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Items: 22

1.

A chemical biology screen identifies a vulnerability of neuroendocrine cancer cells to SQLE inhibition.

Mahoney CE, Pirman D, Chubukov V, Sleger T, Hayes S, Fan ZP, Allen EL, Chen Y, Huang L, Liu M, Zhang Y, McDonald G, Narayanaswamy R, Choe S, Chen Y, Gross S, Cianchetta G, Padyana AK, Murray S, Liu W, Marks KM, Murtie J, Dorsch M, Jin S, Nagaraja N, Biller SA, Roddy T, Popovici-Muller J, Smolen GA.

Nat Commun. 2019 Jan 9;10(1):96. doi: 10.1038/s41467-018-07959-4.

2.

Improving membrane protein expression and function using genomic edits.

Jensen HM, Eng T, Chubukov V, Herbert RA, Mukhopadhyay A.

Sci Rep. 2017 Oct 12;7(1):13030. doi: 10.1038/s41598-017-12901-7.

3.

Engineering glucose metabolism of Escherichia coli under nitrogen starvation.

Chubukov V, Desmarais JJ, Wang G, Chan LJG, Baidoo EE, Petzold CJ, Keasling JD, Mukhopadhyay A.

NPJ Syst Biol Appl. 2017 Jan 5;3:16035. doi: 10.1038/npjsba.2016.35. eCollection 2017.

4.

Metabolic constraints on the evolution of antibiotic resistance.

Zampieri M, Enke T, Chubukov V, Ricci V, Piddock L, Sauer U.

Mol Syst Biol. 2017 Mar 6;13(3):917. doi: 10.15252/msb.20167028.

5.

Synthetic and systems biology for microbial production of commodity chemicals.

Chubukov V, Mukhopadhyay A, Petzold CJ, Keasling JD, Martín HG.

NPJ Syst Biol Appl. 2016 Apr 7;2:16009. doi: 10.1038/npjsba.2016.9. eCollection 2016. Review.

6.

Quantitative prediction of genome-wide resource allocation in bacteria.

Goelzer A, Muntel J, Chubukov V, Jules M, Prestel E, Nölker R, Mariadassou M, Aymerich S, Hecker M, Noirot P, Becher D, Fromion V.

Metab Eng. 2015 Nov;32:232-243. doi: 10.1016/j.ymben.2015.10.003. Epub 2015 Oct 21.

PMID:
26498510
7.

A Method to Constrain Genome-Scale Models with 13C Labeling Data.

Martín HG, Kumar VS, Weaver D, Ghosh A, Chubukov V, Mukhopadhyay A, Arkin A, Keasling JD.

PLoS Comput Biol. 2015 Sep 17;11(9):e1004363. doi: 10.1371/journal.pcbi.1004363. eCollection 2015 Sep.

8.

Acute Limonene Toxicity in Escherichia coli Is Caused by Limonene Hydroperoxide and Alleviated by a Point Mutation in Alkyl Hydroperoxidase AhpC.

Chubukov V, Mingardon F, Schackwitz W, Baidoo EE, Alonso-Gutierrez J, Hu Q, Lee TS, Keasling JD, Mukhopadhyay A.

Appl Environ Microbiol. 2015 Jul;81(14):4690-6. doi: 10.1128/AEM.01102-15. Epub 2015 May 1.

9.

Coordination of microbial metabolism.

Chubukov V, Gerosa L, Kochanowski K, Sauer U.

Nat Rev Microbiol. 2014 May;12(5):327-40. doi: 10.1038/nrmicro3238. Epub 2014 Mar 24. Review.

PMID:
24658329
10.

Environmental dependence of stationary-phase metabolism in Bacillus subtilis and Escherichia coli.

Chubukov V, Sauer U.

Appl Environ Microbiol. 2014 May;80(9):2901-9. doi: 10.1128/AEM.00061-14. Epub 2014 Feb 28.

11.

Transcriptional regulation is insufficient to explain substrate-induced flux changes in Bacillus subtilis.

Chubukov V, Uhr M, Le Chat L, Kleijn RJ, Jules M, Link H, Aymerich S, Stelling J, Sauer U.

Mol Syst Biol. 2013 Nov 26;9:709. doi: 10.1038/msb.2013.66.

12.

Somewhat in control--the role of transcription in regulating microbial metabolic fluxes.

Kochanowski K, Sauer U, Chubukov V.

Curr Opin Biotechnol. 2013 Dec;24(6):987-93. doi: 10.1016/j.copbio.2013.03.014. Epub 2013 Apr 6.

PMID:
23571096
13.

Regulatory architecture determines optimal regulation of gene expression in metabolic pathways.

Chubukov V, Zuleta IA, Li H.

Proc Natl Acad Sci U S A. 2012 Mar 27;109(13):5127-32. doi: 10.1073/pnas.1114235109. Epub 2012 Mar 13.

14.

Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways.

Chin CS, Chubukov V, Jolly ER, DeRisi J, Li H.

PLoS Biol. 2008 Jun 17;6(6):e146. doi: 10.1371/journal.pbio.0060146.

15.

Architecture and evolution of organic chemistry.

Fialkowski M, Bishop KJ, Chubukov VA, Campbell CJ, Grzybowski BA.

Angew Chem Int Ed Engl. 2005 Nov 11;44(44):7263-9. No abstract available.

PMID:
16276556
16.

Influence of denatured and intermediate states of folding on protein aggregation.

Fawzi NL, Chubukov V, Clark LA, Brown S, Head-Gordon T.

Protein Sci. 2005 Apr;14(4):993-1003. Erratum in: Protein Sci. 2005 May;14(5):1380.

17.

[Trace elements and infection].

Bondarenko VM, Chubukov VF, Bondarenko VM.

Zh Mikrobiol Epidemiol Immunobiol. 1987 Nov;(11):118-26. Review. Russian. No abstract available.

PMID:
3324581
19.

[Selection of spontaneous and induced E-mutants of bacterial viruses].

Zuev VA, Chubukov VF.

Vopr Virusol. 1967 Jan-Feb;12(1):102-4. Russian. No abstract available.

PMID:
5602529
20.

[Changes in the mutagenic action of hydroxylamine on the T-2 bacteriophage].

Chubukov VF.

Zh Mikrobiol Epidemiol Immunobiol. 1965 Jun;42(6):129-33. Russian. No abstract available.

PMID:
5869994
21.

[Induction of r- and h-c mutations in the treatment of extracellular T-2 bacteriophage with hydroxylamine and O-methylhydroxylamine].

Chubukov VF, Tatarinova SG.

Zh Mikrobiol Epidemiol Immunobiol. 1965 Apr;42(4):80-3. Russian. No abstract available.

PMID:
5887763
22.

[MUTATION OF THE HT-SIGN IN THE T-2 BACTERIOPHAGE INDUCED BY THE COMBINED ACTION OF CHEMICAL MUTAGENS].

GOLDFARB DM, CHUBUKOV VF.

Biull Eksp Biol Med. 1963 Dec;56:61-2. Russian. No abstract available.

PMID:
14149780

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