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Items: 30

1.

The structure of a prokaryotic viral envelope protein expands the landscape of membrane fusion proteins.

El Omari K, Li S, Kotecha A, Walter TS, Bignon EA, Harlos K, Somerharju P, De Haas F, Clare DK, Molin M, Hurtado F, Li M, Grimes JM, Bamford DH, Tischler ND, Huiskonen JT, Stuart DI, Roine E.

Nat Commun. 2019 Feb 19;10(1):846. doi: 10.1038/s41467-019-08728-7.

2.

Using Scipion for stream image processing at Cryo-EM facilities.

Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, Del Cano L, Jiménez A, Martínez M, Melero R, Majtner T, Maluenda D, Mota J, Rancel Y, Ramírez-Aportela E, Vilas JL, Carroni M, Fleischmann S, Lindahl E, Ashton AW, Basham M, Clare DK, Savage K, Siebert CA, Sharov GG, Sorzano COS, Conesa P, Carazo JM.

J Struct Biol. 2018 Dec;204(3):457-463. doi: 10.1016/j.jsb.2018.10.001. Epub 2018 Oct 5.

3.

A two-domain folding intermediate of RuBisCO in complex with the GroEL chaperonin.

Natesh R, Clare DK, Farr GW, Horwich AL, Saibil HR.

Int J Biol Macromol. 2018 Oct 15;118(Pt A):671-675. doi: 10.1016/j.ijbiomac.2018.06.120. Epub 2018 Jun 27.

4.

Electron Bio-Imaging Centre (eBIC): the UK national research facility for biological electron microscopy.

Clare DK, Siebert CA, Hecksel C, Hagen C, Mordhorst V, Grange M, Ashton AW, Walsh MA, Grünewald K, Saibil HR, Stuart DI, Zhang P.

Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):488-495. doi: 10.1107/S2059798317007756. Epub 2017 May 31.

5.

Full-length, Oligomeric Structure of Wzz Determined by Cryoelectron Microscopy Reveals Insights into Membrane-Bound States.

Collins RF, Kargas V, Clarke BR, Siebert CA, Clare DK, Bond PJ, Whitfield C, Ford RC.

Structure. 2017 May 2;25(5):806-815.e3. doi: 10.1016/j.str.2017.03.017. Epub 2017 Apr 20.

6.

Structural Study of Heterogeneous Biological Samples by Cryoelectron Microscopy and Image Processing.

White HE, Ignatiou A, Clare DK, Orlova EV.

Biomed Res Int. 2017;2017:1032432. doi: 10.1155/2017/1032432. Epub 2017 Jan 15. Review.

7.

Ex vivo mammalian prions are formed of paired double helical prion protein fibrils.

Terry C, Wenborn A, Gros N, Sells J, Joiner S, Hosszu LL, Tattum MH, Panico S, Clare DK, Collinge J, Saibil HR, Wadsworth JD.

Open Biol. 2016 May;6(5). pii: 160035. doi: 10.1098/rsob.160035. Epub 2016 May 4.

8.

Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.

Joseph AP, Malhotra S, Burnley T, Wood C, Clare DK, Winn M, Topf M.

Methods. 2016 May 1;100:42-9. doi: 10.1016/j.ymeth.2016.03.007. Epub 2016 Mar 14.

9.

A spiral scaffold underlies cytoadherent knobs in Plasmodium falciparum-infected erythrocytes.

Watermeyer JM, Hale VL, Hackett F, Clare DK, Cutts EE, Vakonakis I, Fleck RA, Blackman MJ, Saibil HR.

Blood. 2016 Jan 21;127(3):343-51. doi: 10.1182/blood-2015-10-674002. Epub 2015 Dec 4.

10.

Novel Inter-Subunit Contacts in Barley Stripe Mosaic Virus Revealed by Cryo-Electron Microscopy.

Clare DK, Pechnikova EV, Skurat EV, Makarov VV, Sokolova OS, Solovyev AG, Orlova EV.

Structure. 2015 Oct 6;23(10):1815-1826. doi: 10.1016/j.str.2015.06.028. Epub 2015 Aug 13.

11.

In vivo examination of the cortical cytoskeleton in multiciliated cells using electron tomography.

Clare DK, Dumoux M, Delacour D.

Methods Cell Biol. 2015;129:61-82. doi: 10.1016/bs.mcb.2015.03.001. Epub 2015 May 27.

PMID:
26175434
12.

Basal foot MTOC organizes pillar MTs required for coordination of beating cilia.

Clare DK, Magescas J, Piolot T, Dumoux M, Vesque C, Pichard E, Dang T, Duvauchelle B, Poirier F, Delacour D.

Nat Commun. 2014 Sep 12;5:4888. doi: 10.1038/ncomms5888.

13.

Head-to-tail interactions of the coiled-coil domains regulate ClpB activity and cooperation with Hsp70 in protein disaggregation.

Carroni M, Kummer E, Oguchi Y, Wendler P, Clare DK, Sinning I, Kopp J, Mogk A, Bukau B, Saibil HR.

Elife. 2014 Apr 30;3:e02481. doi: 10.7554/eLife.02481.

14.

ATP-driven molecular chaperone machines.

Clare DK, Saibil HR.

Biopolymers. 2013 Nov;99(11):846-59. doi: 10.1002/bip.22361. Review.

15.

Atomic structure and hierarchical assembly of a cross-β amyloid fibril.

Fitzpatrick AW, Debelouchina GT, Bayro MJ, Clare DK, Caporini MA, Bajaj VS, Jaroniec CP, Wang L, Ladizhansky V, Müller SA, MacPhee CE, Waudby CA, Mott HR, De Simone A, Knowles TP, Saibil HR, Vendruscolo M, Orlova EV, Griffin RG, Dobson CM.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5468-73. doi: 10.1073/pnas.1219476110. Epub 2013 Mar 19.

16.

Structure and allostery of the chaperonin GroEL.

Saibil HR, Fenton WA, Clare DK, Horwich AL.

J Mol Biol. 2013 May 13;425(9):1476-87. doi: 10.1016/j.jmb.2012.11.028. Epub 2012 Nov 24. Review.

PMID:
23183375
17.

Chlamydiae assemble a pathogen synapse to hijack the host endoplasmic reticulum.

Dumoux M, Clare DK, Saibil HR, Hayward RD.

Traffic. 2012 Dec;13(12):1612-27. doi: 10.1111/tra.12002. Epub 2012 Sep 11.

18.

ATP-triggered conformational changes delineate substrate-binding and -folding mechanics of the GroEL chaperonin.

Clare DK, Vasishtan D, Stagg S, Quispe J, Farr GW, Topf M, Horwich AL, Saibil HR.

Cell. 2012 Mar 30;149(1):113-23. doi: 10.1016/j.cell.2012.02.047. Epub 2012 Mar 22.

19.

RNA channelling by the eukaryotic exosome.

Malet H, Topf M, Clare DK, Ebert J, Bonneau F, Basquin J, Drazkowska K, Tomecki R, Dziembowski A, Conti E, Saibil HR, Lorentzen E.

EMBO Rep. 2010 Dec;11(12):936-42. doi: 10.1038/embor.2010.164. Epub 2010 Nov 12.

20.

Template-free 13-protofilament microtubule-MAP assembly visualized at 8 A resolution.

Fourniol FJ, Sindelar CV, Amigues B, Clare DK, Thomas G, Perderiset M, Francis F, Houdusse A, Moores CA.

J Cell Biol. 2010 Nov 1;191(3):463-70. doi: 10.1083/jcb.201007081. Epub 2010 Oct 25.

21.

4.6A Cryo-EM reconstruction of tobacco mosaic virus from images recorded at 300 keV on a 4k x 4k CCD camera.

Clare DK, Orlova EV.

J Struct Biol. 2010 Sep;171(3):303-8. doi: 10.1016/j.jsb.2010.06.011. Epub 2010 Jun 15.

22.

Motor mechanism for protein threading through Hsp104.

Wendler P, Shorter J, Snead D, Plisson C, Clare DK, Lindquist S, Saibil HR.

Mol Cell. 2009 Apr 10;34(1):81-92. doi: 10.1016/j.molcel.2009.02.026.

23.

Chaperonin complex with a newly folded protein encapsulated in the folding chamber.

Clare DK, Bakkes PJ, van Heerikhuizen H, van der Vies SM, Saibil HR.

Nature. 2009 Jan 1;457(7225):107-10. doi: 10.1038/nature07479.

24.

Multiple states of a nucleotide-bound group 2 chaperonin.

Clare DK, Stagg S, Quispe J, Farr GW, Horwich AL, Saibil HR.

Structure. 2008 Apr;16(4):528-34. doi: 10.1016/j.str.2008.01.016.

25.

Detection and separation of heterogeneity in molecular complexes by statistical analysis of their two-dimensional projections.

Elad N, Clare DK, Saibil HR, Orlova EV.

J Struct Biol. 2008 Apr;162(1):108-20. doi: 10.1016/j.jsb.2007.11.007. Epub 2007 Nov 22.

PMID:
18166488
26.

Topologies of a substrate protein bound to the chaperonin GroEL.

Elad N, Farr GW, Clare DK, Orlova EV, Horwich AL, Saibil HR.

Mol Cell. 2007 May 11;26(3):415-26.

27.

An expanded and flexible form of the vacuolar ATPase membrane sector.

Clare DK, Orlova EV, Finbow MA, Harrison MA, Findlay JB, Saibil HR.

Structure. 2006 Jul;14(7):1149-56.

28.

An expanded protein folding cage in the GroEL-gp31 complex.

Clare DK, Bakkes PJ, van Heerikhuizen H, van der Vies SM, Saibil HR.

J Mol Biol. 2006 May 5;358(3):905-11. Epub 2006 Mar 6.

PMID:
16549073
29.

Allosteric signaling of ATP hydrolysis in GroEL-GroES complexes.

Ranson NA, Clare DK, Farr GW, Houldershaw D, Horwich AL, Saibil HR.

Nat Struct Mol Biol. 2006 Feb;13(2):147-52. Epub 2006 Jan 22.

30.

Folding with and without encapsulation by cis- and trans-only GroEL-GroES complexes.

Farr GW, Fenton WA, Chaudhuri TK, Clare DK, Saibil HR, Horwich AL.

EMBO J. 2003 Jul 1;22(13):3220-30.

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