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Items: 4


The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions.

Wang Y, Song F, Zhang B, Zhang L, Xu J, Kuang D, Li D, Choudhary MNK, Li Y, Hu M, Hardison R, Wang T, Yue F.

Genome Biol. 2018 Oct 4;19(1):151. doi: 10.1186/s13059-018-1519-9.


Tissue-specific DNA methylation is conserved across human, mouse, and rat, and driven by primary sequence conservation.

Zhou J, Sears RL, Xing X, Zhang B, Li D, Rockweiler NB, Jang HS, Choudhary MNK, Lee HJ, Lowdon RF, Arand J, Tabers B, Gu CC, Cicero TJ, Wang T.

BMC Genomics. 2017 Sep 12;18(1):724. doi: 10.1186/s12864-017-4115-6.


Functional cis-regulatory modules encoded by mouse-specific endogenous retrovirus.

Sundaram V, Choudhary MN, Pehrsson E, Xing X, Fiore C, Pandey M, Maricque B, Udawatta M, Ngo D, Chen Y, Paguntalan A, Ray T, Hughes A, Cohen BA, Wang T.

Nat Commun. 2017 Mar 28;8:14550. doi: 10.1038/ncomms14550.


DoCM: a database of curated mutations in cancer.

Ainscough BJ, Griffith M, Coffman AC, Wagner AH, Kunisaki J, Choudhary MN, McMichael JF, Fulton RS, Wilson RK, Griffith OL, Mardis ER.

Nat Methods. 2016 Sep 29;13(10):806-7. doi: 10.1038/nmeth.4000. No abstract available.

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