphysiol.2012.067660. Epub 2012 Sep 7.

43.

Entamoeba bangladeshi nov. sp., Bangladesh.

Royer TL, Gilchrist C, Kabir M, Arju T, Ralston KS, Haque R, Clark CG, Petri WA Jr.

Emerg Infect Dis. 2012 Sep;18(9):1543-5. doi: 10.3201/eid1809.120122. No abstract available.

44.

Genomic diversity of the human intestinal parasite Entamoeba histolytica.

Weedall GD, Clark CG, Koldkjaer P, Kay S, Bruchhaus I, Tannich E, Paterson S, Hall N.

Genome Biol. 2012 May 25;13(5):R38. doi: 10.1186/gb-2012-13-5-r38.

45.

Hypoxia activates nucleus tractus solitarii neurons projecting to the paraventricular nucleus of the hypothalamus.

King TL, Heesch CM, Clark CG, Kline DD, Hasser EM.

Am J Physiol Regul Integr Comp Physiol. 2012 May 15;302(10):R1219-32. doi: 10.1152/ajpregu.00028.2012. Epub 2012 Mar 7.

46.

Subtype analysis of Blastocystis isolates in Swedish patients.

Forsell J, Granlund M, Stensvold CR, Clark CG, Evengård B.

Eur J Clin Microbiol Infect Dis. 2012 Jul;31(7):1689-96. doi: 10.1007/s10096-011-1416-6. Epub 2012 Feb 15. Erratum in: Eur J Clin Microbiol Infect Dis. 2012 Jul;31(7):1697. Clark, G C [corrected to Clark, C G].

47.

Development and validation of a comparative genomic fingerprinting method for high-resolution genotyping of Campylobacter jejuni.

Taboada EN, Ross SL, Mutschall SK, Mackinnon JM, Roberts MJ, Buchanan CJ, Kruczkiewicz P, Jokinen CC, Thomas JE, Nash JH, Gannon VP, Marshall B, Pollari F, Clark CG.

J Clin Microbiol. 2012 Mar;50(3):788-97. doi: 10.1128/JCM.00669-11. Epub 2011 Dec 14.

48.

Comparison of molecular typing methods useful for detecting clusters of Campylobacter jejuni and C. coli isolates through routine surveillance.

Clark CG, Taboada E, Grant CC, Blakeston C, Pollari F, Marshall B, Rahn K, Mackinnon J, Daignault D, Pillai D, Ng LK.

J Clin Microbiol. 2012 Mar;50(3):798-809. doi: 10.1128/JCM.05733-11. Epub 2011 Dec 7.

49.

Short report: Molecular characterization of Blastocystis obtained from members of the indigenous Tapirapé ethnic group from the Brazilian Amazon region, Brazil.

Malheiros AF, Stensvold CR, Clark CG, Braga GB, Shaw JJ.

Am J Trop Med Hyg. 2011 Dec;85(6):1050-3. doi: 10.4269/ajtmh.2011.11-0481.

50.

Accelerometry-based physical activity and exercise capacity in pediatric kidney transplant patients.

Clark CG, Cantell M, Crawford S, Hamiwka LA.

Pediatr Nephrol. 2012 Apr;27(4):659-65. doi: 10.1007/s00467-011-2054-z. Epub 2011 Nov 25.

PMID:
22116577

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