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Items: 20


Hypoxia drives cardiac miRNAs and inflammation in the right and left ventricle.

Chouvarine P, Legchenko E, Geldner J, Riehle C, Hansmann G.

J Mol Med (Berl). 2019 Oct;97(10):1427-1438. doi: 10.1007/s00109-019-01817-6. Epub 2019 Jul 23.


Chronic TGF-β1 Signaling in Pulmonary Arterial Hypertension Induces Sustained Canonical Smad3 Pathways in Vascular Smooth Muscle Cells.

Calvier L, Chouvarine P, Legchenko E, Kokeny G, Mozes MM, Hansmann G.

Am J Respir Cell Mol Biol. 2019 Jul;61(1):121-123. doi: 10.1165/rcmb.2018-0275LE. No abstract available.


PPARγ agonist pioglitazone reverses pulmonary hypertension and prevents right heart failure via fatty acid oxidation.

Legchenko E, Chouvarine P, Borchert P, Fernandez-Gonzalez A, Snay E, Meier M, Maegel L, Mitsialis SA, Rog-Zielinska EA, Kourembanas S, Jonigk D, Hansmann G.

Sci Transl Med. 2018 Apr 25;10(438). pii: eaao0303. doi: 10.1126/scitranslmed.aao0303.


Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis.

Perera D, Magbanua ZV, Thummasuwan S, Mukherjee D, Arick M 2nd, Chouvarine P, Nairn CJ, Schmutz J, Grimwood J, Dean JFD, Peterson DG.

Gene. 2018 Jul 15;663:165-177. doi: 10.1016/j.gene.2018.04.024. Epub 2018 Apr 12.


Transforming Growth Factor β1- and Bone Morphogenetic Protein 2/PPARγ-regulated MicroRNAs in Pulmonary Arterial Hypertension.

Calvier L, Chouvarine P, Legchenko E, Hansmann G.

Am J Respir Crit Care Med. 2017 Nov 1;196(9):1227-1228. doi: 10.1164/rccm.201705-0923LE. No abstract available.


PPARγ Links BMP2 and TGFβ1 Pathways in Vascular Smooth Muscle Cells, Regulating Cell Proliferation and Glucose Metabolism.

Calvier L, Chouvarine P, Legchenko E, Hoffmann N, Geldner J, Borchert P, Jonigk D, Mozes MM, Hansmann G.

Cell Metab. 2017 May 2;25(5):1118-1134.e7. doi: 10.1016/j.cmet.2017.03.011.


Three-base periodicity of sites of sequence variation in Pseudomonas aeruginosa and Staphylococcus aureus core genomes.

Morán Losada P, Fischer S, Chouvarine P, Tümmler B.

FEBS Lett. 2016 Oct;590(20):3538-3543. doi: 10.1002/1873-3468.12431. Epub 2016 Oct 4.


Filtration and Normalization of Sequencing Read Data in Whole-Metagenome Shotgun Samples.

Chouvarine P, Wiehlmann L, Moran Losada P, DeLuca DS, Tümmler B.

PLoS One. 2016 Oct 19;11(10):e0165015. doi: 10.1371/journal.pone.0165015. eCollection 2016.


The cystic fibrosis lower airways microbial metagenome.

Moran Losada P, Chouvarine P, Dorda M, Hedtfeld S, Mielke S, Schulz A, Wiehlmann L, Tümmler B.

ERJ Open Res. 2016 May 9;2(2). pii: 00096-2015. eCollection 2016 Apr.


Intraclonal genome diversity of the major Pseudomonas aeruginosa clones C and PA14.

Fischer S, Klockgether J, Morán Losada P, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Dorda M, Goesmann A, Hilker R, Mielke S, Schönfelder T, Suerbaum S, Türk O, Woltemate S, Wiehlmann L, Tümmler B.

Environ Microbiol Rep. 2016 Apr;8(2):227-34. doi: 10.1111/1758-2229.12372. Epub 2016 Jan 28.


Transcriptomic dissection of the rice-Burkholderia glumae interaction.

Magbanua ZV, Arick M 2nd, Buza T, Hsu CY, Showmaker KC, Chouvarine P, Deng P, Peterson DG, Lu S.

BMC Genomics. 2014 Sep 3;15:755. doi: 10.1186/1471-2164-15-755.


Interclonal gradient of virulence in the Pseudomonas aeruginosa pangenome from disease and environment.

Hilker R, Munder A, Klockgether J, Losada PM, Chouvarine P, Cramer N, Davenport CF, Dethlefsen S, Fischer S, Peng H, Schönfelder T, Türk O, Wiehlmann L, Wölbeling F, Gulbins E, Goesmann A, Tümmler B.

Environ Microbiol. 2015 Jan;17(1):29-46. doi: 10.1111/1462-2920.12606. Epub 2014 Sep 29.


The extensive set of accessory Pseudomonas aeruginosa genomic components.

Pohl S, Klockgether J, Eckweiler D, Khaledi A, Schniederjans M, Chouvarine P, Tümmler B, Häussler S.

FEMS Microbiol Lett. 2014 Jul;356(2):235-41. doi: 10.1111/1574-6968.12445. Epub 2014 May 12.


Developing a biocuration workflow for AgBase, a non-model organism database.

Pillai L, Chouvarine P, Tudor CO, Schmidt CJ, Vijay-Shanker K, McCarthy FM.

Database (Oxford). 2012 Nov 17;2012:bas038. doi: 10.1093/database/bas038. Print 2012.


Transcriptome-based differentiation of closely-related Miscanthus lines.

Chouvarine P, Cooksey AM, McCarthy FM, Ray DA, Baldwin BS, Burgess SC, Peterson DG.

PLoS One. 2012;7(1):e29850. doi: 10.1371/journal.pone.0029850. Epub 2012 Jan 10.


Characterization of the genome of bald cypress.

Liu W, Thummasuwan S, Sehgal SK, Chouvarine P, Peterson DG.

BMC Genomics. 2011 Nov 11;12:553. doi: 10.1186/1471-2164-12-553.


Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

Magbanua ZV, Ozkan S, Bartlett BD, Chouvarine P, Saski CA, Liston A, Cronn RC, Nelson CD, Peterson DG.

PLoS One. 2011 Jan 21;6(1):e16214. doi: 10.1371/journal.pone.0016214.


AgBase: supporting functional modeling in agricultural organisms.

McCarthy FM, Gresham CR, Buza TJ, Chouvarine P, Pillai LR, Kumar R, Ozkan S, Wang H, Manda P, Arick T, Bridges SM, Burgess SC.

Nucleic Acids Res. 2011 Jan;39(Database issue):D497-506. doi: 10.1093/nar/gkq1115. Epub 2010 Nov 12.


CotQuest: improved algorithm and software for nonlinear regression analysis of DNA reassociation kinetics data.

Bunge J, Chouvarine P, Peterson DG.

Anal Biochem. 2009 May 15;388(2):322-30. doi: 10.1016/j.ab.2009.03.007. Epub 2009 Mar 12.


An automated, high-throughput sequence read classification pipeline for preliminary genome characterization.

Chouvarine P, Saha S, Peterson DG.

Anal Biochem. 2008 Feb 1;373(1):78-87. Epub 2007 Aug 10.


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