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Items: 1 to 50 of 185

1.

"Gate Effect" in p-Synephrine Electrochemical Sensing with a Molecularly Imprinted Polymer and Redox Probes.

Lach P, Cieplak M, Majewska M, Noworyta KR, Sharma PS, Kutner W.

Anal Chem. 2019 Jun 5. doi: 10.1021/acs.analchem.8b05512. [Epub ahead of print]

PMID:
31124353
2.

Differentiating between Inactive and Active States of Rhodopsin by Atomic Force Microscopy in Native Membranes.

Senapati S, Poma AB, Cieplak M, Filipek S, Park PSH.

Anal Chem. 2019 Jun 4;91(11):7226-7235. doi: 10.1021/acs.analchem.9b00546. Epub 2019 May 16.

PMID:
31074606
3.

Selective PQQPFPQQ Gluten Epitope Chemical Sensor with a Molecularly Imprinted Polymer Recognition Unit and an Extended-Gate Field-Effect Transistor Transduction Unit.

Iskierko Z, Sharma PS, Noworyta KR, Borowicz P, Cieplak M, Kutner W, Bossi AM.

Anal Chem. 2019 Apr 2;91(7):4537-4543. doi: 10.1021/acs.analchem.8b05557. Epub 2019 Mar 14.

PMID:
30848126
4.

Facile Fabrication of Surface-Imprinted Macroporous Films for Chemosensing of Human Chorionic Gonadotropin Hormone.

Dąbrowski M, Zimińska A, Kalecki J, Cieplak M, Lisowski W, Maksym R, Shao S, D'Souza F, Kuhn A, Sharma PS.

ACS Appl Mater Interfaces. 2019 Mar 6;11(9):9265-9276. doi: 10.1021/acsami.8b17951. Epub 2019 Feb 20.

PMID:
30714713
5.

Steered molecular dynamics simulations reveal the role of Ca2+ in regulating mechanostability of cellulose-binding proteins.

Gunnoo M, Cazade PA, Orlowski A, Chwastyk M, Liu H, Ta DT, Cieplak M, Nash M, Thompson D.

Phys Chem Chem Phys. 2018 Sep 12;20(35):22674-22680. doi: 10.1039/c8cp00925b.

PMID:
30132772
6.

Disordered peptide chains in an α-C-based coarse-grained model.

Mioduszewski Ł, Cieplak M.

Phys Chem Chem Phys. 2018 Jul 18;20(28):19057-19070. doi: 10.1039/c8cp03309a.

PMID:
29972174
7.

Special Issue on the Physics of Viral Capsids.

Cieplak M, Roos WH.

J Phys Condens Matter. 2018 Jul 25;30(29):290201. doi: 10.1088/1361-648X/aacb6c. Epub 2018 Jun 8. No abstract available.

PMID:
29882747
8.

Stability of structurally entangled protein dimers.

Zhao Y, Cieplak M.

Proteins. 2018 Sep;86(9):945-955. doi: 10.1002/prot.25526. Epub 2018 Aug 25.

PMID:
29790597
9.

Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module.

Wojciechowski M, Różycki B, Huy PDQ, Li MS, Bayer EA, Cieplak M.

Sci Rep. 2018 Mar 22;8(1):5051. doi: 10.1038/s41598-018-23380-9.

10.

Structural entanglements in protein complexes.

Zhao Y, Chwastyk M, Cieplak M.

J Chem Phys. 2017 Jun 14;146(22):225102. doi: 10.1063/1.4985221.

PMID:
29166058
11.

Maraba virus-vectored cancer vaccines represent a safe and novel therapeutic option for cats.

Hummel J, Bienzle D, Morrison A, Cieplak M, Stephenson K, DeLay J, Woods JP, Lichty BD, Bridle BW.

Sci Rep. 2017 Nov 16;7(1):15738. doi: 10.1038/s41598-017-15992-4.

12.

Nanostructured molecularly imprinted polymers for protein chemosensing.

Dabrowski M, Lach P, Cieplak M, Kutner W.

Biosens Bioelectron. 2018 Apr 15;102:17-26. doi: 10.1016/j.bios.2017.10.045. Epub 2017 Oct 23. Review.

PMID:
29101784
13.

Self-assembly of model proteins into virus capsids.

Wołek K, Cieplak M.

J Phys Condens Matter. 2017 Nov 29;29(47):474003. doi: 10.1088/1361-648X/aa9351.

PMID:
29027904
14.

Elastic moduli of biological fibers in a coarse-grained model: crystalline cellulose and β-amyloids.

Poma AB, Chwastyk M, Cieplak M.

Phys Chem Chem Phys. 2017 Oct 25;19(41):28195-28206. doi: 10.1039/c7cp05269c.

PMID:
29022971
15.

Synthesis and application of a "plastic antibody" in electrochemical microfluidic platform for oxytocin determination.

Sharma PS, Iskierko Z, Noworyta K, Cieplak M, Borowicz P, Lisowski W, D'Souza F, Kutner W.

Biosens Bioelectron. 2018 Feb 15;100:251-258. doi: 10.1016/j.bios.2017.09.009. Epub 2017 Sep 9.

PMID:
28934696
16.

Non-local effects of point mutations on the stability of a protein module.

Chwastyk M, Vera AM, Galera-Prat A, Gunnoo M, Thompson D, Carrión-Vázquez M, Cieplak M.

J Chem Phys. 2017 Sep 14;147(10):105101. doi: 10.1063/1.4999703.

PMID:
28915745
17.

Proteins at air-water and oil-water interfaces in an all-atom model.

Zhao Y, Cieplak M.

Phys Chem Chem Phys. 2017 Sep 20;19(36):25197-25206. doi: 10.1039/c7cp03829a.

PMID:
28884762
18.

The length but not the sequence of peptide linker modules exerts the primary influence on the conformations of protein domains in cellulosome multi-enzyme complexes.

Różycki B, Cazade PA, O'Mahony S, Thompson D, Cieplak M.

Phys Chem Chem Phys. 2017 Aug 16;19(32):21414-21425. doi: 10.1039/c7cp04114d.

PMID:
28758665
19.

Echocardiographic Assessment in Patients with Granulomatosis with Polyangiitis.

Życińska K, Borowiec A, Zielonka TM, Rusinowicz T, Hadzik-Błaszczyk M, Cieplak M, Wardyn KA.

Adv Exp Med Biol. 2017;1022:27-33. doi: 10.1007/5584_2017_43.

PMID:
28573446
20.

Structural Changes in Barley Protein LTP1 Isoforms at Air-Water Interfaces.

Zhao Y, Cieplak M.

Langmuir. 2017 May 16;33(19):4769-4780. doi: 10.1021/acs.langmuir.7b00791. Epub 2017 May 5.

PMID:
28457129
21.

Hierarchical templating in deposition of semi-covalently imprinted inverse opal polythiophene film for femtomolar determination of human serum albumin.

Dabrowski M, Cieplak M, Sharma PS, Borowicz P, Noworyta K, Lisowski W, D'Souza F, Kuhn A, Kutner W.

Biosens Bioelectron. 2017 Aug 15;94:155-161. doi: 10.1016/j.bios.2017.02.046. Epub 2017 Mar 1.

PMID:
28284074
22.

Polymer membrane ion-selective electrodes as a convenient tool for lipases and esterases assays.

Cieplak M, Ostaszewski R.

Prep Biochem Biotechnol. 2017 Aug 9;47(7):673-677. doi: 10.1080/10826068.2017.1303611. Epub 2017 Mar 9.

PMID:
28277945
23.

Combining the MARTINI and Structure-Based Coarse-Grained Approaches for the Molecular Dynamics Studies of Conformational Transitions in Proteins.

Poma AB, Cieplak M, Theodorakis PE.

J Chem Theory Comput. 2017 Mar 14;13(3):1366-1374. doi: 10.1021/acs.jctc.6b00986. Epub 2017 Feb 24.

24.

Molecularly Imprinted Polymer Chemosensor for Selective Determination of an N-Nitroso-l-proline Food Toxin.

Lach P, Sharma PS, Golebiewska K, Cieplak M, D'Souza F, Kutner W.

Chemistry. 2017 Feb 3;23(8):1942-1949. doi: 10.1002/chem.201604799. Epub 2017 Jan 6.

PMID:
28060413
25.

Topological transformations in proteins: effects of heating and proximity of an interface.

Zhao Y, Chwastyk M, Cieplak M.

Sci Rep. 2017 Jan 4;7:39851. doi: 10.1038/srep39851.

26.

Whooping Cough in Adults: A Series of Severe Cases.

Zycinska K, Cieplak M, Chmielewska M, Nitsch-Osuch A, Klaczkow A, Hadzik-Blaszczyk M, Kur Z, Wardyn KA.

Adv Exp Med Biol. 2017;955:47-50. doi: 10.1007/5584_2016_167.

PMID:
28039663
27.

Antibiotic Treatment of Hospitalized Patients with Pneumonia Complicated by Clostridium Difficile Infection.

Zycinska K, Chmielewska M, Lenartowicz B, Hadzik-Blaszczyk M, Cieplak M, Kur Z, Krupa R, Wardyn KA.

Adv Exp Med Biol. 2016 Dec 14. [Epub ahead of print]

PMID:
27966110
28.

Clostridium Difficile Infection Due to Pneumonia Treatment: Mortality Risk Models.

Chmielewska M, Zycinska K, Lenartowicz B, Hadzik-Błaszczyk M, Cieplak M, Kur Z, Wardyn KA.

Adv Exp Med Biol. 2017;955:59-63. doi: 10.1007/5584_2016_160.

PMID:
27815923
29.

Antibiotic Treatment of Hospitalized Patients with Pneumonia Complicated by Clostridium Difficile Infection.

Zycinska K, Chmielewska M, Lenartowicz B, Hadzik-Blaszczyk M, Cieplak M, Kur Z, Krupa R, Wardyn KA.

Adv Exp Med Biol. 2016;952:59-64.

PMID:
27620311
30.

Dual binding mode in cohesin-dockerin complexes as assessed through stretching studies.

Wojciechowski M, Cieplak M.

J Chem Phys. 2016 Oct 7;145(13):134102.

PMID:
27782410
31.

Structural fluctuations and thermal stability of proteins in crowded environments: effects of the excluded volume.

Starzyk A, Wojciechowski M, Cieplak M.

Phys Biol. 2016 Oct 25;13(6):066002.

PMID:
27779115
32.

Artificial Biosensors: How Can Molecular Imprinting Mimic Biorecognition?

Cieplak M, Kutner W.

Trends Biotechnol. 2016 Nov;34(11):922-941. doi: 10.1016/j.tibtech.2016.05.011. Epub 2016 Jun 9. Review.

PMID:
27289133
33.
34.

Unfolding knots by proteasome-like systems: simulations of the behaviour of folded and neurotoxic proteins.

Wojciechowski M, Gómez-Sicilia À, Carrión-Vázquez M, Cieplak M.

Mol Biosyst. 2016 Aug 16;12(9):2700-12. doi: 10.1039/c6mb00214e.

PMID:
27425826
35.

The volume of cavities in proteins and virus capsids.

Chwastyk M, Jaskolski M, Cieplak M.

Proteins. 2016 Sep;84(9):1275-86. doi: 10.1002/prot.25076. Epub 2016 Jun 15.

PMID:
27231838
36.

Criteria for folding in structure-based models of proteins.

Wołek K, Cieplak M.

J Chem Phys. 2016 May 14;144(18):185102. doi: 10.1063/1.4948783.

PMID:
27179507
37.

Early diagnosis of fungal infections using piezomicrogravimetric and electric chemosensors based on polymers molecularly imprinted with d-arabitol.

Dabrowski M, Sharma PS, Iskierko Z, Noworyta K, Cieplak M, Lisowski W, Oborska S, Kuhn A, Kutner W.

Biosens Bioelectron. 2016 May 15;79:627-35. doi: 10.1016/j.bios.2015.12.088. Epub 2015 Dec 24.

PMID:
26761618
38.

Nanoscale Engineering of Designer Cellulosomes.

Gunnoo M, Cazade PA, Galera-Prat A, Nash MA, Czjzek M, Cieplak M, Alvarez B, Aguilar M, Karpol A, Gaub H, Carrión-Vázquez M, Bayer EA, Thompson D.

Adv Mater. 2016 Jul;28(27):5619-47. doi: 10.1002/adma.201503948. Epub 2016 Jan 7.

PMID:
26748482
39.

Determination of contact maps in proteins: A combination of structural and chemical approaches.

Wołek K, Gómez-Sicilia À, Cieplak M.

J Chem Phys. 2015 Dec 28;143(24):243105. doi: 10.1063/1.4929599.

PMID:
26723590
40.

Lund-Mackay System for Computed Tomography Evaluation of Paranasal Sinuses in Patients with Granulomatosis and Polyangiitis.

Zycinska K, Straburzynski M, Nitsch-Osuch A, Krupa R, Hadzik-Błaszczyk M, Cieplak M, Zielonka TM, Wardyn K.

Adv Exp Med Biol. 2016;884:13-9.

PMID:
26542595
41.

An Exploration of the Universe of Polyglutamine Structures.

Gómez-Sicilia À, Sikora M, Cieplak M, Carrión-Vázquez M.

PLoS Comput Biol. 2015 Oct 23;11(10):e1004541. doi: 10.1371/journal.pcbi.1004541. eCollection 2015 Oct.

42.

Cotranslational folding of deeply knotted proteins.

Chwastyk M, Cieplak M.

J Phys Condens Matter. 2015 Sep 9;27(35):354105. doi: 10.1088/0953-8984/27/35/354105. Epub 2015 Aug 20.

PMID:
26292194
43.

Polysaccharide-Protein Complexes in a Coarse-Grained Model.

Poma AB, Chwastyk M, Cieplak M.

J Phys Chem B. 2015 Sep 10;119(36):12028-41. doi: 10.1021/acs.jpcb.5b06141. Epub 2015 Aug 26.

PMID:
26291477
44.

Prevalence of Olfactory Impairment in Granulomatosis with Polyangiitis.

Zycinska K, Straburzynski M, Nitsch-Osuch A, Krupa R, Hadzik-Błaszczyk M, Cieplak M, Wardyn K.

Adv Exp Med Biol. 2016;878:1-7.

PMID:
26269029
45.

Selective electrochemical sensing of human serum albumin by semi-covalent molecular imprinting.

Cieplak M, Szwabinska K, Sosnowska M, Chandra BK, Borowicz P, Noworyta K, D'Souza F, Kutner W.

Biosens Bioelectron. 2015 Dec 15;74:960-6. doi: 10.1016/j.bios.2015.07.061. Epub 2015 Jul 29.

PMID:
26258876
46.

Multiple folding pathways of proteins with shallow knots and co-translational folding.

Chwastyk M, Cieplak M.

J Chem Phys. 2015 Jul 28;143(4):045101. doi: 10.1063/1.4927153.

PMID:
26233164
47.

Statistical radii associated with amino acids to determine the contact map: fixing the structure of a type I cohesin domain in the Clostridium thermocellum cellulosome.

Chwastyk M, Bernaola AP, Cieplak M.

Phys Biol. 2015 May 27;12(4):046002. doi: 10.1088/1478-3975/12/4/046002.

PMID:
26015431
48.

Large conformational fluctuations of the multi-domain xylanase Z of Clostridium thermocellum.

Różycki B, Cieplak M, Czjzek M.

J Struct Biol. 2015 Jul;191(1):68-75. doi: 10.1016/j.jsb.2015.05.004. Epub 2015 May 23.

PMID:
26008791
49.

Mechanostability of cohesin-dockerin complexes in a structure-based model: anisotropy and lack of universality in the force profiles.

Wojciechowski M, Thompson D, Cieplak M.

J Chem Phys. 2014 Dec 28;141(24):245103. doi: 10.1063/1.4904726.

PMID:
25554187
50.

Citrate synthase proteins in extremophilic organisms: studies within a structure-based model.

Różycki B, Cieplak M.

J Chem Phys. 2014 Dec 21;141(23):235102. doi: 10.1063/1.4903747.

PMID:
25527961

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