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Items: 1 to 50 of 107

1.

Transcriptional Regulation: Molecules, Involved Mechanisms, and Misregulation.

Casamassimi A, Ciccodicola A.

Int J Mol Sci. 2019 Mar 14;20(6). pii: E1281. doi: 10.3390/ijms20061281.

2.

Oncogenic Properties of the Antisense lncRNA COMET in BRAF- and RET-Driven Papillary Thyroid Carcinomas.

Esposito R, Esposito D, Pallante P, Fusco A, Ciccodicola A, Costa V.

Cancer Res. 2019 May 1;79(9):2124-2135. doi: 10.1158/0008-5472.CAN-18-2520. Epub 2019 Mar 12.

PMID:
30862713
3.

PPARγΔ5, a Naturally Occurring Dominant-Negative Splice Isoform, Impairs PPARγ Function and Adipocyte Differentiation.

Aprile M, Cataldi S, Ambrosio MR, D'Esposito V, Lim K, Dietrich A, Blüher M, Savage DB, Formisano P, Ciccodicola A, Costa V.

Cell Rep. 2018 Nov 6;25(6):1577-1592.e6. doi: 10.1016/j.celrep.2018.10.035.

4.

PR/SET Domain Family and Cancer: Novel Insights from the Cancer Genome Atlas.

Sorrentino A, Federico A, Rienzo M, Gazzerro P, Bifulco M, Ciccodicola A, Casamassimi A, Abbondanza C.

Int J Mol Sci. 2018 Oct 19;19(10). pii: E3250. doi: 10.3390/ijms19103250.

5.

RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins.

Li J, Deng SP, Vieira J, Thomas J, Costa V, Tseng CS, Ivankovic F, Ciccodicola A, Yu P.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay054.

6.

Human PRDM2: Structure, function and pathophysiology.

Sorrentino A, Rienzo M, Ciccodicola A, Casamassimi A, Abbondanza C.

Biochim Biophys Acta Gene Regul Mech. 2018 Jun 6. pii: S1874-9399(18)30071-3. doi: 10.1016/j.bbagrm.2018.06.002. [Epub ahead of print] Review.

PMID:
29883756
7.

Glucose impairs tamoxifen responsiveness modulating connective tissue growth factor in breast cancer cells.

Ambrosio MR, D'Esposito V, Costa V, Liguoro D, Collina F, Cantile M, Prevete N, Passaro C, Mosca G, De Laurentiis M, Di Bonito M, Botti G, Franco R, Beguinot F, Ciccodicola A, Formisano P.

Oncotarget. 2017 Nov 20;8(65):109000-109017. doi: 10.18632/oncotarget.22552. eCollection 2017 Dec 12.

8.

SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets.

Li J, Tseng CS, Federico A, Ivankovic F, Huang YS, Ciccodicola A, Swanson MS, Yu P.

Database (Oxford). 2017 Jan 1;2017. doi: 10.1093/database/bax071.

9.

Transcriptome Profiling in Human Diseases: New Advances and Perspectives.

Casamassimi A, Federico A, Rienzo M, Esposito S, Ciccodicola A.

Int J Mol Sci. 2017 Jul 29;18(8). pii: E1652. doi: 10.3390/ijms18081652. Review.

10.

Heart failure: Pilot transcriptomic analysis of cardiac tissue by RNA-sequencing.

Schiano C, Costa V, Aprile M, Grimaldi V, Maiello C, Esposito R, Soricelli A, Colantuoni V, Donatelli F, Ciccodicola A, Napoli C.

Cardiol J. 2017;24(5):539-553. doi: 10.5603/CJ.a2017.0052. Epub 2017 May 12.

11.

Pan-Cancer Mutational and Transcriptional Analysis of the Integrator Complex.

Federico A, Rienzo M, Abbondanza C, Costa V, Ciccodicola A, Casamassimi A.

Int J Mol Sci. 2017 Apr 29;18(5). pii: E936. doi: 10.3390/ijms18050936.

12.

E2 multimeric scaffold for vaccine formulation: immune response by intranasal delivery and transcriptome profile of E2-pulsed dendritic cells.

Trovato M, Maurano F, D'Apice L, Costa V, Sartorius R, Cuccaro F, McBurney SP, Krebs SJ, Prisco A, Ciccodicola A, Rossi M, Haigwood NL, De Berardinis P.

BMC Microbiol. 2016 Jul 16;16(1):152. doi: 10.1186/s12866-016-0772-x.

13.

Computational Analysis of Single Nucleotide Polymorphisms Associated with Altered Drug Responsiveness in Type 2 Diabetes.

Costa V, Federico A, Pollastro C, Ziviello C, Cataldi S, Formisano P, Ciccodicola A.

Int J Mol Sci. 2016 Jun 25;17(7). pii: E1008. doi: 10.3390/ijms17071008.

14.

Hoxa5 undergoes dynamic DNA methylation and transcriptional repression in the adipose tissue of mice exposed to high-fat diet.

Parrillo L, Costa V, Raciti GA, Longo M, Spinelli R, Esposito R, Nigro C, Vastolo V, Desiderio A, Zatterale F, Ciccodicola A, Formisano P, Miele C, Beguinot F.

Int J Obes (Lond). 2016 Jun;40(6):929-37. doi: 10.1038/ijo.2016.36. Epub 2016 Mar 16.

PMID:
26980478
15.

Alternative Splicing in Adhesion- and Motility-Related Genes in Breast Cancer.

Aversa R, Sorrentino A, Esposito R, Ambrosio MR, Amato A, Zambelli A, Ciccodicola A, D'Apice L, Costa V.

Int J Mol Sci. 2016 Jan 16;17(1). pii: E121. doi: 10.3390/ijms17010121.

16.

Pharmacogenomics of Drug Response in Type 2 Diabetes: Toward the Definition of Tailored Therapies?

Pollastro C, Ziviello C, Costa V, Ciccodicola A.

PPAR Res. 2015;2015:415149. doi: 10.1155/2015/415149. Epub 2015 Jun 15. Review.

17.

The "next-generation" knowledge of papillary thyroid carcinoma.

Costa V, Esposito R, Pallante P, Ciccodicola A, Fusco A.

Cell Cycle. 2015;14(13):2018-21. doi: 10.1080/15384101.2015.1049786. Review.

18.

Antigen delivery by filamentous bacteriophage fd displaying an anti-DEC-205 single-chain variable fragment confers adjuvanticity by triggering a TLR9-mediated immune response.

Sartorius R, D'Apice L, Trovato M, Cuccaro F, Costa V, De Leo MG, Marzullo VM, Biondo C, D'Auria S, De Matteis MA, Ciccodicola A, De Berardinis P.

EMBO Mol Med. 2015 Apr 17;7(7):973-88. doi: 10.15252/emmm.201404525. Print 2015 Jul.

19.

New somatic mutations and WNK1-B4GALNT3 gene fusion in papillary thyroid carcinoma.

Costa V, Esposito R, Ziviello C, Sepe R, Bim LV, Cacciola NA, Decaussin-Petrucci M, Pallante P, Fusco A, Ciccodicola A.

Oncotarget. 2015 May 10;6(13):11242-51.

20.

Novel transcription factor variants through RNA-sequencing: the importance of being "alternative".

Scarpato M, Federico A, Ciccodicola A, Costa V.

Int J Mol Sci. 2015 Jan 13;16(1):1755-71. doi: 10.3390/ijms16011755.

21.

RNA-Seq for the identification of novel Mediator transcripts in endothelial progenitor cells.

Rienzo M, Costa V, Scarpato M, Schiano C, Casamassimi A, Grimaldi V, Ciccodicola A, Napoli C.

Gene. 2014 Aug 15;547(1):98-105. doi: 10.1016/j.gene.2014.06.034. Epub 2014 Jun 19.

PMID:
24952135
22.

PPARG in Human Adipogenesis: Differential Contribution of Canonical Transcripts and Dominant Negative Isoforms.

Aprile M, Ambrosio MR, D'Esposito V, Beguinot F, Formisano P, Costa V, Ciccodicola A.

PPAR Res. 2014;2014:537865. doi: 10.1155/2014/537865. Epub 2014 Mar 23.

23.

AnaLysis of Expression on human chromosome 21, ALE-HSA21: a pilot integrated web resource.

Scarpato M, Esposito R, Evangelista D, Aprile M, Ambrosio MR, Angelini C, Ciccodicola A, Costa V.

Database (Oxford). 2014 Feb 25;2014:bau009. doi: 10.1093/database/bau009. Print 2014.

24.

Analysis of SEMA6B gene expression in breast cancer: identification of a new isoform.

D'Apice L, Costa V, Valente C, Trovato M, Pagani A, Manera S, Regolo L, Zambelli A, Ciccodicola A, De Berardinis P.

Biochim Biophys Acta. 2013 Oct;1830(10):4543-53. doi: 10.1016/j.bbagen.2013.05.003. Epub 2013 May 9.

PMID:
23665584
25.

Evidence of Bacteroides fragilis protection from Bartonella henselae-induced damage.

Sommese L, Pagliuca C, Avallone B, Ippolito R, Casamassimi A, Costa V, Colicchio R, Cerciello R, D'Armiento M, Scarpato M, Giovane A, Pastore G, Infante T, Ciccodicola A, Fiorito C, D'Armiento FP, Salvatore P, Napoli C.

PLoS One. 2012;7(11):e49653. doi: 10.1371/journal.pone.0049653. Epub 2012 Nov 15.

26.

Non-coding RNA and pseudogenes in neurodegenerative diseases: "The (un)Usual Suspects".

Costa V, Esposito R, Aprile M, Ciccodicola A.

Front Genet. 2012 Oct 31;3:231. doi: 10.3389/fgene.2012.00231. eCollection 2012.

27.

RNA-Seq and human complex diseases: recent accomplishments and future perspectives.

Costa V, Aprile M, Esposito R, Ciccodicola A.

Eur J Hum Genet. 2013 Feb;21(2):134-42. doi: 10.1038/ejhg.2012.129. Epub 2012 Jun 27. Review.

28.

Massive-scale RNA-Seq analysis of non ribosomal transcriptome in human trisomy 21.

Costa V, Angelini C, D'Apice L, Mutarelli M, Casamassimi A, Sommese L, Gallo MA, Aprile M, Esposito R, Leone L, Donizetti A, Crispi S, Rienzo M, Sarubbi B, Calabrò R, Picardi M, Salvatore P, Infante T, De Berardinis P, Napoli C, Ciccodicola A.

PLoS One. 2011 Apr 20;6(4):e18493. doi: 10.1371/journal.pone.0018493.

29.

Is PPARG the key gene in diabetic retinopathy?

Costa V, Ciccodicola A.

Br J Pharmacol. 2012 Jan;165(1):1-3. doi: 10.1111/j.1476-5381.2011.01443.x.

30.

PPARG: Gene Expression Regulation and Next-Generation Sequencing for Unsolved Issues.

Costa V, Gallo MA, Letizia F, Aprile M, Casamassimi A, Ciccodicola A.

PPAR Res. 2010;2010. pii: 409168. doi: 10.1155/2010/409168. Epub 2010 Sep 8.

31.

Molecular and clinical characterization of albinism in a large cohort of Italian patients.

Gargiulo A, Testa F, Rossi S, Di Iorio V, Fecarotta S, de Berardinis T, Iovine A, Magli A, Signorini S, Fazzi E, Galantuomo MS, Fossarello M, Montefusco S, Ciccodicola A, Neri A, Macaluso C, Simonelli F, Surace EM.

Invest Ophthalmol Vis Sci. 2011 Mar 14;52(3):1281-9. doi: 10.1167/iovs.10-6091. Print 2011 Mar.

32.

Impairment of circulating endothelial progenitors in Down syndrome.

Costa V, Sommese L, Casamassimi A, Colicchio R, Angelini C, Marchesano V, Milone L, Farzati B, Giovane A, Fiorito C, Rienzo M, Picardi M, Avallone B, Marco Corsi M, Sarubbi B, Calabrò R, Salvatore P, Ciccodicola A, Napoli C.

BMC Med Genomics. 2010 Sep 13;3:40. doi: 10.1186/1755-8794-3-40.

33.

Uncovering the complexity of transcriptomes with RNA-Seq.

Costa V, Angelini C, De Feis I, Ciccodicola A.

J Biomed Biotechnol. 2010;2010:853916. doi: 10.1155/2010/853916. Epub 2010 Jun 27. Review.

34.

Nutritional genomics era: opportunities toward a genome-tailored nutritional regimen.

Costa V, Casamassimi A, Ciccodicola A.

J Nutr Biochem. 2010 Jun;21(6):457-67. doi: 10.1016/j.jnutbio.2009.10.012. Epub 2010 Mar 16. Review.

PMID:
20233651
35.

Screening for GJB2 and GJB6 gene mutations in patients from Campania region with sensorineural hearing loss.

Chinetti V, Iossa S, Auletta G, Laria C, De Luca M, Di Leva F, Riccardi P, Giannini P, Gasparini P, Ciccodicola A, Marciano E, Franzè A.

Int J Audiol. 2010 Apr;49(4):326-31. doi: 10.3109/14992021003601756.

PMID:
20233142
36.

A novel germline mutation in peroxisome proliferator-activated receptor gamma gene associated with large intestine polyp formation and dyslipidemia.

Capaccio D, Ciccodicola A, Sabatino L, Casamassimi A, Pancione M, Fucci A, Febbraro A, Merlino A, Graziano G, Colantuoni V.

Biochim Biophys Acta. 2010 Jun;1802(6):572-81. doi: 10.1016/j.bbadis.2010.01.012. Epub 2010 Feb 1.

37.

DDX11L: a novel transcript family emerging from human subtelomeric regions.

Costa V, Casamassimi A, Roberto R, Gianfrancesco F, Matarazzo MR, D'Urso M, D'Esposito M, Rocchi M, Ciccodicola A.

BMC Genomics. 2009 May 28;10:250. doi: 10.1186/1471-2164-10-250.

38.

Characterization of a novel polymorphism in PPARG regulatory region associated with type 2 diabetes and diabetic retinopathy in Italy.

Costa V, Casamassimi A, Esposito K, Villani A, Capone M, Iannella R, Schisano B, Ciotola M, Di Palo C, Corrado FC, Santangelo F, Giugliano D, Ciccodicola A.

J Biomed Biotechnol. 2009;2009:126917. doi: 10.1155/2009/126917. Epub 2008 Dec 25.

39.

Investigation of gamma-aminobutyric acid (GABA) A receptors genes and migraine susceptibility.

Fernandez F, Esposito T, Lea RA, Colson NJ, Ciccodicola A, Gianfrancesco F, Griffiths LR.

BMC Med Genet. 2008 Dec 16;9:109. doi: 10.1186/1471-2350-9-109.

40.

New evidence for the correlation of the p.G130V mutation in the GJB2 gene and syndromic hearing loss with palmoplantar keratoderma.

Iossa S, Chinetti V, Auletta G, Laria C, De Luca M, Rienzo M, Giannini P, Delfino M, Ciccodicola A, Marciano E, Franzé A.

Am J Med Genet A. 2009 Feb 15;149A(4):685-8. doi: 10.1002/ajmg.a.32462.

PMID:
18688874
41.

ZPLD1 gene is disrupted in a patient with balanced translocation that exhibits cerebral cavernous malformations.

Gianfrancesco F, Esposito T, Penco S, Maglione V, Liquori CL, Patrosso MC, Zuffardi O, Ciccodicola A, Marchuk DA, Squitieri F.

Neuroscience. 2008 Aug 13;155(2):345-9. doi: 10.1016/j.neuroscience.2008.05.030. Epub 2008 Jul 16.

PMID:
18632209
42.

Detrimental effects of Bartonella henselae are counteracted by L-arginine and nitric oxide in human endothelial progenitor cells.

Salvatore P, Casamassimi A, Sommese L, Fiorito C, Ciccodicola A, Rossiello R, Avallone B, Grimaldi V, Costa V, Rienzo M, Colicchio R, Williams-Ignarro S, Pagliarulo C, Prudente ME, Abbondanza C, Lamberti F, Baroni A, Buommino E, Farzati B, Tufano MA, Ignarro LJ, Napoli C.

Proc Natl Acad Sci U S A. 2008 Jul 8;105(27):9427-32. doi: 10.1073/pnas.0803602105. Epub 2008 Jun 30.

43.

Identification and expression analysis of novel Jakmip1 transcripts.

Costa V, Conte I, Ziviello C, Casamassimi A, Alfano G, Banfi S, Ciccodicola A.

Gene. 2007 Nov 1;402(1-2):1-8. Epub 2007 Jul 14.

PMID:
17761393
44.

Clinical and molecular genetics of Leber's congenital amaurosis: a multicenter study of Italian patients.

Simonelli F, Ziviello C, Testa F, Rossi S, Fazzi E, Bianchi PE, Fossarello M, Signorini S, Bertone C, Galantuomo S, Brancati F, Valente EM, Ciccodicola A, Rinaldi E, Auricchio A, Banfi S.

Invest Ophthalmol Vis Sci. 2007 Sep;48(9):4284-90.

PMID:
17724218
45.

Filamin A is mutated in X-linked chronic idiopathic intestinal pseudo-obstruction with central nervous system involvement.

Gargiulo A, Auricchio R, Barone MV, Cotugno G, Reardon W, Milla PJ, Ballabio A, Ciccodicola A, Auricchio A.

Am J Hum Genet. 2007 Apr;80(4):751-8. Epub 2007 Feb 26.

46.

Experimental colitis: decreased Octn2 and Atb0+ expression in rat colonocytes induces carnitine depletion that is reversible by carnitine-loaded liposomes.

D'Argenio G, Calvani M, Casamassimi A, Petillo O, Margarucci S, Rienzo M, Peluso I, Calvani R, Ciccodicola A, Caporaso N, Peluso G.

FASEB J. 2006 Dec;20(14):2544-6. Epub 2006 Oct 25.

PMID:
17065219
47.

Clinical phenotype of an Italian family with a new mutation in the PRPF8 gene.

Testa F, Ziviello C, Rinaldi M, Rossi S, Di Iorio V, Interlandi E, Ciccodicola A, Banfi S, Simonelli F.

Eur J Ophthalmol. 2006 Sep-Oct;16(5):779-81.

PMID:
17061239
48.

Identification of a novel mutation in the myosin VIIA motor domain in a family with autosomal dominant hearing loss (DFNA11).

Di Leva F, D'Adamo P, Cubellis MV, D'Eustacchio A, Errichiello M, Saulino C, Auletta G, Giannini P, Donaudy F, Ciccodicola A, Gasparini P, Franzè A, Marciano E.

Audiol Neurootol. 2006;11(3):157-64. Epub 2006 Jan 9.

PMID:
16449806
49.

Genetic and epigenetic alterations of RB2/p130 tumor suppressor gene in human sporadic retinoblastoma: implications for pathogenesis and therapeutic approach.

Tosi GM, Trimarchi C, Macaluso M, La Sala D, Ciccodicola A, Lazzi S, Massaro-Giordano M, Caporossi A, Giordano A, Cinti C.

Oncogene. 2005 Sep 1;24(38):5827-36.

PMID:
16007224
50.

Molecular genetics of autosomal dominant retinitis pigmentosa (ADRP): a comprehensive study of 43 Italian families.

Ziviello C, Simonelli F, Testa F, Anastasi M, Marzoli SB, Falsini B, Ghiglione D, Macaluso C, Manitto MP, Garrè C, Ciccodicola A, Rinaldi E, Banfi S.

J Med Genet. 2005 Jul;42(7):e47.

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