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Items: 1 to 50 of 59

1.

The DNA Alkylguanine DNA Alkyltransferase-2 (AGT-2) Of Caenorhabditis Elegans Is Involved In Meiosis And Early Development Under Physiological Conditions.

Serpe M, Forenza C, Adamo A, Russo N, Perugino G, Ciaramella M, Valenti A.

Sci Rep. 2019 May 3;9(1):6889. doi: 10.1038/s41598-019-43394-1.

2.

Fin healing and regeneration in sturgeon.

Allen PJ, Baumgartner W, Brinkman E, DeVries RJ, Stewart HA, Aboagye DL, Ramee SW, Ciaramella MA, Culpepper CM 3rd, Petrie-Hanson L.

J Fish Biol. 2018 Nov;93(5):917-930. doi: 10.1111/jfb.13794.

PMID:
30198116
3.

Structure and Properties of DNA Molecules Over The Full Range of Biologically Relevant Supercoiling States.

Bettotti P, Visone V, Lunelli L, Perugino G, Ciaramella M, Valenti A.

Sci Rep. 2018 Apr 18;8(1):6163. doi: 10.1038/s41598-018-24499-5.

4.

Every OGT Is Illuminated … by Fluorescent and Synchrotron Lights.

Miggiano R, Valenti A, Rossi F, Rizzi M, Perugino G, Ciaramella M.

Int J Mol Sci. 2017 Dec 5;18(12). pii: E2613. doi: 10.3390/ijms18122613. Review.

5.

In vivo and in vitro protein imaging in thermophilic archaea by exploiting a novel protein tag.

Visone V, Han W, Perugino G, Del Monaco G, She Q, Rossi M, Valenti A, Ciaramella M.

PLoS One. 2017 Oct 3;12(10):e0185791. doi: 10.1371/journal.pone.0185791. eCollection 2017.

6.

Proteomic approach to characterize biochemistry of meat quality defects.

Schilling MW, Suman SP, Zhang X, Nair MN, Desai MA, Cai K, Ciaramella MA, Allen PJ.

Meat Sci. 2017 Oct;132:131-138. doi: 10.1016/j.meatsci.2017.04.018. Epub 2017 Apr 21. Review.

PMID:
28454727
7.

Interdomain interactions rearrangements control the reaction steps of a thermostable DNA alkyltransferase.

Morrone C, Miggiano R, Serpe M, Massarotti A, Valenti A, Del Monaco G, Rossi M, Rossi F, Rizzi M, Perugino G, Ciaramella M.

Biochim Biophys Acta Gen Subj. 2017 Feb;1861(2):86-96. doi: 10.1016/j.bbagen.2016.10.020. Epub 2016 Oct 22.

PMID:
27777086
8.

Differential abundance of muscle proteome in cultured channel catfish (Ictalurus punctatus) subjected to ante-mortem stressors and its impact on fillet quality.

Ciaramella MA, Nair MN, Suman SP, Allen PJ, Schilling MW.

Comp Biochem Physiol Part D Genomics Proteomics. 2016 Dec;20:10-18. doi: 10.1016/j.cbd.2016.06.011. Epub 2016 Jul 25.

PMID:
27484844
9.

The Effects of Sequential Environmental and Harvest Stressors on the Sensory Characteristics of Cultured Channel Catfish (Ictalurus Punctatus) Fillets.

Ciaramella MA, Kim T, Avery JL, Allen PJ, Schilling MW.

J Food Sci. 2016 Aug;81(8):S2031-8. doi: 10.1111/1750-3841.13374. Epub 2016 Jun 22.

PMID:
27333086
10.

RNA topoisomerase is prevalent in all domains of life and associates with polyribosomes in animals.

Ahmad M, Xue Y, Lee SK, Martindale JL, Shen W, Li W, Zou S, Ciaramella M, Debat H, Nadal M, Leng F, Zhang H, Wang Q, Siaw GE, Niu H, Pommier Y, Gorospe M, Hsieh TS, Tse-Dinh YC, Xu D, Wang W.

Nucleic Acids Res. 2016 Jul 27;44(13):6335-49. doi: 10.1093/nar/gkw508. Epub 2016 Jun 1.

11.

Erratum to: A novel thermostable protein-tag: optimization of the Sulfolobus solfataricus DNA-alkyl-transferase by protein engineering.

Vettone A, Serpe M, Hidalgo A, Berenguer J, Del Monaco G, Valenti A, Rossi M, Ciaramella M, Perugino G.

Extremophiles. 2016 Jan;20(1):15-7. doi: 10.1007/s00792-015-0803-9. No abstract available.

PMID:
26666951
12.

NurA Is Endowed with Endo- and Exonuclease Activities that Are Modulated by HerA: New Insight into Their Role in DNA-End Processing.

De Falco M, Catalano F, Rossi M, Ciaramella M, De Felice M.

PLoS One. 2015 Nov 11;10(11):e0142345. doi: 10.1371/journal.pone.0142345. eCollection 2015.

13.

Crystal structure of Mycobacterium tuberculosis O6-methylguanine-DNA methyltransferase protein clusters assembled on to damaged DNA.

Miggiano R, Perugino G, Ciaramella M, Serpe M, Rejman D, Páv O, Pohl R, Garavaglia S, Lahiri S, Rizzi M, Rossi F.

Biochem J. 2016 Jan 15;473(2):123-33. doi: 10.1042/BJ20150833. Epub 2015 Oct 28.

PMID:
26512127
14.

A novel thermostable protein-tag: optimization of the Sulfolobus solfataricus DNA- alkyl-transferase by protein engineering.

Vettone A, Serpe M, Hidalgo A, Berenguer J, del Monaco G, Valenti A, Rossi M, Ciaramella M, Perugino G.

Extremophiles. 2016 Jan;20(1):1-13. doi: 10.1007/s00792-015-0791-9. Erratum in: Extremophiles. 2016 Jan;20(1):15-7.

PMID:
26499124
15.

Structure-function relationships governing activity and stability of a DNA alkylation damage repair thermostable protein.

Perugino G, Miggiano R, Serpe M, Vettone A, Valenti A, Lahiri S, Rossi F, Rossi M, Rizzi M, Ciaramella M.

Nucleic Acids Res. 2015 Oct 15;43(18):8801-16. doi: 10.1093/nar/gkv774. Epub 2015 Jul 30.

16.

Chromatin structure and dynamics in hot environments: architectural proteins and DNA topoisomerases of thermophilic archaea.

Visone V, Vettone A, Serpe M, Valenti A, Perugino G, Rossi M, Ciaramella M.

Int J Mol Sci. 2014 Sep 25;15(9):17162-87. doi: 10.3390/ijms150917162. Review.

17.

Genome stability: recent insights in the topoisomerase reverse gyrase and thermophilic DNA alkyltransferase.

Vettone A, Perugino G, Rossi M, Valenti A, Ciaramella M.

Extremophiles. 2014 Sep;18(5):895-904. doi: 10.1007/s00792-014-0662-9. Epub 2014 Aug 8. Review.

PMID:
25102812
18.

The reverse gyrase from Pyrobaculum calidifontis, a novel extremely thermophilic DNA topoisomerase endowed with DNA unwinding and annealing activities.

Jamroze A, Perugino G, Valenti A, Rashid N, Rossi M, Akhtar M, Ciaramella M.

J Biol Chem. 2014 Feb 7;289(6):3231-43. doi: 10.1074/jbc.M113.517649. Epub 2013 Dec 17.

19.

Biochemical and structural studies of the Mycobacterium tuberculosis O6-methylguanine methyltransferase and mutated variants.

Miggiano R, Casazza V, Garavaglia S, Ciaramella M, Perugino G, Rizzi M, Rossi F.

J Bacteriol. 2013 Jun;195(12):2728-36. doi: 10.1128/JB.02298-12. Epub 2013 Apr 5.

20.

Synergic and opposing activities of thermophilic RecQ-like helicase and topoisomerase 3 proteins in Holliday junction processing and replication fork stabilization.

Valenti A, De Felice M, Perugino G, Bizard A, Nadal M, Rossi M, Ciaramella M.

J Biol Chem. 2012 Aug 31;287(36):30282-95. doi: 10.1074/jbc.M112.366377. Epub 2012 Jun 21.

21.

Activity and regulation of archaeal DNA alkyltransferase: conserved protein involved in repair of DNA alkylation damage.

Perugino G, Vettone A, Illiano G, Valenti A, Ferrara MC, Rossi M, Ciaramella M.

J Biol Chem. 2012 Feb 3;287(6):4222-31. doi: 10.1074/jbc.M111.308320. Epub 2011 Dec 13. Erratum in: J Biol Chem. 2015 Jan 9;290(2):885.

22.

Positive supercoiling in thermophiles and mesophiles: of the good and evil.

Valenti A, Perugino G, Rossi M, Ciaramella M.

Biochem Soc Trans. 2011 Jan;39(1):58-63. doi: 10.1042/BST0390058. Review.

PMID:
21265747
23.

The archaeal topoisomerase reverse gyrase is a helix-destabilizing protein that unwinds four-way DNA junctions.

Valenti A, Perugino G, Varriale A, D'Auria S, Rossi M, Ciaramella M.

J Biol Chem. 2010 Nov 19;285(47):36532-41. doi: 10.1074/jbc.M110.169029. Epub 2010 Sep 17.

24.

Inhibition of translesion DNA polymerase by archaeal reverse gyrase.

Valenti A, Perugino G, Nohmi T, Rossi M, Ciaramella M.

Nucleic Acids Res. 2009 Jul;37(13):4287-95. doi: 10.1093/nar/gkp386. Epub 2009 May 14.

25.

Reverse gyrase and genome stability in hyperthermophilic organisms.

Perugino G, Valenti A, D'amaro A, Rossi M, Ciaramella M.

Biochem Soc Trans. 2009 Feb;37(Pt 1):69-73. doi: 10.1042/BST0370069. Review.

PMID:
19143604
26.

The prefoldin of the crenarchaeon Sulfolobus solfataricus.

D'Amaro A, Valenti A, Napoli A, Rossi M, Ciaramella M.

Protein Pept Lett. 2008;15(10):1055-62.

PMID:
19075815
27.

Dissection of reverse gyrase activities: insight into the evolution of a thermostable molecular machine.

Valenti A, Perugino G, D'Amaro A, Cacace A, Napoli A, Rossi M, Ciaramella M.

Nucleic Acids Res. 2008 Aug;36(14):4587-97. doi: 10.1093/nar/gkn418. Epub 2008 Jul 9.

28.

Reverse gyrase: an unusual DNA manipulator of hyperthermophilic organisms.

D'Amaro A, Rossi M, Ciaramella M.

Ital J Biochem. 2007 Jun;56(2):103-9. Review.

PMID:
17722650
29.

Lack of strand-specific repair of UV-induced DNA lesions in three genes of the archaeon Sulfolobus solfataricus.

Romano V, Napoli A, Salerno V, Valenti A, Rossi M, Ciaramella M.

J Mol Biol. 2007 Jan 26;365(4):921-9. Epub 2006 Oct 19.

PMID:
17113105
30.

Selective degradation of reverse gyrase and DNA fragmentation induced by alkylating agent in the archaeon Sulfolobus solfataricus.

Valenti A, Napoli A, Ferrara MC, Nadal M, Rossi M, Ciaramella M.

Nucleic Acids Res. 2006 Apr 14;34(7):2098-108. Print 2006.

31.

Another extreme genome: how to live at pH 0.

Ciaramella M, Napoli A, Rossi M.

Trends Microbiol. 2005 Feb;13(2):49-51. Review.

PMID:
15680761
32.

Functional interaction of reverse gyrase with single-strand binding protein of the archaeon Sulfolobus.

Napoli A, Valenti A, Salerno V, Nadal M, Garnier F, Rossi M, Ciaramella M.

Nucleic Acids Res. 2005 Jan 26;33(2):564-76. Print 2005.

33.

Reverse gyrase recruitment to DNA after UV light irradiation in Sulfolobus solfataricus.

Napoli A, Valenti A, Salerno V, Nadal M, Garnier F, Rossi M, Ciaramella M.

J Biol Chem. 2004 Aug 6;279(32):33192-8. Epub 2004 Jun 8.

34.

Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus.

Salerno V, Napoli A, White MF, Rossi M, Ciaramella M.

Nucleic Acids Res. 2003 Nov 1;31(21):6127-38.

35.

Extremophiles 2002.

Rossi M, Ciaramella M, Cannio R, Pisani FM, Moracci M, Bartolucci S.

J Bacteriol. 2003 Jul;185(13):3683-9. No abstract available.

36.

Molecular biology of extremophiles: recent progress on the hyperthermophilic archaeon Sulfolobus.

Ciaramella M, Pisani FM, Rossi M.

Antonie Van Leeuwenhoek. 2002 Aug;81(1-4):85-97. Review.

PMID:
12448708
37.

DNA bending, compaction and negative supercoiling by the architectural protein Sso7d of Sulfolobus solfataricus.

Napoli A, Zivanovic Y, Bocs C, Buhler C, Rossi M, Forterre P, Ciaramella M.

Nucleic Acids Res. 2002 Jun 15;30(12):2656-62.

38.
39.

Enzymatic synthesis of oligosaccharides by two glycosyl hydrolases of Sulfolobus solfataricus.

Moracci M, Trincone A, Cobucci-Ponzano B, Perugino G, Ciaramella M, Rossi M.

Extremophiles. 2001 Jun;5(3):145-52. Review.

PMID:
11453457
40.

Beta-glycosidase from Sulfolobus solfataricus.

Moracci M, Ciaramella M, Rossi M.

Methods Enzymol. 2001;330:201-15. No abstract available.

PMID:
11210499
41.

A novel member of the bacterial-archaeal regulator family is a nonspecific dna-binding protein and induces positive supercoiling.

Napoli A, Kvaratskelia M, White MF, Rossi M, Ciaramella M.

J Biol Chem. 2001 Apr 6;276(14):10745-52. Epub 2001 Jan 8.

42.

Activity and stability of hyperthermophilic enzymes: a comparative study on two archaeal beta-glycosidases.

Pouwels J, Moracci M, Cobucci-Ponzano B, Perugino G, van der Oost J, Kaper T, Lebbink JH, de Vos WM, Ciaramella M, Rossi M.

Extremophiles. 2000 Jun;4(3):157-64.

PMID:
10879560
43.

An Lrp-like protein of the hyperthermophilic archaeon Sulfolobus solfataricus which binds to its own promoter.

Napoli A, van der Oost J, Sensen CW, Charlebois RL, Rossi M, Ciaramella M.

J Bacteriol. 1999 Mar;181(5):1474-80.

45.

Molecular biology of hyperthermophilic Archaea.

van der Oost J, Ciaramella M, Moracci M, Pisani FM, Rossi M, de Vos WM.

Adv Biochem Eng Biotechnol. 1998;61:87-115. Review.

PMID:
9670798
46.

Crystal structure of the beta-glycosidase from the hyperthermophilic archeon Sulfolobus solfataricus: resilience as a key factor in thermostability.

Aguilar CF, Sanderson I, Moracci M, Ciaramella M, Nucci R, Rossi M, Pearl LH.

J Mol Biol. 1997 Sep 5;271(5):789-802.

PMID:
9299327
47.

PCR amplification and cloning of metallothionein complementary DNAs in temperate and Antarctic sea urchin characterized by a large difference in egg metallothionein content.

Scudiero R, Capasso C, Carginale V, Riggio M, Capasso A, Ciaramella M, Filosa S, Parisi E.

Cell Mol Life Sci. 1997 May;53(5):472-7.

PMID:
9176568
48.

Annealing of complementary DNA strands above the melting point of the duplex promoted by an archaeal protein.

Guagliardi A, Napoli A, Rossi M, Ciaramella M.

J Mol Biol. 1997 Apr 11;267(4):841-8.

PMID:
9135116
49.
50.

Industrial-scale production and rapid purification of an archaeal beta-glycosidase expressed in Saccharomyces cerevisiae.

Morana A, Moracci M, Ottombrino A, Ciaramella M, Rossi M, De Rosa M.

Biotechnol Appl Biochem. 1995 Dec;22(3):261-8.

PMID:
8573288

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