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Regulation of flowering time by SPL10/MED25 module in Arabidopsis.

Yao T, Park BS, Mao HZ, Seo JS, Ohama N, Li Y, Yu N, Mustafa NFB, Huang CH, Chua NH.

New Phytol. 2019 Oct;224(1):493-504. doi: 10.1111/nph.15954. Epub 2019 May 24.


Arabidopsis ubiquitin-specific proteases UBP12 and UBP13 shape ORE1 levels during leaf senescence induced by nitrogen deficiency.

Park SH, Jeong JS, Seo JS, Park BS, Chua NH.

New Phytol. 2019 Aug;223(3):1447-1460. doi: 10.1111/nph.15879. Epub 2019 Jun 17.


Trimolecular Fluorescence Complementation (TriFC) Assay for Visualization of RNA-Protein Interaction in Plants.

Seo JS, Chua NH.

Methods Mol Biol. 2019;1933:297-303. doi: 10.1007/978-1-4939-9045-0_19.


Analysis of Interaction Between Long Noncoding RNAs and Protein by RNA Immunoprecipitation in Arabidopsis.

Seo JS, Chua NH.

Methods Mol Biol. 2019;1933:289-295. doi: 10.1007/978-1-4939-9045-0_18.


Identification of Long Noncoding RNA-Protein Interactions Through In Vitro RNA Pull-Down Assay with Plant Nuclear Extracts.

Seo JS, Chua NH.

Methods Mol Biol. 2019;1933:279-288. doi: 10.1007/978-1-4939-9045-0_17.


Chloroplast-selective gene delivery and expression in planta using chitosan-complexed single-walled carbon nanotube carriers.

Kwak SY, Lew TTS, Sweeney CJ, Koman VB, Wong MH, Bohmert-Tatarev K, Snell KD, Seo JS, Chua NH, Strano MS.

Nat Nanotechnol. 2019 May;14(5):447-455. doi: 10.1038/s41565-019-0375-4. Epub 2019 Feb 25.


CYP79D73 Participates in Biosynthesis of Floral Scent Compound 2-Phenylethanol in Plumeria rubra.

Dhandapani S, Jin J, Sridhar V, Chua NH, Jang IC.

Plant Physiol. 2019 May;180(1):171-184. doi: 10.1104/pp.19.00098. Epub 2019 Feb 25.


Overexpression of a Transcription Factor Increases Lipid Content in a Woody Perennial Jatropha curcas.

Ye J, Wang C, Sun Y, Qu J, Mao H, Chua NH.

Front Plant Sci. 2018 Oct 22;9:1479. doi: 10.3389/fpls.2018.01479. eCollection 2018.


Arabidopsis NITROGEN LIMITATION ADAPTATION regulates ORE1 homeostasis during senescence induced by nitrogen deficiency.

Park BS, Yao T, Seo JS, Wong ECC, Mitsuda N, Huang CH, Chua NH.

Nat Plants. 2018 Nov;4(11):898-903. doi: 10.1038/s41477-018-0269-8. Epub 2018 Oct 29.


Author Correction: Transcriptome and functional analysis reveals hybrid vigor for oil biosynthesis in oil palm.

Jin J, Sun Y, Qu J, Syah R, Lim CH, Alfiko Y, Rahman NEB, Suwanto A, Yue G, Wong L, Chua NH, Ye J.

Sci Rep. 2018 Oct 25;8(1):16039. doi: 10.1038/s41598-018-23082-2.


ELF18-INDUCED LONG NONCODING RNA 1 evicts fibrillarin from mediator subunit to enhance PATHOGENESIS-RELATED GENE 1 (PR1) expression.

Seo JS, Diloknawarit P, Park BS, Chua NH.

New Phytol. 2019 Mar;221(4):2067-2079. doi: 10.1111/nph.15530. Epub 2018 Nov 10.


A noncoding RNA transcribed from the AGAMOUS (AG) second intron binds to CURLY LEAF and represses AG expression in leaves.

Wu HW, Deng S, Xu H, Mao HZ, Liu J, Niu QW, Wang H, Chua NH.

New Phytol. 2018 Sep;219(4):1480-1491. doi: 10.1111/nph.15231. Epub 2018 Jun 4.


Developing genome-wide SNPs and constructing an ultrahigh-density linkage map in oil palm.

Bai B, Wang L, Zhang YJ, Lee M, Rahmadsyah R, Alfiko Y, Ye BQ, Purwantomo S, Suwanto A, Chua NH, Yue GH.

Sci Rep. 2018 Jan 12;8(1):691. doi: 10.1038/s41598-017-18613-2.


Visualizing nuclear-localized RNA using transient expression system in plants.

Kinoshita N, Arenas-Huertero C, Chua NH.

Genes Cells. 2018 Feb;23(2):105-111. doi: 10.1111/gtc.12549. Epub 2017 Dec 22.


Comparative transcriptome analysis of oil palm flowers reveals an EAR-motif-containing R2R3-MYB that modulates phenylpropene biosynthesis.

Li R, Reddy VA, Jin J, Rajan C, Wang Q, Yue G, Lim CH, Chua NH, Ye J, Sarojam R.

BMC Plant Biol. 2017 Nov 23;17(1):219. doi: 10.1186/s12870-017-1174-4.


The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.

Henriques R, Wang H, Liu J, Boix M, Huang LF, Chua NH.

New Phytol. 2017 Nov;216(3):854-867. doi: 10.1111/nph.14703. Epub 2017 Jul 31.


Integrated metabolome and transcriptome analysis of Magnolia champaca identifies biosynthetic pathways for floral volatile organic compounds.

Dhandapani S, Jin J, Sridhar V, Sarojam R, Chua NH, Jang IC.

BMC Genomics. 2017 Jun 14;18(1):463. doi: 10.1186/s12864-017-3846-8.


Genome-wide identification of markers for selecting higher oil content in oil palm.

Bai B, Wang L, Lee M, Zhang Y, Rahmadsyah, Alfiko Y, Ye BQ, Wan ZY, Lim CH, Suwanto A, Chua NH, Yue GH.

BMC Plant Biol. 2017 May 30;17(1):93. doi: 10.1186/s12870-017-1045-z.


The Deubiquitinating Enzymes UBP12 and UBP13 Positively Regulate MYC2 Levels in Jasmonate Responses.

Jeong JS, Jung C, Seo JS, Kim JK, Chua NH.

Plant Cell. 2017 Jun;29(6):1406-1424. doi: 10.1105/tpc.17.00216. Epub 2017 May 23.


Dehydration stress extends mRNA 3' untranslated regions with noncoding RNA functions in Arabidopsis.

Sun HX, Li Y, Niu QW, Chua NH.

Genome Res. 2017 Aug;27(8):1427-1436. doi: 10.1101/gr.218669.116. Epub 2017 May 18.


ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis.

Seo JS, Sun HX, Park BS, Huang CH, Yeh SD, Jung C, Chua NH.

Plant Cell. 2017 May;29(5):1024-1038. doi: 10.1105/tpc.16.00886. Epub 2017 Apr 11.


Transcriptome and functional analysis reveals hybrid vigor for oil biosynthesis in oil palm.

Jin J, Sun Y, Qu J, Syah R, Lim CH, Alfiko Y, Rahman NEB, Suwanto A, Yue G, Wong L, Chua NH, Ye J.

Sci Rep. 2017 Mar 27;7(1):439. doi: 10.1038/s41598-017-00438-8. Erratum in: Sci Rep. 2018 Oct 25;8(1):16039.


Co-expression of peppermint geranyl diphosphate synthase small subunit enhances monoterpene production in transgenic tobacco plants.

Yin JL, Wong WS, Jang IC, Chua NH.

New Phytol. 2017 Feb;213(3):1133-1144. doi: 10.1111/nph.14280. Epub 2016 Nov 7.


Draft genome sequence of an elite Dura palm and whole-genome patterns of DNA variation in oil palm.

Jin J, Lee M, Bai B, Sun Y, Qu J, Rahmadsyah, Alfiko Y, Lim CH, Suwanto A, Sugiharti M, Wong L, Ye J, Chua NH, Yue GH.

DNA Res. 2016 Dec;23(6):527-533. Epub 2016 Jul 17.


HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.

Chhun T, Chong SY, Park BS, Wong EC, Yin JL, Kim M, Chua NH.

Plant Cell Physiol. 2016 Aug;57(8):1689-706. doi: 10.1093/pcp/pcw095. Epub 2016 May 11.


The Mediator Complex MED15 Subunit Mediates Activation of Downstream Lipid-Related Genes by the WRINKLED1 Transcription Factor.

Kim MJ, Jang IC, Chua NH.

Plant Physiol. 2016 Jul;171(3):1951-64. doi: 10.1104/pp.16.00664. Epub 2016 May 31.


CURLY LEAF Regulates Gene Sets Coordinating Seed Size and Lipid Biosynthesis.

Liu J, Deng S, Wang H, Ye J, Wu HW, Sun HX, Chua NH.

Plant Physiol. 2016 May;171(1):424-36. doi: 10.1104/pp.15.01335. Epub 2016 Mar 4.


Metabolic engineering of terpene biosynthesis in plants using a trichome-specific transcription factor MsYABBY5 from spearmint (Mentha spicata).

Wang Q, Reddy VA, Panicker D, Mao HZ, Kumar N, Rajan C, Venkatesh PN, Chua NH, Sarojam R.

Plant Biotechnol J. 2016 Jul;14(7):1619-32. doi: 10.1111/pbi.12525. Epub 2016 Feb 4.


JMJ24 targets CHROMOMETHYLASE3 for proteasomal degradation in Arabidopsis.

Deng S, Jang IC, Su L, Xu J, Chua NH.

Genes Dev. 2016 Feb 1;30(3):251-6. doi: 10.1101/gad.274647.115. Epub 2016 Jan 21.


Light-Inducible MiR163 Targets PXMT1 Transcripts to Promote Seed Germination and Primary Root Elongation in Arabidopsis.

Chung PJ, Park BS, Wang H, Liu J, Jang IC, Chua NH.

Plant Physiol. 2016 Mar;170(3):1772-82. doi: 10.1104/pp.15.01188. Epub 2016 Jan 14.


Noncoding and coding transcriptome responses of a marine diatom to phosphate fluctuations.

Cruz de Carvalho MH, Sun HX, Bowler C, Chua NH.

New Phytol. 2016 Apr;210(2):497-510. doi: 10.1111/nph.13787. Epub 2015 Dec 17.


Comparative Transcriptomics Unravel Biochemical Specialization of Leaf Tissues of Stevia for Diterpenoid Production.

Kim MJ, Jin J, Zheng J, Wong L, Chua NH, Jang IC.

Plant Physiol. 2015 Dec;169(4):2462-80. doi: 10.1104/pp.15.01353. Epub 2015 Oct 5.


Geminivirus Activates ASYMMETRIC LEAVES 2 to Accelerate Cytoplasmic DCP2-Mediated mRNA Turnover and Weakens RNA Silencing in Arabidopsis.

Ye J, Yang J, Sun Y, Zhao P, Gao S, Jung C, Qu J, Fang R, Chua NH.

PLoS Pathog. 2015 Oct 2;11(10):e1005196. doi: 10.1371/journal.ppat.1005196. eCollection 2015 Oct.


Analysis of non-coding transcriptome in rice and maize uncovers roles of conserved lncRNAs associated with agriculture traits.

Wang H, Niu QW, Wu HW, Liu J, Ye J, Yu N, Chua NH.

Plant J. 2015 Oct;84(2):404-16. doi: 10.1111/tpj.13018.


PLANT U-BOX PROTEIN10 Regulates MYC2 Stability in Arabidopsis.

Jung C, Zhao P, Seo JS, Mitsuda N, Deng S, Chua NH.

Plant Cell. 2015 Jul;27(7):2016-31. doi: 10.1105/tpc.15.00385. Epub 2015 Jul 10.


JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.

Deng S, Xu J, Liu J, Kim SH, Shi S, Chua NH.

Plant J. 2015 Sep;83(5):770-82. doi: 10.1111/tpj.12924. Epub 2015 Jul 31.


The role of miR156/SPLs modules in Arabidopsis lateral root development.

Yu N, Niu QW, Ng KH, Chua NH.

Plant J. 2015 Aug;83(4):673-85. doi: 10.1111/tpj.12919. Epub 2015 Jul 14.


Inverted-Repeat RNAs Targeting FT Intronic Regions Promote FT Expression in Arabidopsis.

Deng S, Chua NH.

Plant Cell Physiol. 2015 Aug;56(8):1667-78. doi: 10.1093/pcp/pcv091. Epub 2015 Jun 15.


The floral transcriptome of ylang ylang (Cananga odorata var. fruticosa) uncovers biosynthetic pathways for volatile organic compounds and a multifunctional and novel sesquiterpene synthase.

Jin J, Kim MJ, Dhandapani S, Tjhang JG, Yin JL, Wong L, Sarojam R, Chua NH, Jang IC.

J Exp Bot. 2015 Jul;66(13):3959-75. doi: 10.1093/jxb/erv196. Epub 2015 May 8.


A consensus linkage map of oil palm and a major QTL for stem height.

Lee M, Xia JH, Zou Z, Ye J, Rahmadsyah, Alfiko Y, Jin J, Lieando JV, Purnamasari MI, Lim CH, Suwanto A, Wong L, Chua NH, Yue GH.

Sci Rep. 2015 Feb 4;5:8232. doi: 10.1038/srep08232.


Long noncoding RNA transcriptome of plants.

Liu J, Wang H, Chua NH.

Plant Biotechnol J. 2015 Apr;13(3):319-28. doi: 10.1111/pbi.12336. Epub 2015 Jan 23. Review.


Virulence factors of geminivirus interact with MYC2 to subvert plant resistance and promote vector performance.

Li R, Weldegergis BT, Li J, Jung C, Qu J, Sun Y, Qian H, Tee C, van Loon JJ, Dicke M, Chua NH, Liu SS, Ye J.

Plant Cell. 2014 Dec;26(12):4991-5008. doi: 10.1105/tpc.114.133181. Epub 2014 Dec 9.


Next generation sequencing unravels the biosynthetic ability of spearmint (Mentha spicata) peltate glandular trichomes through comparative transcriptomics.

Jin J, Panicker D, Wang Q, Kim MJ, Liu J, Yin JL, Wong L, Jang IC, Chua NH, Sarojam R.

BMC Plant Biol. 2014 Nov 1;14:292. doi: 10.1186/s12870-014-0292-5.


Percutaneous Disc Decompression for Lumbar Radicular Pain: A Review Article.

Ong D, Chua NH, Vissers K.

Pain Pract. 2016 Jan;16(1):111-26. doi: 10.1111/papr.12250. Epub 2014 Oct 29. Review.


Engineering geminivirus resistance in Jatropha curcus.

Ye J, Qu J, Mao HZ, Ma ZG, Rahman NE, Bai C, Chen W, Jiang SY, Ramachandran S, Chua NH.

Biotechnol Biofuels. 2014 Oct 21;7(1):149. doi: 10.1186/s13068-014-0149-z. eCollection 2014.


RNAcentral: an international database of ncRNA sequences.

RNAcentral Consortium, Petrov AI, Kay SJE, Gibson R, Kulesha E, Staines D, Bruford EA, Wright MW, Burge S, Finn RD, Kersey PJ, Cochrane G, Bateman A, Griffiths-Jones S, Harrow J, Chan PP, Lowe TM, Zwieb CW, Wower J, Williams KP, Hudson CM, Gutell R, Clark MB, Dinger M, Quek XC, Bujnicki JM, Chua NH, Liu J, Wang H, Skogerbø G, Zhao Y, Chen R, Zhu W, Cole JR, Chai B, Huang HD, Huang HY, Cherry JM, Hatzigeorgiou A, Pruitt KD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D123-9. doi: 10.1093/nar/gku991. Epub 2014 Oct 28.


Big effects of small RNAs on legume root biotic interactions.

Wang H, Chua NH.

Genome Biol. 2014 Sep 24;15(9):475. doi: 10.1186/s13059-014-0475-2.


Modifying fatty acid profiles through a new cytokinin-based plastid transformation system.

Dunne A, Maple-Grødem J, Gargano D, Haslam RP, Napier JA, Chua NH, Russell R, Møller SG.

Plant J. 2014 Dec;80(6):1131-8. doi: 10.1111/tpj.12684. Epub 2014 Nov 13.


Genetic analyses of the FRNK motif function of Turnip mosaic virus uncover multiple and potentially interactive pathways of cross-protection.

Kung YJ, Lin PC, Yeh SD, Hong SF, Chua NH, Liu LY, Lin CP, Huang YH, Wu HW, Chen CC, Lin SS.

Mol Plant Microbe Interact. 2014 Sep;27(9):944-55. doi: 10.1094/MPMI-04-14-0116-R.

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