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Items: 40


Comparing DNA, RNA and protein levels for measuring microbial dynamics in soil microcosms amended with nitrogen fertilizer.

Orellana LH, Hatt JK, Iyer R, Chourey K, Hettich RL, Spain JC, Yang WH, Chee-Sanford JC, Sanford RA, Löffler FE, Konstantinidis KT.

Sci Rep. 2019 Nov 26;9(1):17630. doi: 10.1038/s41598-019-53679-0.


Impact of Fixed Nitrogen Availability on Dehalococcoides mccartyi Reductive Dechlorination Activity.

Kaya D, Kjellerup BV, Chourey K, Hettich RL, Taggart DM, Löffler FE.

Environ Sci Technol. 2019 Dec 17;53(24):14548-14558. doi: 10.1021/acs.est.9b04463. Epub 2019 Nov 25.


Targeted detection of Dehalococcoides mccartyi microbial protein biomarkers as indicators of reductive dechlorination activity in contaminated groundwater.

Solis MIV, Abraham PE, Chourey K, Swift CM, Löffler FE, Hettich RL.

Sci Rep. 2019 Jul 22;9(1):10604. doi: 10.1038/s41598-019-46901-6.


Proteogenomics Reveals Novel Reductive Dehalogenases and Methyltransferases Expressed during Anaerobic Dichloromethane Metabolism.

Kleindienst S, Chourey K, Chen G, Murdoch RW, Higgins SA, Iyer R, Campagna SR, Mack EE, Seger ES, Hettich RL, Löffler FE.

Appl Environ Microbiol. 2019 Mar 6;85(6). pii: e02768-18. doi: 10.1128/AEM.02768-18. Print 2019 Mar 15.


Comparative Genomics and Proteomic Analysis of Assimilatory Sulfate Reduction Pathways in Anaerobic Methanotrophic Archaea.

Yu H, Susanti D, McGlynn SE, Skennerton CT, Chourey K, Iyer R, Scheller S, Tavormina PL, Hettich RL, Mukhopadhyay B, Orphan VJ.

Front Microbiol. 2018 Dec 3;9:2917. doi: 10.3389/fmicb.2018.02917. eCollection 2018.


Utilization of a Detergent-Based Method for Direct Microbial Cellular Lysis/Proteome Extraction from Soil Samples for Metaproteomics Studies.

Chourey K, Hettich RL.

Methods Mol Biol. 2018;1841:293-302. doi: 10.1007/978-1-4939-8695-8_20.


Characterization of Indole-3-acetic Acid Biosynthesis and the Effects of This Phytohormone on the Proteome of the Plant-Associated Microbe Pantoea sp. YR343.

Estenson K, Hurst GB, Standaert RF, Bible AN, Garcia D, Chourey K, Doktycz MJ, Morrell-Falvey JL.

J Proteome Res. 2018 Apr 6;17(4):1361-1374. doi: 10.1021/acs.jproteome.7b00708. Epub 2018 Feb 26.


Erratum for Skennerton et al., "Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea".

Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ.

mBio. 2017 Oct 3;8(5). pii: e01561-17. doi: 10.1128/mBio.01561-17. No abstract available.


Mechanisms of subzero growth in the cryophile Planococcus halocryophilus determined through proteomic analysis.

Raymond-Bouchard I, Chourey K, Altshuler I, Iyer R, Hettich RL, Whyte LG.

Environ Microbiol. 2017 Nov;19(11):4460-4479. doi: 10.1111/1462-2920.13893. Epub 2017 Oct 13.


Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Yang Y, Higgins SA, Yan J, Şimşir B, Chourey K, Iyer R, Hettich RL, Baldwin B, Ogles DM, Löffler FE.

ISME J. 2017 Dec;11(12):2767-2780. doi: 10.1038/ismej.2017.127. Epub 2017 Aug 15.


Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.

Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ.

mBio. 2017 Aug 1;8(4). pii: e00530-17. doi: 10.1128/mBio.00530-17. Erratum in: MBio. 2017 Oct 3;8(5):.


The protein and neutral lipid composition of lipid droplets isolated from the fission yeast, Schizosaccharomyces pombe.

Meyers A, Chourey K, Weiskittel TM, Pfiffner S, Dunlap JR, Hettich RL, Dalhaimer P.

J Microbiol. 2017 Feb;55(2):112-122. doi: 10.1007/s12275-017-6205-1. Epub 2017 Jan 26.


Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.

Bagnoud A, Chourey K, Hettich RL, de Bruijn I, Andersson AF, Leupin OX, Schwyn B, Bernier-Latmani R.

Nat Commun. 2016 Oct 14;7:12770. doi: 10.1038/ncomms12770.


Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum.

North JA, Sriram J, Chourey K, Ecker CD, Sharma R, Wildenthal JA, Hettich RL, Tabita FR.

mBio. 2016 Jul 12;7(4). pii: e00855-16. doi: 10.1128/mBio.00855-16.


Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities.

Marlow JJ, Skennerton CT, Li Z, Chourey K, Hettich RL, Pan C, Orphan VJ.

Front Microbiol. 2016 Apr 29;7:563. doi: 10.3389/fmicb.2016.00563. eCollection 2016.


An active atmospheric methane sink in high Arctic mineral cryosols.

Lau MC, Stackhouse BT, Layton AC, Chauhan A, Vishnivetskaya TA, Chourey K, Ronholm J, Mykytczuk NC, Bennett PC, Lamarche-Gagnon G, Burton N, Pollard WH, Omelon CR, Medvigy DM, Hettich RL, Pfiffner SM, Whyte LG, Onstott TC.

ISME J. 2015 Aug;9(8):1904. doi: 10.1038/ismej.2015.112. No abstract available.


An active atmospheric methane sink in high Arctic mineral cryosols.

Lau MC, Stackhouse BT, Layton AC, Chauhan A, Vishnivetskaya TA, Chourey K, Ronholm J, Mykytczuk NC, Bennett PC, Lamarche-Gagnon G, Burton N, Pollard WH, Omelon CR, Medvigy DM, Hettich RL, Pfiffner SM, Whyte LG, Onstott TC.

ISME J. 2015 Aug;9(8):1880-91. doi: 10.1038/ismej.2015.13. Epub 2015 Apr 14. Erratum in: ISME J. 2015 Aug;9(8):1904.


Strigolactone-regulated proteins revealed by iTRAQ-based quantitative proteomics in Arabidopsis.

Li Z, Czarnecki O, Chourey K, Yang J, Tuskan GA, Hurst GB, Pan C, Chen JG.

J Proteome Res. 2014 Mar 7;13(3):1359-72. doi: 10.1021/pr400925t. Epub 2014 Feb 24.


Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi.

Padilla-Crespo E, Yan J, Swift C, Wagner DD, Chourey K, Hettich RL, Ritalahti KM, Löffler FE.

Appl Environ Microbiol. 2014 Feb;80(3):808-18. doi: 10.1128/AEM.02927-13. Epub 2013 Nov 15.


Geochemical, metagenomic and metaproteomic insights into trace metal utilization by methane-oxidizing microbial consortia in sulphidic marine sediments.

Glass JB, Yu H, Steele JA, Dawson KS, Sun S, Chourey K, Pan C, Hettich RL, Orphan VJ.

Environ Microbiol. 2014 Jun;16(6):1592-611. doi: 10.1111/1462-2920.12314. Epub 2013 Nov 14.


Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site.

Chourey K, Nissen S, Vishnivetskaya T, Shah M, Pfiffner S, Hettich RL, Löffler FE.

Proteomics. 2013 Oct;13(18-19):2921-30. doi: 10.1002/pmic.201300155. Epub 2013 Aug 22.


Isolation and chemical analysis of nanoparticles from English ivy (Hedera helix L.).

Lenaghan SC, Burris JN, Chourey K, Huang Y, Xia L, Lady B, Sharma R, Pan C, LeJeune Z, Foister S, Hettich RL, Stewart CN Jr, Zhang M.

J R Soc Interface. 2013 Jul 24;10(87):20130392. doi: 10.1098/rsif.2013.0392. Print 2013 Oct 6.


Insights into the structure and metabolic function of microbes that shape pelagic iron-rich aggregates ("iron snow").

Lu S, Chourey K, Reiche M, Nietzsche S, Shah MB, Neu TR, Hettich RL, Küsel K.

Appl Environ Microbiol. 2013 Jul;79(14):4272-81. doi: 10.1128/AEM.00467-13. Epub 2013 May 3.


Metaproteomics: harnessing the power of high performance mass spectrometry to identify the suite of proteins that control metabolic activities in microbial communities.

Hettich RL, Pan C, Chourey K, Giannone RJ.

Anal Chem. 2013 May 7;85(9):4203-14. doi: 10.1021/ac303053e. Epub 2013 Mar 21. Review.


Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community.

Handley KM, VerBerkmoes NC, Steefel CI, Williams KH, Sharon I, Miller CS, Frischkorn KR, Chourey K, Thomas BC, Shah MB, Long PE, Hettich RL, Banfield JF.

ISME J. 2013 Apr;7(4):800-16. doi: 10.1038/ismej.2012.148. Epub 2012 Nov 29.


Comparative c-type cytochrome expression analysis in Shewanella oneidensis strain MR-1 and Anaeromyxobacter dehalogenans strain 2CP-C grown with soluble and insoluble oxidized metal electron acceptors.

Nissen S, Liu X, Chourey K, Hettich RL, Wagner DD, Pfiffner SM, Löffler FE.

Biochem Soc Trans. 2012 Dec 1;40(6):1204-10. doi: 10.1042/BST20120182.


Coupling a detergent lysis/cleanup methodology with intact protein fractionation for enhanced proteome characterization.

Sharma R, Dill BD, Chourey K, Shah M, VerBerkmoes NC, Hettich RL.

J Proteome Res. 2012 Dec 7;11(12):6008-18. doi: 10.1021/pr300709k. Epub 2012 Nov 19.


Microbial metaproteomics: identifying the repertoire of proteins that microorganisms use to compete and cooperate in complex environmental communities.

Hettich RL, Sharma R, Chourey K, Giannone RJ.

Curr Opin Microbiol. 2012 Jun;15(3):373-80. doi: 10.1016/j.mib.2012.04.008. Epub 2012 May 24. Review.


Systematic comparison of label-free, metabolic labeling, and isobaric chemical labeling for quantitative proteomics on LTQ Orbitrap Velos.

Li Z, Adams RM, Chourey K, Hurst GB, Hettich RL, Pan C.

J Proteome Res. 2012 Mar 2;11(3):1582-90. doi: 10.1021/pr200748h. Epub 2012 Feb 16.


Direct cellular lysis/protein extraction protocol for soil metaproteomics.

Chourey K, Jansson J, VerBerkmoes N, Shah M, Chavarria KL, Tom LM, Brodie EL, Hettich RL.

J Proteome Res. 2010 Dec 3;9(12):6615-22. doi: 10.1021/pr100787q. Epub 2010 Nov 15.


Proteomics reveals a core molecular response of Pseudomonas putida F1 to acute chromate challenge.

Thompson DK, Chourey K, Wickham GS, Thieman SB, VerBerkmoes NC, Zhang B, McCarthy AT, Rudisill MA, Shah M, Hettich RL.

BMC Genomics. 2010 May 19;11:311. doi: 10.1186/1471-2164-11-311.


Comparative temporal proteomics of a response regulator (SO2426)-deficient strain and wild-type Shewanella oneidensis MR-1 during chromate transformation.

Chourey K, Thompson MR, Shah M, Zhang B, Verberkmoes NC, Thompson DK, Hettich RL.

J Proteome Res. 2009 Jan;8(1):59-71. doi: 10.1021/pr800776d.


Experimental approach for deep proteome measurements from small-scale microbial biomass samples.

Thompson MR, Chourey K, Froelich JM, Erickson BK, VerBerkmoes NC, Hettich RL.

Anal Chem. 2008 Dec 15;80(24):9517-25. doi: 10.1021/ac801707s.


Transcriptome analysis reveals response regulator SO2426-mediated gene expression in Shewanella oneidensis MR-1 under chromate challenge.

Chourey K, Wei W, Wan XF, Thompson DK.

BMC Genomics. 2008 Aug 21;9:395. doi: 10.1186/1471-2164-9-395.


Dosage-dependent proteome response of Shewanella oneidensis MR-1 to acute chromate challenge.

Thompson MR, VerBerkmoes NC, Chourey K, Shah M, Thompson DK, Hettich RL.

J Proteome Res. 2007 May;6(5):1745-57. Epub 2007 Mar 27.


Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1.

Chourey K, Thompson MR, Morrell-Falvey J, Verberkmoes NC, Brown SD, Shah M, Zhou J, Doktycz M, Hettich RL, Thompson DK.

Appl Environ Microbiol. 2006 Sep;72(9):6331-44.


Molecular dynamics of the Shewanella oneidensis response to chromate stress.

Brown SD, Thompson MR, Verberkmoes NC, Chourey K, Shah M, Zhou J, Hettich RL, Thompson DK.

Mol Cell Proteomics. 2006 Jun;5(6):1054-71. Epub 2006 Mar 8.


Cellular response of Shewanella oneidensis to strontium stress.

Brown SD, Martin M, Deshpande S, Seal S, Huang K, Alm E, Yang Y, Wu L, Yan T, Liu X, Arkin A, Chourey K, Zhou J, Thompson DK.

Appl Environ Microbiol. 2006 Jan;72(1):890-900.


Quantitative comparison of mitotic spindles by confocal image analysis.

Price JR, Aykac D, Gleason SS, Chourey K, Liu Y.

J Biomed Opt. 2005 Jul-Aug;10(4):44012.

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