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Items: 1 to 50 of 334


A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS).

Jing X, Emerson M, Masters D, Brooks M, Buskirk J, Abukamail N, Liu C, Cimino JJ, Shubrook J, De Lacalle S, Zhou Y, Patel VL.

BMC Med Inform Decis Mak. 2019 Feb 14;19(1):31. doi: 10.1186/s12911-019-0750-y.


Clinicians' reasoning as reflected in electronic clinical note-entry and reading/retrieval: a systematic review and qualitative synthesis.

Colicchio TK, Cimino JJ.

J Am Med Inform Assoc. 2019 Feb 1;26(2):172-184. doi: 10.1093/jamia/ocy155.


Palliative Care Clinician Overestimation of Survival in Advanced Cancer: Disparities and Association With End-of-Life Care.

Gramling R, Gajary-Coots E, Cimino J, Fiscella K, Epstein R, Ladwig S, Anderson W, Alexander SC, Han PK, Gramling D, Norton SA.

J Pain Symptom Manage. 2019 Feb;57(2):233-240. doi: 10.1016/j.jpainsymman.2018.10.510. Epub 2018 Nov 1.


Classifying Clinical Trial Eligibility Criteria to Facilitate Phased Cohort Identification Using Clinical Data Repositories.

Wang AY, Lancaster WJ, Wyatt MC, Rasmussen LV, Fort DG, Cimino JJ.

AMIA Annu Symp Proc. 2018 Apr 16;2017:1754-1763. eCollection 2017.


A survey of practices for the use of electronic health records to support research recruitment.

Obeid JS, Beskow LM, Rape M, Gouripeddi R, Black RA, Cimino JJ, Embi PJ, Weng C, Marnocha R, Buse JB.

J Clin Transl Sci. 2017 Aug;1(4):246-252. doi: 10.1017/cts.2017.301.


Phosphoinositide 3-Kinase Gamma Inhibition Protects From Anthracycline Cardiotoxicity and Reduces Tumor Growth.

Li M, Sala V, De Santis MC, Cimino J, Cappello P, Pianca N, Di Bona A, Margaria JP, Martini M, Lazzarini E, Pirozzi F, Rossi L, Franco I, Bornbaum J, Heger J, Rohrbach S, Perino A, Tocchetti CG, Lima BHF, Teixeira MM, Porporato PE, Schulz R, Angelini A, Sandri M, Ameri P, Sciarretta S, Lima-Júnior RCP, Mongillo M, Zaglia T, Morello F, Novelli F, Hirsch E, Ghigo A.

Circulation. 2018 Aug 14;138(7):696-711. doi: 10.1161/CIRCULATIONAHA.117.030352.


In Vivo Multiscale and Spatially-Dependent Biomechanics Reveals Differential Strain Transfer Hierarchy in Skeletal Muscle.

Ghosh S, Cimino JG, Scott AK, Damen FW, Phillips EH, Veress AI, Neu CP, Goergen CJ.

ACS Biomater Sci Eng. 2017 Nov 13;3(11):2798-2805. doi: 10.1021/acsbiomaterials.6b00772. Epub 2017 Feb 17.


Clinical Informatics Researcher's Desiderata for the Data Content of the Next Generation Electronic Health Record.

Kennell TI Jr, Willig JH, Cimino JJ.

Appl Clin Inform. 2017 Oct;8(4):1159-1172. doi: 10.4338/ACI-2017-06-R-0101. Epub 2017 Dec 21.


Associations of Physician Empathy with Patient Anxiety and Ratings of Communication in Hospital Admission Encounters.

Weiss R, Vittinghoff E, Fang MC, Cimino JEW, Chasteen KA, Arnold RM, Auerbach AD, Anderson WG.

J Hosp Med. 2017 Oct;12(10):805-810. doi: 10.12788/jhm.2828. Epub 2017 Sep 6.


Palliative Care Professional Development for Critical Care Nurses: A Multicenter Program.

Anderson WG, Puntillo K, Cimino J, Noort J, Pearson D, Boyle D, Grywalski M, Meyer J, O'Neil-Page E, Cain J, Herman H, Barbour S, Turner K, Moore E, Liao S, Ferrell B, Mitchell W, Edmonds K, Fairman N, Joseph D, MacMillan J, Milic MM, Miller M, Nakagawa L, O'Riordan DL, Pietras C, Thornberry K, Pantilat SZ.

Am J Crit Care. 2017 Sep;26(5):361-371. doi: 10.4037/ajcc2017336.


Data demonstrating the anti-oxidant role of hemopexin in the heart.

Ingoglia G, Sag CM, Rex N, De Franceschi L, Vinchi F, Cimino J, Petrillo S, Wagner S, Kreitmeier K, Silengo L, Altruda F, Maier LS, Hirsch E, Ghigo A, Tolosano E.

Data Brief. 2017 May 13;13:69-76. doi: 10.1016/j.dib.2017.05.026. eCollection 2017 Aug.


The UAB Informatics Institute and 2016 CEGS N-GRID de-identification shared task challenge.

Bui DDA, Wyatt M, Cimino JJ.

J Biomed Inform. 2017 Nov;75S:S54-S61. doi: 10.1016/j.jbi.2017.05.001. Epub 2017 May 3.


Metabolic inhibitors accentuate the anti-tumoral effect of HDAC5 inhibition.

Hendrick E, Peixoto P, Blomme A, Polese C, Matheus N, Cimino J, Frère A, Mouithys-Mickalad A, Serteyn D, Bettendorff L, Elmoualij B, De Tullio P, Eppe G, Dequiedt F, Castronovo V, Mottet D.

Oncogene. 2017 Aug 24;36(34):4859-4874. doi: 10.1038/onc.2017.103. Epub 2017 Apr 17.


Hemopexin counteracts systolic dysfunction induced by heme-driven oxidative stress.

Ingoglia G, Sag CM, Rex N, De Franceschi L, Vinchi F, Cimino J, Petrillo S, Wagner S, Kreitmeier K, Silengo L, Altruda F, Maier LS, Hirsch E, Ghigo A, Tolosano E.

Free Radic Biol Med. 2017 Jul;108:452-464. doi: 10.1016/j.freeradbiomed.2017.04.003. Epub 2017 Apr 8.


A Learning Health Care System Using Computer-Aided Diagnosis.

Cahan A, Cimino JJ.

J Med Internet Res. 2017 Mar 8;19(3):e54. doi: 10.2196/jmir.6663. Review.


i3b3: Infobuttons for i2b2 as a Mechanism for Investigating the Information Needs of Clinical Researchers.

Kennell T Jr, Dempsey DM, Cimino JJ.

AMIA Annu Symp Proc. 2017 Feb 10;2016:696-704. eCollection 2016.


Computer-aided assessment of the generalizability of clinical trial results.

Cahan A, Cahan S, Cimino JJ.

Int J Med Inform. 2017 Mar;99:60-66. doi: 10.1016/j.ijmedinf.2016.12.008. Epub 2017 Jan 6.


User-centered design of multi-gene sequencing panel reports for clinicians.

Cutting E, Banchero M, Beitelshees AL, Cimino JJ, Fiol GD, Gurses AP, Hoffman MA, Jeng LJ, Kawamoto K, Kelemen M, Pincus HA, Shuldiner AR, Williams MS, Pollin TI, Overby CL.

J Biomed Inform. 2016 Oct;63:1-10. doi: 10.1016/j.jbi.2016.07.014. Epub 2016 Jul 14.


Improving precision medicine using individual patient data from trials.

Cahan A, Cimino JJ.

CMAJ. 2017 Feb 6;189(5):E204-E207. doi: 10.1503/cmaj.160267. Epub 2016 Aug 29. Review. No abstract available.


Context-sensitive decision support (infobuttons) in electronic health records: a systematic review.

Cook DA, Teixeira MT, Heale BS, Cimino JJ, Del Fiol G.

J Am Med Inform Assoc. 2017 Mar 1;24(2):460-468. doi: 10.1093/jamia/ocw104. Review.


Visual assessment of the similarity between a patient and trial population: Is This Clinical Trial Applicable to My Patient?

Cahan A, Cimino JJ.

Appl Clin Inform. 2016 Jun 8;7(2):477-88. doi: 10.4338/ACI-2015-12-RA-0178. eCollection 2016.


A multi-site cognitive task analysis for biomedical query mediation.

Hruby GW, Rasmussen LV, Hanauer D, Patel VL, Cimino JJ, Weng C.

Int J Med Inform. 2016 Sep;93:74-84. doi: 10.1016/j.ijmedinf.2016.06.006. Epub 2016 Jun 16.


A New Transgenic Mouse Model of Heart Failure and Cardiac Cachexia Raised by Sustained Activation of Met Tyrosine Kinase in the Heart.

Sala V, Gatti S, Gallo S, Medico E, Cantarella D, Cimino J, Ponzetto A, Crepaldi T.

Biomed Res Int. 2016;2016:9549036. doi: 10.1155/2016/9549036. Epub 2016 May 19.


Facilitating biomedical researchers' interrogation of electronic health record data: Ideas from outside of biomedical informatics.

Hruby GW, Matsoukas K, Cimino JJ, Weng C.

J Biomed Inform. 2016 Apr;60:376-84. doi: 10.1016/j.jbi.2016.03.004. Epub 2016 Mar 10. Review.


Cardiac concentric hypertrophy promoted by activated Met receptor is mitigated in vivo by inhibition of Erk1,2 signalling with Pimasertib.

Sala V, Gallo S, Gatti S, Medico E, Vigna E, Cantarella D, Fontani L, Natale M, Cimino J, Morello M, Comoglio PM, Ponzetto A, Crepaldi T.

J Mol Cell Cardiol. 2016 Apr;93:84-97. doi: 10.1016/j.yjmcc.2016.02.017. Epub 2016 Feb 26.


Impending Challenges for the Use of Big Data.

Huser V, Cimino JJ.

Int J Radiat Oncol Biol Phys. 2016 Jul 1;95(3):890-894. doi: 10.1016/j.ijrobp.2015.10.060. Epub 2015 Nov 5. No abstract available.


DREAM: Classification scheme for dialog acts in clinical research query mediation.

Hoxha J, Chandar P, He Z, Cimino J, Hanauer D, Weng C.

J Biomed Inform. 2016 Feb;59:89-101. doi: 10.1016/j.jbi.2015.11.011. Epub 2015 Nov 30.


ICU Bedside Nurses' Involvement in Palliative Care Communication: A Multicenter Survey.

Anderson WG, Puntillo K, Boyle D, Barbour S, Turner K, Cimino J, Moore E, Noort J, MacMillan J, Pearson D, Grywalski M, Liao S, Ferrell B, Meyer J, O'Neil-Page E, Cain J, Herman H, Mitchell W, Pantilat S.

J Pain Symptom Manage. 2016 Mar;51(3):589-596.e2. doi: 10.1016/j.jpainsymman.2015.11.003. Epub 2015 Nov 18.


Feeling Heard and Understood: A Patient-Reported Quality Measure for the Inpatient Palliative Care Setting.

Gramling R, Stanek S, Ladwig S, Gajary-Coots E, Cimino J, Anderson W, Norton SA; AAHPM Research Committee Writing Group, Aslakson RA, Ast K, Elk R, Garner KK, Gramling R, Grudzen C, Kamal AH, Lamba S, LeBlanc TW, Rhodes RL, Roeland E, Schulman-Green D, Unroe KT.

J Pain Symptom Manage. 2016 Feb;51(2):150-4. doi: 10.1016/j.jpainsymman.2015.10.018. Epub 2015 Nov 17.


Design of, and enrollment in, the palliative care communication research initiative: a direct-observation cohort study.

Gramling R, Gajary-Coots E, Stanek S, Dougoud N, Pyke H, Thomas M, Cimino J, Sanders M, Alexander SC, Epstein R, Fiscella K, Gramling D, Ladwig S, Anderson W, Pantilat S, Norton SA.

BMC Palliat Care. 2015 Aug 19;14:40. doi: 10.1186/s12904-015-0037-8.


Point-of-Care Knowledge-Based Resource Needs of Clinicians: A Survey from a Large Academic Medical Center.

Ellsworth MA, Homan JM, Cimino JJ, Peters SG, Pickering BW, Herasevich V.

Appl Clin Inform. 2015 May 6;6(2):305-17. doi: 10.4338/ACI-2014-11-RA-0104. eCollection 2015.


Communicating with Patients' Families and Physicians About Prognosis and Goals of Care.

Milic MM, Puntillo K, Turner K, Joseph D, Peters N, Ryan R, Schuster C, Winfree H, Cimino J, Anderson WG.

Am J Crit Care. 2015 Jul;24(4):e56-64. doi: 10.4037/ajcc2015855.


Dietary ω-3 fatty acids protect against vasculopathy in a transgenic mouse model of sickle cell disease.

Kalish BT, Matte A, Andolfo I, Iolascon A, Weinberg O, Ghigo A, Cimino J, Siciliano A, Hirsch E, Federti E, Puder M, Brugnara C, De Franceschi L.

Haematologica. 2015 Jul;100(7):870-80. doi: 10.3324/haematol.2015.124586. Epub 2015 May 1.


Identifying the Clinical Laboratory Tests from Unspecified "Other Lab Test" Data for Secondary Use.

Pan X, Cimino JJ.

AMIA Annu Symp Proc. 2015 Nov 5;2015:1018-23. eCollection 2015.


Reproducing a Prospective Clinical Study as a Computational Retrospective Study in MIMIC-II.

Kury FS, Huser V, Cimino JJ.

AMIA Annu Symp Proc. 2015 Nov 5;2015:804-13. eCollection 2015.


A multicenter study of key stakeholders' perspectives on communicating with surrogates about prognosis in intensive care units.

Anderson WG, Cimino JW, Ernecoff NC, Ungar A, Shotsberger KJ, Pollice LA, Buddadhumaruk P, Carson SS, Curtis JR, Hough CL, Lo B, Matthay MA, Peterson MW, Steingrub JS, White DB.

Ann Am Thorac Soc. 2015 Feb;12(2):142-52. doi: 10.1513/AnnalsATS.201407-325OC.


Reply to "Tn4401 carrying blaKPC is inserted within another insertion in pKpQIL and related plasmids".

Lau AF, Wang H, Weingarten RA, Drake SK, Suffredini AF, Chen Y, Gucek M, Youn JH, Stock F, Tso H, DeLeo J, Cimino JJ, Frank KM, Dekker JP.

J Clin Microbiol. 2014 Dec;52(12):4450. doi: 10.1128/JCM.02614-14. No abstract available.


EGFR activation and signaling in cancer cells are enhanced by the membrane-bound metalloprotease MT4-MMP.

Paye A, Truong A, Yip C, Cimino J, Blacher S, Munaut C, Cataldo D, Foidart JM, Maquoi E, Collignon J, Delvenne P, Jerusalem G, Noel A, Sounni NE.

Cancer Res. 2014 Dec 1;74(23):6758-70. doi: 10.1158/0008-5472.CAN-13-2994. Epub 2014 Oct 15.


Developing genomic knowledge bases and databases to support clinical management: current perspectives.

Huser V, Sincan M, Cimino JJ.

Pharmgenomics Pers Med. 2014 Sep 9;7:275-83. doi: 10.2147/PGPM.S49904. eCollection 2014. Review.


Blocking lipid synthesis overcomes tumor regrowth and metastasis after antiangiogenic therapy withdrawal.

Sounni NE, Cimino J, Blacher S, Primac I, Truong A, Mazzucchelli G, Paye A, Calligaris D, Debois D, De Tullio P, Mari B, De Pauw E, Noel A.

Cell Metab. 2014 Aug 5;20(2):280-94. doi: 10.1016/j.cmet.2014.05.022. Epub 2014 Jul 10.


A rapid matrix-assisted laser desorption ionization-time of flight mass spectrometry-based method for single-plasmid tracking in an outbreak of carbapenem-resistant Enterobacteriaceae.

Lau AF, Wang H, Weingarten RA, Drake SK, Suffredini AF, Garfield MK, Chen Y, Gucek M, Youn JH, Stock F, Tso H, DeLeo J, Cimino JJ, Frank KM, Dekker JP.

J Clin Microbiol. 2014 Aug;52(8):2804-12. doi: 10.1128/JCM.00694-14. Epub 2014 May 21.


A complementary graphical method for reducing and analyzing large data sets. Case studies demonstrating thresholds setting and selection.

Jing X, Cimino JJ.

Methods Inf Med. 2014;53(3):173-85. doi: 10.3414/ME13-01-0075. Epub 2014 Apr 14.


Consumer-mediated health information exchanges: the 2012 ACMI debate.

Cimino JJ, Frisse ME, Halamka J, Sweeney L, Yasnoff W.

J Biomed Inform. 2014 Apr;48:5-15. doi: 10.1016/j.jbi.2014.02.009. Epub 2014 Feb 20.

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