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Items: 34

1.

Argonaute Proteins: From Structure to Function in Development and Pathological Cell Fate Determination.

Müller M, Fazi F, Ciaudo C.

Front Cell Dev Biol. 2020 Jan 22;7:360. doi: 10.3389/fcell.2019.00360. eCollection 2019. Review.

2.

Regulation of LINE-1 Elements by miR-128 Is Not Conserved in Mouse Embryonic Stem Cells.

Bodak M, Yu J, Ciaudo C.

Front Genet. 2018 Dec 20;9:683. doi: 10.3389/fgene.2018.00683. eCollection 2018. No abstract available.

3.

Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair.

Savic N, Ringnalda FC, Lindsay H, Berk C, Bargsten K, Li Y, Neri D, Robinson MD, Ciaudo C, Hall J, Jinek M, Schwank G.

Elife. 2018 May 29;7. pii: e33761. doi: 10.7554/eLife.33761.

4.

Argonaute 2 Is Required for Extra-embryonic Endoderm Differentiation of Mouse Embryonic Stem Cells.

Ngondo RP, Cirera-Salinas D, Yu J, Wischnewski H, Bodak M, Vandormael-Pournin S, Geiselmann A, Wettstein R, Luitz J, Cohen-Tannoudji M, Ciaudo C.

Stem Cell Reports. 2018 Feb 13;10(2):461-476. doi: 10.1016/j.stemcr.2017.12.023. Epub 2018 Jan 26.

5.

Comparative analysis of differential gene expression tools for RNA sequencing time course data.

Spies D, Renz PF, Beyer TA, Ciaudo C.

Brief Bioinform. 2019 Jan 18;20(1):288-298. doi: 10.1093/bib/bbx115.

6.

Vector Integration Sites Identification for Gene-Trap Screening in Mammalian Haploid Cells.

Yu J, Ciaudo C.

Sci Rep. 2017 Mar 17;7:44736. doi: 10.1038/srep44736.

7.

Versatility of DGCR8 controls stem cell fate.

Cirera-Salinas D, Bodak M, Ciaudo C.

Cell Cycle. 2017 Apr 18;16(8):729-730. doi: 10.1080/15384101.2017.1302215. Epub 2017 Mar 8. No abstract available.

8.

Dicer, a new regulator of pluripotency exit and LINE-1 elements in mouse embryonic stem cells.

Bodak M, Cirera-Salinas D, Yu J, Ngondo RP, Ciaudo C.

FEBS Open Bio. 2017 Jan 11;7(2):204-220. doi: 10.1002/2211-5463.12174. eCollection 2017 Feb.

9.

The Role of RNA Interference in Stem Cell Biology: Beyond the Mutant Phenotypes.

Bodak M, Cirera-Salinas D, Luitz J, Ciaudo C.

J Mol Biol. 2017 May 19;429(10):1532-1543. doi: 10.1016/j.jmb.2017.01.014. Epub 2017 Jan 21. Review.

10.

Noncanonical function of DGCR8 controls mESC exit from pluripotency.

Cirera-Salinas D, Yu J, Bodak M, Ngondo RP, Herbert KM, Ciaudo C.

J Cell Biol. 2017 Feb;216(2):355-366. doi: 10.1083/jcb.201606073. Epub 2017 Jan 18.

11.

A Small-Molecule Inhibitor of Lin28.

Roos M, Pradère U, Ngondo RP, Behera A, Allegrini S, Civenni G, Zagalak JA, Marchand JR, Menzi M, Towbin H, Scheuermann J, Neri D, Caflisch A, Catapano CV, Ciaudo C, Hall J.

ACS Chem Biol. 2016 Oct 21;11(10):2773-2781. Epub 2016 Aug 22.

PMID:
27548809
12.

LINE-1 Activity in Facultative Heterochromatin Formation during X Chromosome Inactivation.

Chow JC, Ciaudo C, Fazzari MJ, Mise N, Servant N, Glass JL, Attreed M, Avner P, Wutz A, Barillot E, Greally JM, Voinnet O, Heard E.

Cell. 2016 Jul 28;166(3):782. doi: 10.1016/j.cell.2016.07.013. No abstract available.

13.

Monitoring Long Interspersed Nuclear Element 1 Expression During Mouse Embryonic Stem Cell Differentiation.

Bodak M, Ciaudo C.

Methods Mol Biol. 2016;1400:237-59. doi: 10.1007/978-1-4939-3372-3_16.

PMID:
26895058
14.

The Lin28/let-7 axis is critical for myelination in the peripheral nervous system.

Gökbuget D, Pereira JA, Bachofner S, Marchais A, Ciaudo C, Stoffel M, Schulte JH, Suter U.

Nat Commun. 2015 Oct 14;6:8584. doi: 10.1038/ncomms9584.

15.

Dynamics in Transcriptomics: Advancements in RNA-seq Time Course and Downstream Analysis.

Spies D, Ciaudo C.

Comput Struct Biotechnol J. 2015 Aug 24;13:469-77. doi: 10.1016/j.csbj.2015.08.004. eCollection 2015. Review.

16.

Correction: RNAi-Dependent and Independent Control of LINE1 Accumulation and Mobility in Mouse Embryonic Stem Cells.

Ciaudo C, Jay F, Okamoto I, Chen CJ, Sarazin A, Servant N, Barillot E, Heard E, Voinnet O.

PLoS Genet. 2015 May 14;11(5):e1005247. doi: 10.1371/journal.pgen.1005247. eCollection 2015 May. No abstract available.

17.

Generation of a Knockout Mouse Embryonic Stem Cell Line Using a Paired CRISPR/Cas9 Genome Engineering Tool.

Wettstein R, Bodak M, Ciaudo C.

Methods Mol Biol. 2016;1341:321-43. doi: 10.1007/7651_2015_213.

PMID:
25762293
18.

Regulation of LINE-1 in mammals.

Bodak M, Yu J, Ciaudo C.

Biomol Concepts. 2014 Oct;5(5):409-28. doi: 10.1515/bmc-2014-0018. Review.

PMID:
25367621
19.

Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways.

Gruber AJ, Grandy WA, Balwierz PJ, Dimitrova YA, Pachkov M, Ciaudo C, Nimwegen Ev, Zavolan M.

Nucleic Acids Res. 2014 Aug;42(14):9313-26. doi: 10.1093/nar/gku544. Epub 2014 Jul 16.

20.

The intestinal microbiota interferes with the microRNA response upon oral Listeria infection.

Archambaud C, Sismeiro O, Toedling J, Soubigou G, Bécavin C, Lechat P, Lebreton A, Ciaudo C, Cossart P.

mBio. 2013 Dec 10;4(6):e00707-13. doi: 10.1128/mBio.00707-13.

21.

RNAi-dependent and independent control of LINE1 accumulation and mobility in mouse embryonic stem cells.

Ciaudo C, Jay F, Okamoto I, Chen CJ, Sarazin A, Servant N, Barillot E, Heard E, Voinnet O.

PLoS Genet. 2013 Nov;9(11):e1003791. doi: 10.1371/journal.pgen.1003791. Epub 2013 Nov 7. Erratum in: PLoS Genet. 2015 May;11(5):e1005247. Retraction in: PLoS Genet. 2015 Sep;11(9):e1005519.

22.

Antiviral RNA interference in mammalian cells.

Maillard PV, Ciaudo C, Marchais A, Li Y, Jay F, Ding SW, Voinnet O.

Science. 2013 Oct 11;342(6155):235-8. doi: 10.1126/science.1241930.

23.

An RNA tool kit to study the status of mouse ES cells: sex determination and stemness.

Jay F, Ciaudo C.

Methods. 2013 Sep 1;63(1):85-92. doi: 10.1016/j.ymeth.2013.02.016. Epub 2013 Mar 5.

PMID:
23473779
24.

ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data.

Chen CJ, Servant N, Toedling J, Sarazin A, Marchais A, Duvernois-Berthet E, Cognat V, Colot V, Voinnet O, Heard E, Ciaudo C, Barillot E.

Bioinformatics. 2012 Dec 1;28(23):3147-9. doi: 10.1093/bioinformatics/bts587. Epub 2012 Oct 7.

PMID:
23044543
25.

Deep-sequencing protocols influence the results obtained in small-RNA sequencing.

Toedling J, Servant N, Ciaudo C, Farinelli L, Voinnet O, Heard E, Barillot E.

PLoS One. 2012;7(2):e32724. doi: 10.1371/journal.pone.0032724. Epub 2012 Feb 27.

26.

Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles.

Jouneau A, Ciaudo C, Sismeiro O, Brochard V, Jouneau L, Vandormael-Pournin S, Coppée JY, Zhou Q, Heard E, Antoniewski C, Cohen-Tannoudji M.

RNA. 2012 Feb;18(2):253-64. doi: 10.1261/rna.028878.111. Epub 2011 Dec 27.

27.

Girafe--an R/Bioconductor package for functional exploration of aligned next-generation sequencing reads.

Toedling J, Ciaudo C, Voinnet O, Heard E, Barillot E.

Bioinformatics. 2010 Nov 15;26(22):2902-3. doi: 10.1093/bioinformatics/btq531. Epub 2010 Sep 21.

28.

LINE-1 activity in facultative heterochromatin formation during X chromosome inactivation.

Chow JC, Ciaudo C, Fazzari MJ, Mise N, Servant N, Glass JL, Attreed M, Avner P, Wutz A, Barillot E, Greally JM, Voinnet O, Heard E.

Cell. 2010 Jun 11;141(6):956-69. doi: 10.1016/j.cell.2010.04.042.

29.

Highly dynamic and sex-specific expression of microRNAs during early ES cell differentiation.

Ciaudo C, Servant N, Cognat V, Sarazin A, Kieffer E, Viville S, Colot V, Barillot E, Heard E, Voinnet O.

PLoS Genet. 2009 Aug;5(8):e1000620. doi: 10.1371/journal.pgen.1000620. Epub 2009 Aug 28. Erratum in: PLoS Genet. 2015 Mar;11(3):e1005077.

30.

Multivesicular bodies associate with components of miRNA effector complexes and modulate miRNA activity.

Gibbings DJ, Ciaudo C, Erhardt M, Voinnet O.

Nat Cell Biol. 2009 Sep;11(9):1143-9. doi: 10.1038/ncb1929. Epub 2009 Aug 16. Erratum in: Nat Cell Biol. 2009 Oct;11(10):1272.

PMID:
19684575
31.

A role for RNAi in the selective correction of DNA methylation defects.

Teixeira FK, Heredia F, Sarazin A, Roudier F, Boccara M, Ciaudo C, Cruaud C, Poulain J, Berdasco M, Fraga MF, Voinnet O, Wincker P, Esteller M, Colot V.

Science. 2009 Mar 20;323(5921):1600-4. doi: 10.1126/science.1165313. Epub 2009 Jan 29.

32.

Nuclear mRNA degradation pathway(s) are implicated in Xist regulation and X chromosome inactivation.

Ciaudo C, Bourdet A, Cohen-Tannoudji M, Dietz HC, Rougeulle C, Avner P.

PLoS Genet. 2006 Jun;2(6):e94. Epub 2006 Jun 16.

33.

A SAGE approach to identifying novel trans-acting factors involved in the X inactivation process.

Bourdet A, Ciaudo C, Zakin L, Elalouf JM, Rusniok C, Weissenbach J, Avner P.

Cytogenet Genome Res. 2006;113(1-4):325-35. Erratum in: Cytogenet Genome Res. 2006;114(2):130. Rusniol, C [corrected to Rusniok, C].

PMID:
16575197
34.

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