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High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labelling in a Nanodroplet Sample Preparation Platform.

Dou M, Clair G, Tsai CF, Xu K, Chrisler WB, Sontag RL, Zhao R, Moore RJ, Liu T, Paša-Tolić L, Smith RD, Shi T, Adkins JN, Qian WJ, Kelly RT, Ansong C, Zhu Y.

Anal Chem. 2019 Sep 11. doi: 10.1021/acs.analchem.9b03349. [Epub ahead of print]


Stable Acinar Progenitor Cell Model Identifies Treacle-Dependent Radioresistance.

Weber TJ, Qian WJ, Smith JN, Gritsenko MA, Hu D, Chrisler WB, Timchalk C.

Radiat Res. 2019 Aug;192(2):135-144. doi: 10.1667/RR15342.1. Epub 2019 May 29.


Forfeiting the priority effect: turnover defines biofilm community succession.

Brislawn CJ, Graham EB, Dana K, Ihardt P, Fansler SJ, Chrisler WB, Cliff JB, Stegen JC, Moran JJ, Bernstein HC.

ISME J. 2019 Jul;13(7):1865-1877. doi: 10.1038/s41396-019-0396-x. Epub 2019 Mar 18.


Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.

Zhang P, Gaffrey MJ, Zhu Y, Chrisler WB, Fillmore TL, Yi L, Nicora CD, Zhang T, Wu H, Jacobs J, Tang K, Kagan J, Srivastava S, Rodland KD, Qian WJ, Smith RD, Liu T, Wiley HS, Shi T.

Anal Chem. 2019 Jan 15;91(2):1441-1451. doi: 10.1021/acs.analchem.8b04258. Epub 2018 Dec 28.


Impact of lithiated cobalt oxide and phosphate nanoparticles on rainbow trout gill epithelial cells.

Melby ES, Cui Y, Borgatta J, Mensch AC, Hang MN, Chrisler WB, Dohnalkova A, Van Gilder JM, Alvarez CM, Smith JN, Hamers RJ, Orr G.

Nanotoxicology. 2018 Dec;12(10):1166-1181. doi: 10.1080/17435390.2018.1508785. Epub 2018 Nov 19.


Evaluation of non-invasive biomonitoring of 2,4-Dichlorophenoxyacetic acid (2,4-D) in saliva.

Carver ZA, Han AA, Timchalk C, Weber TJ, Tyrrell KJ, Sontag RL, Luders T, Chrisler WB, Weitz KK, Smith JN.

Toxicology. 2018 Dec 1;410:171-181. doi: 10.1016/j.tox.2018.08.003. Epub 2018 Aug 16.


Spatially Resolved Proteome Profiling of <200 Cells from Tomato Fruit Pericarp by Integrating Laser-Capture Microdissection with Nanodroplet Sample Preparation.

Liang Y, Zhu Y, Dou M, Xu K, Chu RK, Chrisler WB, Zhao R, Hixson KK, Kelly RT.

Anal Chem. 2018 Sep 18;90(18):11106-11114. doi: 10.1021/acs.analchem.8b03005. Epub 2018 Aug 30.


Spatially Resolved Proteome Mapping of Laser Capture Microdissected Tissue with Automated Sample Transfer to Nanodroplets.

Zhu Y, Dou M, Piehowski PD, Liang Y, Wang F, Chu RK, Chrisler WB, Smith JN, Schwarz KC, Shen Y, Shukla AK, Moore RJ, Smith RD, Qian WJ, Kelly RT.

Mol Cell Proteomics. 2018 Sep;17(9):1864-1874. doi: 10.1074/mcp.TIR118.000686. Epub 2018 Jun 24.


Proteomic Analysis of Single Mammalian Cells Enabled by Microfluidic Nanodroplet Sample Preparation and Ultrasensitive NanoLC-MS.

Zhu Y, Clair G, Chrisler WB, Shen Y, Zhao R, Shukla AK, Moore RJ, Misra RS, Pryhuber GS, Smith RD, Ansong C, Kelly RT.

Angew Chem Int Ed Engl. 2018 Sep 17;57(38):12370-12374. doi: 10.1002/anie.201802843. Epub 2018 Jun 14.


Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Mar 7;9(1):1034. doi: 10.1038/s41467-018-03572-7.


Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology.

Stegen JC, Johnson T, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Fansler SJ, Graham EB, Kennedy DW, Resch CT, Tfaily M, Zachara J.

Nat Commun. 2018 Feb 8;9(1):585. doi: 10.1038/s41467-018-02922-9. Erratum in: Nat Commun. 2018 Mar 7;9(1):1034.


Phenotypic responses to interspecies competition and commensalism in a naturally-derived microbial co-culture.

Khan N, Maezato Y, McClure RS, Brislawn CJ, Mobberley JM, Isern N, Chrisler WB, Markillie LM, Barney BM, Song HS, Nelson WC, Bernstein HC.

Sci Rep. 2018 Jan 10;8(1):297. doi: 10.1038/s41598-017-18630-1.


Fluctuation localization imaging-based fluorescence in situ hybridization (fliFISH) for accurate detection and counting of RNA copies in single cells.

Cui Y, Hu D, Markillie LM, Chrisler WB, Gaffrey MJ, Ansong C, Sussel L, Orr G.

Nucleic Acids Res. 2018 Jan 25;46(2):e7. doi: 10.1093/nar/gkx874.


High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Kowalczyk JE, Khosravi C, Purvine S, Dohnalkova A, Chrisler WB, Orr G, Robinson E, Zink E, Wiebenga A, Peng M, Battaglia E, Baker S, de Vries RP.

Environ Microbiol. 2017 Nov;19(11):4587-4598. doi: 10.1111/1462-2920.13923. Epub 2017 Oct 20.


Predicting Species-Resolved Macronutrient Acquisition during Succession in a Model Phototrophic Biofilm Using an Integrated 'Omics Approach.

Lindemann SR, Mobberley JM, Cole JK, Markillie LM, Taylor RC, Huang E, Chrisler WB, Wiley HS, Lipton MS, Nelson WC, Fredrickson JK, Romine MF.

Front Microbiol. 2017 Jun 13;8:1020. doi: 10.3389/fmicb.2017.01020. eCollection 2017.


In situ nuclear magnetic resonance microimaging of live biofilms in a microchannel.

Renslow RS, Marshall MJ, Tucker AE, Chrisler WB, Yu XY.

Analyst. 2017 Jun 26;142(13):2363-2371. doi: 10.1039/c7an00078b.


Indirect Interspecies Regulation: Transcriptional and Physiological Responses of a Cyanobacterium to Heterotrophic Partnership.

Bernstein HC, McClure RS, Thiel V, Sadler NC, Kim YM, Chrisler WB, Hill EA, Bryant DA, Romine MF, Jansson JK, Fredrickson JK, Beliaev AS.

mSystems. 2017 Mar 7;2(2). pii: e00181-16. doi: 10.1128/mSystems.00181-16. eCollection 2017 Mar-Apr.


Structural reorganization of the fungal endoplasmic reticulum upon induction of mycotoxin biosynthesis.

Boenisch MJ, Broz KL, Purvine SO, Chrisler WB, Nicora CD, Connolly LR, Freitag M, Baker SE, Kistler HC.

Sci Rep. 2017 Mar 13;7:44296. doi: 10.1038/srep44296.


Phycobilisome truncation causes widespread proteome changes in Synechocystis sp. PCC 6803.

Liberton M, Chrisler WB, Nicora CD, Moore RJ, Smith RD, Koppenaal DW, Pakrasi HB, Jacobs JM.

PLoS One. 2017 Mar 2;12(3):e0173251. doi: 10.1371/journal.pone.0173251. eCollection 2017.


A flexible microbial co-culture platform for simultaneous utilization of methane and carbon dioxide from gas feedstocks.

Hill EA, Chrisler WB, Beliaev AS, Bernstein HC.

Bioresour Technol. 2017 Mar;228:250-256. doi: 10.1016/j.biortech.2016.12.111. Epub 2017 Jan 3.


Cells Respond to Distinct Nanoparticle Properties with Multiple Strategies As Revealed by Single-Cell RNA-Seq.

Mitchell HD, Markillie LM, Chrisler WB, Gaffrey MJ, Hu D, Szymanski CJ, Xie Y, Melby ES, Dohnalkova A, Taylor RC, Grate EK, Cooley SK, McDermott JE, Heredia-Langner A, Orr G.

ACS Nano. 2016 Nov 22;10(11):10173-10185. Epub 2016 Oct 31.


Unlocking the Constraints of Cyanobacterial Productivity: Acclimations Enabling Ultrafast Growth.

Bernstein HC, McClure RS, Hill EA, Markillie LM, Chrisler WB, Romine MF, McDermott JE, Posewitz MC, Bryant DA, Konopka AE, Fredrickson JK, Beliaev AS.

MBio. 2016 Jul 26;7(4). pii: e00949-16. doi: 10.1128/mBio.00949-16.


Conservation of protein abundance patterns reveals the regulatory architecture of the EGFR-MAPK pathway.

Shi T, Niepel M, McDermott JE, Gao Y, Nicora CD, Chrisler WB, Markillie LM, Petyuk VA, Smith RD, Rodland KD, Sorger PK, Qian WJ, Wiley HS.

Sci Signal. 2016 Jul 12;9(436):rs6. doi: 10.1126/scisignal.aaf0891.


Groundwater-surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover.

Stegen JC, Fredrickson JK, Wilkins MJ, Konopka AE, Nelson WC, Arntzen EV, Chrisler WB, Chu RK, Danczak RE, Fansler SJ, Kennedy DW, Resch CT, Tfaily M.

Nat Commun. 2016 Apr 7;7:11237. doi: 10.1038/ncomms11237.


Lipopolysaccharide Density and Structure Govern the Extent and Distance of Nanoparticle Interaction with Actual and Model Bacterial Outer Membranes.

Jacobson KH, Gunsolus IL, Kuech TR, Troiano JM, Melby ES, Lohse SE, Hu D, Chrisler WB, Murphy CJ, Orr G, Geiger FM, Haynes CL, Pedersen JA.

Environ Sci Technol. 2015 Sep 1;49(17):10642-50. doi: 10.1021/acs.est.5b01841. Epub 2015 Aug 12.


The effect of low dose ionizing radiation on homeostasis and functional integrity in an organotypic human skin model.

von Neubeck C, Geniza MJ, Kauer PM, Robinson RJ, Chrisler WB, Sowa MB.

Mutat Res. 2015 May;775:10-8. doi: 10.1016/j.mrfmmm.2015.03.003. Epub 2015 Mar 16.


Sensitive targeted quantification of ERK phosphorylation dynamics and stoichiometry in human cells without affinity enrichment.

Shi T, Gao Y, Gaffrey MJ, Nicora CD, Fillmore TL, Chrisler WB, Gritsenko MA, Wu C, He J, Bloodsworth KJ, Zhao R, Camp DG 2nd, Liu T, Rodland KD, Smith RD, Wiley HS, Qian WJ.

Anal Chem. 2015 Jan 20;87(2):1103-10. doi: 10.1021/ac503797x. Epub 2014 Dec 31.


Inference of interactions in cyanobacterial-heterotrophic co-cultures via transcriptome sequencing.

Beliaev AS, Romine MF, Serres M, Bernstein HC, Linggi BE, Markillie LM, Isern NG, Chrisler WB, Kucek LA, Hill EA, Pinchuk GE, Bryant DA, Wiley HS, Fredrickson JK, Konopka A.

ISME J. 2014 Nov;8(11):2243-55. doi: 10.1038/ismej.2014.69. Epub 2014 Apr 29.


Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions.

Cole JK, Hutchison JR, Renslow RS, Kim YM, Chrisler WB, Engelmann HE, Dohnalkova AC, Hu D, Metz TO, Fredrickson JK, Lindemann SR.

Front Microbiol. 2014 Apr 7;5:109. doi: 10.3389/fmicb.2014.00109. eCollection 2014.


In situ molecular imaging of a hydrated biofilm in a microfluidic reactor by ToF-SIMS.

Hua X, Yu XY, Wang Z, Yang L, Liu B, Zhu Z, Tucker AE, Chrisler WB, Hill EA, Thevuthasan T, Lin Y, Liu S, Marshall MJ.

Analyst. 2014 Apr 7;139(7):1609-13. doi: 10.1039/c3an02262e.


Organelle-specific activity-based protein profiling in living cells.

Wiedner SD, Anderson LN, Sadler NC, Chrisler WB, Kodali VK, Smith RD, Wright AT.

Angew Chem Int Ed Engl. 2014 Mar 10;53(11):2919-22. doi: 10.1002/anie.201309135. Epub 2014 Feb 6.


Intracellular accumulation dynamics and fate of zinc ions in alveolar epithelial cells exposed to airborne ZnO nanoparticles at the air-liquid interface.

Mihai C, Chrisler WB, Xie Y, Hu D, Szymanski CJ, Tolic A, Klein JA, Smith JN, Tarasevich BJ, Orr G.

Nanotoxicology. 2015 Feb;9(1):9-22. doi: 10.3109/17435390.2013.859319. Epub 2013 Dec 2.


Live cell chemical profiling of temporal redox dynamics in a photoautotrophic cyanobacterium.

Sadler NC, Melnicki MR, Serres MH, Merkley ED, Chrisler WB, Hill EA, Romine MF, Kim S, Zink EM, Datta S, Smith RD, Beliaev AS, Konopka A, Wright AT.

ACS Chem Biol. 2014 Jan 17;9(1):291-300. doi: 10.1021/cb400769v. Epub 2013 Nov 6.


Analysis of carbohydrate storage granules in the diazotrophic cyanobacterium Cyanothece sp. PCC 7822.

Welkie DG, Sherman DM, Chrisler WB, Orr G, Sherman LA.

Photosynth Res. 2013 Nov;118(1-2):25-36. doi: 10.1007/s11120-013-9941-z. Epub 2013 Oct 19.


Integrated experimental and computational approach to understand the effects of heavy ion radiation on skin homeostasis.

von Neubeck C, Shankaran H, Geniza MJ, Kauer PM, Robinson RJ, Chrisler WB, Sowa MB.

Integr Biol (Camb). 2013 Oct;5(10):1229-43. doi: 10.1039/c3ib40071a.


Annexin A2 modulates radiation-sensitive transcriptional programming and cell fate.

Waters KM, Stenoien DL, Sowa MB, von Neubeck C, Chrisler WB, Tan R, Sontag RL, Weber TJ.

Radiat Res. 2013 Jan;179(1):53-61. doi: 10.1667/RR3056.1. Epub 2012 Nov 13.


Integrated experimental and model-based analysis reveals the spatial aspects of EGFR activation dynamics.

Shankaran H, Zhang Y, Chrisler WB, Ewald JA, Wiley HS, Resat H.

Mol Biosyst. 2012 Nov;8(11):2868-82. doi: 10.1039/c2mb25190f. Epub 2012 Sep 5.


Cell type-dependent gene transcription profile in a three-dimensional human skin tissue model exposed to low doses of ionizing radiation: implications for medical exposures.

von Neubeck C, Shankaran H, Karin NJ, Kauer PM, Chrisler WB, Wang X, Robinson RJ, Waters KM, Tilton SC, Sowa MB.

Environ Mol Mutagen. 2012 May;53(4):247-59. doi: 10.1002/em.21682. Epub 2012 Feb 20.


Delivery of MicroRNA-10b with Polylysine Nanoparticles for Inhibition of Breast Cancer Cell Wound Healing.

Jin H, Yu Y, Chrisler WB, Xiong Y, Hu D, Lei C.

Breast Cancer (Auckl). 2012;6:9-19. doi: 10.4137/BCBCR.S8513. Epub 2011 Dec 7.


Aerosolized ZnO nanoparticles induce toxicity in alveolar type II epithelial cells at the air-liquid interface.

Xie Y, Williams NG, Tolic A, Chrisler WB, Teeguarden JG, Maddux BL, Pounds JG, Laskin A, Orr G.

Toxicol Sci. 2012 Feb;125(2):450-61. doi: 10.1093/toxsci/kfr251. Epub 2011 Sep 28.


Confocal microscopy for modeling electron microbeam irradiation of skin.

Miller JH, Chrisler WB, Wang X, Sowa MB.

Radiat Environ Biophys. 2011 Aug;50(3):365-9. doi: 10.1007/s00411-011-0371-z. Epub 2011 May 21.


Inhibition of ERK oscillations by ionizing radiation and reactive oxygen species.

Shankaran H, Chrisler WB, Sontag RL, Weber TJ.

Mol Carcinog. 2011 Jun;50(6):424-32. doi: 10.1002/mc.20724. Epub 2010 Dec 28.


Simulation of electron-beam irradiation of skin tissue model.

Miller JH, Suleiman A, Chrisler WB, Sowa MB.

Radiat Res. 2011 Jan;175(1):113-8. doi: 10.1667/RR2339.1. Epub 2010 Nov 10.


ISDD: A computational model of particle sedimentation, diffusion and target cell dosimetry for in vitro toxicity studies.

Hinderliter PM, Minard KR, Orr G, Chrisler WB, Thrall BD, Pounds JG, Teeguarden JG.

Part Fibre Toxicol. 2010 Nov 30;7(1):36. doi: 10.1186/1743-8977-7-36.


Cellular recognition and trafficking of amorphous silica nanoparticles by macrophage scavenger receptor A.

Orr GA, Chrisler WB, Cassens KJ, Tan R, Tarasevich BJ, Markillie LM, Zangar RC, Thrall BD.

Nanotoxicology. 2011 Sep;5(3):296-311. doi: 10.3109/17435390.2010.513836. Epub 2010 Sep 17.


Three-dimensional culture conditions lead to decreased radiation induced cytotoxicity in human mammary epithelial cells.

Sowa MB, Chrisler WB, Zens KD, Ashjian EJ, Opresko LK.

Mutat Res. 2010 May 1;687(1-2):78-83. doi: 10.1016/j.mrfmmm.2010.03.004. Epub 2010 Mar 6.


Basic fibroblast growth factor regulates persistent ERK oscillations in premalignant but not malignant JB6 cells.

Weber TJ, Shankaran H, Wiley HS, Opresko LK, Chrisler WB, Quesenberry RD.

J Invest Dermatol. 2010 May;130(5):1444-56. doi: 10.1038/jid.2009.383. Epub 2009 Dec 17.


Rapid and sustained nuclear-cytoplasmic ERK oscillations induced by epidermal growth factor.

Shankaran H, Ippolito DL, Chrisler WB, Resat H, Bollinger N, Opresko LK, Wiley HS.

Mol Syst Biol. 2009;5:332. doi: 10.1038/msb.2009.90. Epub 2009 Dec 1.


HER/ErbB receptor interactions and signaling patterns in human mammary epithelial cells.

Zhang Y, Opresko L, Shankaran H, Chrisler WB, Wiley HS, Resat H.

BMC Cell Biol. 2009 Oct 31;10:78. doi: 10.1186/1471-2121-10-78.


Cellular dichotomy between anchorage-independent growth responses to bFGF and TPA reflects molecular switch in commitment to carcinogenesis.

Waters KM, Tan R, Opresko LK, Quesenberry RD, Bandyopadhyay S, Chrisler WB, Weber TJ.

Mol Carcinog. 2009 Nov;48(11):1059-69. doi: 10.1002/mc.20558.


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