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Items: 1 to 50 of 143

1.

Maternal diet during pregnancy is related with the infant stool microbiome in a delivery mode-dependent manner.

Lundgren SN, Madan JC, Emond JA, Morrison HG, Christensen BC, Karagas MR, Hoen AG.

Microbiome. 2018 Jul 5;6(1):109. doi: 10.1186/s40168-018-0490-8.

2.

MicroRNA-related genetic variants associated with overall survival of head and neck squamous cell carcinoma.

Wilkins OM, Titus AJ, Salas LA, Gui J, Eliot M, Butler RA, Sturgis EM, Li G, Kelsey KT, Christensen BC.

Cancer Epidemiol Biomarkers Prev. 2018 Jun 7. pii: cebp.0002.2018. doi: 10.1158/1055-9965.EPI-18-0002. [Epub ahead of print]

PMID:
29880533
3.

An optimized library for reference-based deconvolution of whole-blood biospecimens assayed using the Illumina HumanMethylationEPIC BeadArray.

Salas LA, Koestler DC, Butler RA, Hansen HM, Wiencke JK, Kelsey KT, Christensen BC.

Genome Biol. 2018 May 29;19(1):64. doi: 10.1186/s13059-018-1448-7.

5.

Cell-type deconvolution from DNA methylation: a review of recent applications.

Titus AJ, Gallimore RM, Salas LA, Christensen BC.

Hum Mol Genet. 2017 Oct 1;26(R2):R216-R224. doi: 10.1093/hmg/ddx275. Review.

6.

Deconvolution of DNA methylation identifies differentially methylated gene regions on 1p36 across breast cancer subtypes.

Titus AJ, Way GP, Johnson KC, Christensen BC.

Sci Rep. 2017 Sep 14;7(1):11594. doi: 10.1038/s41598-017-10199-z.

7.

Concordance of DNA methylation profiles between breast core biopsy and surgical excision specimens containing ductal carcinoma in situ (DCIS).

Chen Y, Marotti JD, Jenson EG, Onega TL, Johnson KC, Christensen BC.

Exp Mol Pathol. 2017 Aug;103(1):78-83. doi: 10.1016/j.yexmp.2017.07.001. Epub 2017 Jul 12.

8.

Normal breast tissue DNA methylation differences at regulatory elements are associated with the cancer risk factor age.

Johnson KC, Houseman EA, King JE, Christensen BC.

Breast Cancer Res. 2017 Jul 10;19(1):81. doi: 10.1186/s13058-017-0873-y.

9.

Genome-scale identification of microRNA-related SNPs associated with risk of head and neck squamous cell carcinoma.

Wilkins OM, Titus AJ, Gui J, Eliot M, Butler RA, Sturgis EM, Li G, Kelsey KT, Christensen BC.

Carcinogenesis. 2017 Oct 1;38(10):986-993. doi: 10.1093/carcin/bgx056.

10.

Integrative epigenetic and genetic pan-cancer somatic alteration portraits.

Salas LA, Johnson KC, Koestler DC, O'Sullivan DE, Christensen BC.

Epigenetics. 2017 Jul 3;12(7):561-574. doi: 10.1080/15592294.2017.1319043. Epub 2017 Apr 20.

11.

Healthy & Empowered Youth: A Positive Youth Development Program for Native Youth.

Rushing SNC, Hildebrandt NL, Grimes CJ, Rowsell AJ, Christensen BC, Lambert WE.

Am J Prev Med. 2017 Mar;52(3S3):S263-S267. doi: 10.1016/j.amepre.2016.10.024.

12.

Immunomethylomic approach to explore the blood neutrophil lymphocyte ratio (NLR) in glioma survival.

Wiencke JK, Koestler DC, Salas LA, Wiemels JL, Roy RP, Hansen HM, Rice T, McCoy LS, Bracci PM, Molinaro AM, Kelsey KT, Wrensch MR, Christensen BC.

Clin Epigenetics. 2017 Feb 2;9:10. doi: 10.1186/s13148-017-0316-8. eCollection 2017.

13.

DNA Methylation-Derived Neutrophil-to-Lymphocyte Ratio: An Epigenetic Tool to Explore Cancer Inflammation and Outcomes.

Koestler DC, Usset J, Christensen BC, Marsit CJ, Karagas MR, Kelsey KT, Wiencke JK.

Cancer Epidemiol Biomarkers Prev. 2017 Mar;26(3):328-338. doi: 10.1158/1055-9965.EPI-16-0461. Epub 2016 Dec 13.

14.

Immune modulation associated with vascular endothelial growth factor (VEGF) blockade in patients with glioblastoma.

Thomas AA, Fisher JL, Hampton TH, Christensen BC, Tsongalis GJ, Rahme GJ, Whipple CA, Steel SE, Davis MC, Gaur AB, Lewis LD, Ernstoff MS, Fadul CE.

Cancer Immunol Immunother. 2017 Mar;66(3):379-389. doi: 10.1007/s00262-016-1941-3. Epub 2016 Dec 9.

PMID:
27942839
15.

Refractory testicular germ cell tumors are highly sensitive to the second generation DNA methylation inhibitor guadecitabine.

Albany C, Hever-Jardine MP, von Herrmann KM, Yim CY, Tam J, Warzecha JM, Shin L, Bock SE, Curran BS, Chaudhry AS, Kim F, Sandusky GE, Taverna P, Freemantle SJ, Christensen BC, Einhorn LH, Spinella MJ.

Oncotarget. 2017 Jan 10;8(2):2949-2959. doi: 10.18632/oncotarget.13811.

16.

5-Hydroxymethylcytosine localizes to enhancer elements and is associated with survival in glioblastoma patients.

Johnson KC, Houseman EA, King JE, von Herrmann KM, Fadul CE, Christensen BC.

Nat Commun. 2016 Nov 25;7:13177. doi: 10.1038/ncomms13177.

17.

A new timepiece: an epigenetic mitotic clock.

Christensen BC, Kelsey KT.

Genome Biol. 2016 Oct 19;17(1):216.

18.

Deficiency of mitochondrial modulator MCJ promotes chemoresistance in breast cancer.

Fernández-Cabezudo MJ, Faour I, Jones K, Champagne DP, Jaloudi MA, Mohamed YA, Bashir G, Almarzooqi S, Albawardi A, Hashim MJ, Roberts TS, El-Salhat H, El-Taji H, Kassis A, O'Sullivan DE, Christensen BC, DeGregori J, Al-Ramadi BK, Rincon M.

JCI Insight. 2016 May 19;1(7). pii: e86873.

19.

methyLiftover: cross-platform DNA methylation data integration.

Titus AJ, Houseman EA, Johnson KC, Christensen BC.

Bioinformatics. 2016 Aug 15;32(16):2517-9. doi: 10.1093/bioinformatics/btw180. Epub 2016 Apr 8.

20.

OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA.

Houseman EA, Johnson KC, Christensen BC.

Bioinformatics. 2016 Aug 15;32(16):2505-7. doi: 10.1093/bioinformatics/btw158. Epub 2016 Apr 19.

21.

Hydroxymethylation is uniquely distributed within term placenta, and is associated with gene expression.

Green BB, Houseman EA, Johnson KC, Guerin DJ, Armstrong DA, Christensen BC, Marsit CJ.

FASEB J. 2016 Aug;30(8):2874-84. doi: 10.1096/fj.201600310R. Epub 2016 Apr 26.

22.

Epigenetic and genetic burden measures are associated with tumor characteristics in invasive breast carcinoma.

O'Sullivan DE, Johnson KC, Skinner L, Koestler DC, Christensen BC.

Epigenetics. 2016 May 3;11(5):344-53. doi: 10.1080/15592294.2016.1168673. Epub 2016 Apr 12.

23.

Distinct Histologic Subtypes and Risk Factors for Early Onset Basal Cell Carcinoma: A Population-Based Case Control Study from New Hampshire.

Barton DT, Zens MS, Nelson HH, Christensen BC, Storm CA, Perry AE, Karagas MR.

J Invest Dermatol. 2016 Feb;136(2):533-5. doi: 10.1016/j.jid.2015.11.002. Epub 2015 Nov 18. No abstract available.

24.

Improving cell mixture deconvolution by identifying optimal DNA methylation libraries (IDOL).

Koestler DC, Jones MJ, Usset J, Christensen BC, Butler RA, Kobor MS, Wiencke JK, Kelsey KT.

BMC Bioinformatics. 2016 Mar 8;17:120. doi: 10.1186/s12859-016-0943-7.

25.

Prospective Study of Human Polyomaviruses and Risk of Cutaneous Squamous Cell Carcinoma in the United States.

Gossai A, Waterboer T, Nelson HH, Doherty JA, Michel A, Willhauck-Fleckenstein M, Farzan SF, Christensen BC, Hoen AG, Perry AE, Pawlita M, Karagas MR.

Cancer Epidemiol Biomarkers Prev. 2016 May;25(5):736-44. doi: 10.1158/1055-9965.EPI-15-1111. Epub 2016 Feb 11.

26.

Human polyomaviruses and incidence of cutaneous squamous cell carcinoma in the New Hampshire skin cancer study.

Gossai A, Waterboer T, Hoen AG, Farzan SF, Nelson HH, Michel A, Willhauck-Fleckenstein M, Christensen BC, Perry AE, Pawlita M, Karagas MR.

Cancer Med. 2016 Jun;5(6):1239-50. doi: 10.1002/cam4.674. Epub 2016 Feb 21.

27.

Identification of cis- and trans-acting elements regulating calretinin expression in mesothelioma cells.

Kresoja-Rakic J, Kapaklikaya E, Ziltener G, Dalcher D, Santoro R, Christensen BC, Johnson KC, Schwaller B, Weder W, Stahel RA, Felley-Bosco E.

Oncotarget. 2016 Apr 19;7(16):21272-86. doi: 10.18632/oncotarget.7114.

28.

Skin Cancer Risk Is Modified by KIR/HLA Interactions That Influence the Activation of Natural Killer Immune Cells.

Vineretsky KA, Karagas MR, Christensen BC, Kuriger-Laber JK, Perry AE, Storm CA, Nelson HH.

Cancer Res. 2016 Jan 15;76(2):370-6. doi: 10.1158/0008-5472.CAN-15-0547. Epub 2016 Jan 7.

29.

Seroepidemiology of Human Polyomaviruses in a US Population.

Gossai A, Waterboer T, Nelson HH, Michel A, Willhauck-Fleckenstein M, Farzan SF, Hoen AG, Christensen BC, Kelsey KT, Marsit CJ, Pawlita M, Karagas MR.

Am J Epidemiol. 2016 Jan 1;183(1):61-9. doi: 10.1093/aje/kwv155. Epub 2015 Dec 13.

30.

DNA methylation in ductal carcinoma in situ related with future development of invasive breast cancer.

Johnson KC, Koestler DC, Fleischer T, Chen P, Jenson EG, Marotti JD, Onega T, Kristensen VN, Christensen BC.

Clin Epigenetics. 2015 Jul 25;7:75. doi: 10.1186/s13148-015-0094-0. eCollection 2015.

31.

A coding variant in TMC8 (EVER2) is associated with high risk HPV infection and head and neck cancer risk.

Liang C, Kelsey KT, McClean MD, Christensen BC, Marsit CJ, Karagas MR, Waterboer T, Pawlita M, Nelson HH.

PLoS One. 2015 Apr 8;10(4):e0123716. doi: 10.1371/journal.pone.0123716. eCollection 2015.

32.

A recursively partitioned mixture model for clustering time-course gene expression data.

Koestler DC, Marsit CJ, Christensen BC, Kelsey KT, Houseman EA.

Transl Cancer Res. 2014;3(3):217-232.

33.

Genome-wide DNA methylation profiles in progression to in situ and invasive carcinoma of the breast with impact on gene transcription and prognosis.

Fleischer T, Frigessi A, Johnson KC, Edvardsen H, Touleimat N, Klajic J, Riis ML, Haakensen VD, Wärnberg F, Naume B, Helland A, Børresen-Dale AL, Tost J, Christensen BC, Kristensen VN.

Genome Biol. 2014;15(8):435. doi: 10.1186/PREACCEPT-2333349012841587. Epub 2014 Aug 22.

34.

Let-7 microRNA-binding-site polymorphism in the 3'UTR of KRAS and colorectal cancer outcome: a systematic review and meta-analysis.

Langevin SM, Christensen BC.

Cancer Med. 2014 Oct;3(5):1385-95. doi: 10.1002/cam4.279. Epub 2014 Jun 2. Review.

35.

RNASEL and MIR146A SNP-SNP interaction as a susceptibility factor for non-melanoma skin cancer.

Farzan SF, Karagas MR, Christensen BC, Li Z, Kuriger JK, Nelson HH; New Hampshire Skin Cancer Study.

PLoS One. 2014 Apr 3;9(4):e93602. doi: 10.1371/journal.pone.0093602. eCollection 2014.

36.

Leukocyte-adjusted epigenome-wide association studies of blood from solid tumor patients.

Langevin SM, Houseman EA, Accomando WP, Koestler DC, Christensen BC, Nelson HH, Karagas MR, Marsit CJ, Wiencke JK, Kelsey KT.

Epigenetics. 2014 Jun;9(6):884-95. doi: 10.4161/epi.28575. Epub 2014 Mar 26.

37.

Epigenetic silencing of Na,K-ATPase β 1 subunit gene ATP1B1 by methylation in clear cell renal cell carcinoma.

Selvakumar P, Owens TA, David JM, Petrelli NJ, Christensen BC, Lakshmikuttyamma A, Rajasekaran AK.

Epigenetics. 2014 Apr;9(4):579-86. doi: 10.4161/epi.27795. Epub 2014 Jan 22.

38.

Effect of estrogen receptor α binding on functional DNA methylation in breast cancer.

Ung M, Ma X, Johnson KC, Christensen BC, Cheng C.

Epigenetics. 2014 Apr;9(4):523-32. doi: 10.4161/epi.27688. Epub 2014 Jan 16.

39.

Age-related DNA methylation in normal breast tissue and its relationship with invasive breast tumor methylation.

Johnson KC, Koestler DC, Cheng C, Christensen BC.

Epigenetics. 2014 Feb;9(2):268-75. doi: 10.4161/epi.27015. Epub 2013 Nov 6.

40.

Pro-apoptotic TP53 homolog TAp63 is repressed via epigenetic silencing and B-cell receptor signalling in chronic lymphocytic leukaemia.

Humphries LA, Godbersen JC, Danilova OV, Kaur P, Christensen BC, Danilov AV.

Br J Haematol. 2013 Dec;163(5):590-602. doi: 10.1111/bjh.12580. Epub 2013 Sep 30.

41.

Review of processing and analysis methods for DNA methylation array data.

Wilhelm-Benartzi CS, Koestler DC, Karagas MR, Flanagan JM, Christensen BC, Kelsey KT, Marsit CJ, Houseman EA, Brown R.

Br J Cancer. 2013 Sep 17;109(6):1394-402. doi: 10.1038/bjc.2013.496. Epub 2013 Aug 27. Review.

42.

Gastric reflux is an independent risk factor for laryngopharyngeal carcinoma.

Langevin SM, Michaud DS, Marsit CJ, Nelson HH, Birnbaum AE, Eliot M, Christensen BC, McClean MD, Kelsey KT.

Cancer Epidemiol Biomarkers Prev. 2013 Jun;22(6):1061-8. doi: 10.1158/1055-9965.EPI-13-0183. Epub 2013 May 23.

43.

Recursively partitioned mixture model clustering of DNA methylation data using biologically informed correlation structures.

Koestler DC, Christensen BC, Marsit CJ, Kelsey KT, Houseman EA.

Stat Appl Genet Mol Biol. 2013 Mar 5;12(2):225-40. doi: 10.1515/sagmb-2012-0068.

44.

Acute hypersensitivity of pluripotent testicular cancer-derived embryonal carcinoma to low-dose 5-aza deoxycytidine is associated with global DNA Damage-associated p53 activation, anti-pluripotency and DNA demethylation.

Biswal BK, Beyrouthy MJ, Hever-Jardine MP, Armstrong D, Tomlinson CR, Christensen BC, Marsit CJ, Spinella MJ.

PLoS One. 2012;7(12):e53003. doi: 10.1371/journal.pone.0053003. Epub 2012 Dec 27.

45.

Epigenetic biomarkers of T-cells in human glioma.

Wiencke JK, Accomando WP, Zheng S, Patoka J, Dou X, Phillips JJ, Hsuang G, Christensen BC, Houseman EA, Koestler DC, Bracci P, Wiemels JL, Wrensch M, Nelson HH, Kelsey KT.

Epigenetics. 2012 Dec 1;7(12):1391-402. doi: 10.4161/epi.22675. Epub 2012 Oct 29.

46.

Biomarkers of HPV in head and neck squamous cell carcinoma.

Liang C, Marsit CJ, McClean MD, Nelson HH, Christensen BC, Haddad RI, Clark JR, Wein RO, Grillone GA, Houseman EA, Halec G, Waterboer T, Pawlita M, Krane JF, Kelsey KT.

Cancer Res. 2012 Oct 1;72(19):5004-13. doi: 10.1158/0008-5472.CAN-11-3277. Epub 2012 Sep 18.

47.

Peripheral blood immune cell methylation profiles are associated with nonhematopoietic cancers.

Koestler DC, Marsit CJ, Christensen BC, Accomando W, Langevin SM, Houseman EA, Nelson HH, Karagas MR, Wiencke JK, Kelsey KT.

Cancer Epidemiol Biomarkers Prev. 2012 Aug;21(8):1293-302. doi: 10.1158/1055-9965.EPI-12-0361. Epub 2012 Jun 19.

48.

Allergies and risk of head and neck cancer.

Michaud DS, Langevin SM, Eliot M, Nelson HH, McClean MD, Christensen BC, Marsit CJ, Kelsey KT.

Cancer Causes Control. 2012 Aug;23(8):1317-22. doi: 10.1007/s10552-012-0009-8. Epub 2012 Jun 19.

49.

DNA methylation arrays as surrogate measures of cell mixture distribution.

Houseman EA, Accomando WP, Koestler DC, Christensen BC, Marsit CJ, Nelson HH, Wiencke JK, Kelsey KT.

BMC Bioinformatics. 2012 May 8;13:86. doi: 10.1186/1471-2105-13-86.

50.

Key epigenetic changes associated with lung cancer development: results from dense methylation array profiling.

Nelson HH, Marsit CJ, Christensen BC, Houseman EA, Kontic M, Wiemels JL, Karagas MR, Wrensch MR, Zheng S, Wiencke JK, Kelsey KT.

Epigenetics. 2012 Jun 1;7(6):559-66. doi: 10.4161/epi.20219. Epub 2012 Jun 1.

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