Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 14

1.

CDeep3M-Plug-and-Play cloud-based deep learning for image segmentation.

Haberl MG, Churas C, Tindall L, Boassa D, Phan S, Bushong EA, Madany M, Akay R, Deerinck TJ, Peltier ST, Ellisman MH.

Nat Methods. 2018 Sep;15(9):677-680. doi: 10.1038/s41592-018-0106-z. Epub 2018 Aug 31.

2.

Probability Map Viewer: near real-time probability map generator of serial block electron microscopy collections.

Churas C, Perez AJ, Hakozaki H, Wong W, Lee D, Peltier ST, Ellisman MH.

Bioinformatics. 2017 Oct 1;33(19):3145-3147. doi: 10.1093/bioinformatics/btx376.

3.

Electron tomography simulator with realistic 3D phantom for evaluation of acquisition, alignment and reconstruction methods.

Wan X, Katchalski T, Churas C, Ghosh S, Phan S, Lawrence A, Hao Y, Zhou Z, Chen R, Chen Y, Zhang F, Ellisman MH.

J Struct Biol. 2017 May;198(2):103-115. doi: 10.1016/j.jsb.2017.04.002. Epub 2017 Apr 6.

4.

High-resolution human genome structure by single-molecule analysis.

Teague B, Waterman MS, Goldstein S, Potamousis K, Zhou S, Reslewic S, Sarkar D, Valouev A, Churas C, Kidd JM, Kohn S, Runnheim R, Lamers C, Forrest D, Newton MA, Eichler EE, Kent-First M, Surti U, Livny M, Schwartz DC.

Proc Natl Acad Sci U S A. 2010 Jun 15;107(24):10848-53. doi: 10.1073/pnas.0914638107. Epub 2010 Jun 1.

5.

A single molecule scaffold for the maize genome.

Zhou S, Wei F, Nguyen J, Bechner M, Potamousis K, Goldstein S, Pape L, Mehan MR, Churas C, Pasternak S, Forrest DK, Wise R, Ware D, Wing RA, Waterman MS, Livny M, Schwartz DC.

PLoS Genet. 2009 Nov;5(11):e1000711. doi: 10.1371/journal.pgen.1000711. Epub 2009 Nov 20.

6.

Lineage-specific biology revealed by a finished genome assembly of the mouse.

Church DM, Goodstadt L, Hillier LW, Zody MC, Goldstein S, She X, Bult CJ, Agarwala R, Cherry JL, DiCuccio M, Hlavina W, Kapustin Y, Meric P, Maglott D, Birtle Z, Marques AC, Graves T, Zhou S, Teague B, Potamousis K, Churas C, Place M, Herschleb J, Runnheim R, Forrest D, Amos-Landgraf J, Schwartz DC, Cheng Z, Lindblad-Toh K, Eichler EE, Ponting CP; Mouse Genome Sequencing Consortium.

PLoS Biol. 2009 May 5;7(5):e1000112. doi: 10.1371/journal.pbio.1000112. Epub 2009 May 26.

7.

Optical mapping discerns genome wide DNA methylation profiles.

Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC.

BMC Mol Biol. 2008 Jul 30;9:68. doi: 10.1186/1471-2199-9-68.

8.

Validation of rice genome sequence by optical mapping.

Zhou S, Bechner MC, Place M, Churas CP, Pape L, Leong SA, Runnheim R, Forrest DK, Goldstein S, Livny M, Schwartz DC.

BMC Genomics. 2007 Aug 15;8:278.

9.

Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Reslewic S, Zhou S, Place M, Zhang Y, Briska A, Goldstein S, Churas C, Runnheim R, Forrest D, Lim A, Lapidus A, Han CS, Roberts GP, Schwartz DC.

Appl Environ Microbiol. 2005 Sep;71(9):5511-22.

10.

Single-molecule approach to bacterial genomic comparisons via optical mapping.

Zhou S, Kile A, Bechner M, Place M, Kvikstad E, Deng W, Wei J, Severin J, Runnheim R, Churas C, Forrest D, Dimalanta ET, Lamers C, Burland V, Blattner FR, Schwartz DC.

J Bacteriol. 2004 Nov;186(22):7773-82.

11.

Shotgun optical mapping of the entire Leishmania major Friedlin genome.

Zhou S, Kile A, Kvikstad E, Bechner M, Severin J, Forrest D, Runnheim R, Churas C, Anantharaman TS, Myler P, Vogt C, Ivens A, Stuart K, Schwartz DC.

Mol Biochem Parasitol. 2004 Nov;138(1):97-106.

PMID:
15500921
12.

A microfluidic system for large DNA molecule arrays.

Dimalanta ET, Lim A, Runnheim R, Lamers C, Churas C, Forrest DK, de Pablo JJ, Graham MD, Coppersmith SN, Goldstein S, Schwartz DC.

Anal Chem. 2004 Sep 15;76(18):5293-301.

PMID:
15362885
13.

Whole-genome shotgun optical mapping of Rhodobacter sphaeroides strain 2.4.1 and its use for whole-genome shotgun sequence assembly.

Zhou S, Kvikstad E, Kile A, Severin J, Forrest D, Runnheim R, Churas C, Hickman JW, Mackenzie C, Choudhary M, Donohue T, Kaplan S, Schwartz DC.

Genome Res. 2003 Sep;13(9):2142-51.

14.

A whole-genome shotgun optical map of Yersinia pestis strain KIM.

Zhou S, Deng W, Anantharaman TS, Lim A, Dimalanta ET, Wang J, Wu T, Chunhong T, Creighton R, Kile A, Kvikstad E, Bechner M, Yen G, Garic-Stankovic A, Severin J, Forrest D, Runnheim R, Churas C, Lamers C, Perna NT, Burland V, Blattner FR, Mishra B, Schwartz DC.

Appl Environ Microbiol. 2002 Dec;68(12):6321-31.

Supplemental Content

Loading ...
Support Center