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Items: 21

1.

Functional and molecular mechanism of intracellular pH regulation in human inducible pluripotent stem cells.

Chao SC, Wu GJ, Huang SF, Dai NT, Huang HK, Chou MF, Tsai YT, Lee SP, Loh SH.

World J Stem Cells. 2018 Dec 26;10(12):196-211. doi: 10.4252/wjsc.v10.i12.196.

2.

Opinion: Advocating for science progress as a human right.

Porsdam Mann S, Donders Y, Mitchell C, Bradley VJ, Chou MF, Mann M, Church G, Porsdam H.

Proc Natl Acad Sci U S A. 2018 Oct 23;115(43):10820-10823. doi: 10.1073/pnas.1816320115. No abstract available.

3.

Characterizing Protein Kinase Substrate Specificity Using the Proteomic Peptide Library (ProPeL) Approach.

Lubner JM, Balsbaugh JL, Church GM, Chou MF, Schwartz D.

Curr Protoc Chem Biol. 2018 Jun;10(2):e38. doi: 10.1002/cpch.38.

4.

An unbiased index to quantify participant's phenotypic contribution to an open-access cohort.

Chan Y, Tung M, Garruss AS, Zaranek SW, Chan YK, Lunshof JE, Zaranek AW, Ball MP, Chou MF, Lim ET, Church GM.

Sci Rep. 2017 Apr 7;7:46148. doi: 10.1038/srep46148.

5.

Cushing's syndrome mutant PKAL205R exhibits altered substrate specificity.

Lubner JM, Dodge-Kafka KL, Carlson CR, Church GM, Chou MF, Schwartz D.

FEBS Lett. 2017 Feb;591(3):459-467. doi: 10.1002/1873-3468.12562. Epub 2017 Feb 3.

6.

Harvard Personal Genome Project: lessons from participatory public research.

Ball MP, Bobe JR, Chou MF, Clegg T, Estep PW, Lunshof JE, Vandewege W, Zaranek A, Church GM.

Genome Med. 2014 Feb 28;6(2):10. doi: 10.1186/gm527.

7.

Emerging technologies in extracellular vesicle-based molecular diagnostics.

Jia S, Zocco D, Samuels ML, Chou MF, Chammas R, Skog J, Zarovni N, Momen-Heravi F, Kuo WP.

Expert Rev Mol Diagn. 2014 Apr;14(3):307-21. doi: 10.1586/14737159.2014.893828. Epub 2014 Feb 27. Review.

PMID:
24575799
8.

Menopausal symptoms and the menopausal rating scale among midlife chinese women in Macau, China.

Chou MF, Wun YT, Pang SM.

Women Health. 2014;54(2):115-26. doi: 10.1080/03630242.2013.871767.

PMID:
24417706
9.

pLogo: a probabilistic approach to visualizing sequence motifs.

O'Shea JP, Chou MF, Quader SA, Ryan JK, Church GM, Schwartz D.

Nat Methods. 2013 Dec;10(12):1211-2. doi: 10.1038/nmeth.2646. Epub 2013 Oct 6.

PMID:
24097270
10.

Using bacteria to determine protein kinase specificity and predict target substrates.

Chou MF, Prisic S, Lubner JM, Church GM, Husson RN, Schwartz D.

PLoS One. 2012;7(12):e52747. doi: 10.1371/journal.pone.0052747. Epub 2012 Dec 26.

11.

A public resource facilitating clinical use of genomes.

Ball MP, Thakuria JV, Zaranek AW, Clegg T, Rosenbaum AM, Wu X, Angrist M, Bhak J, Bobe J, Callow MJ, Cano C, Chou MF, Chung WK, Douglas SM, Estep PW, Gore A, Hulick P, Labarga A, Lee JH, Lunshof JE, Kim BC, Kim JI, Li Z, Murray MF, Nilsen GB, Peters BA, Raman AM, Rienhoff HY, Robasky K, Wheeler MT, Vandewege W, Vorhaus DB, Yang JL, Yang L, Aach J, Ashley EA, Drmanac R, Kim SJ, Li JB, Peshkin L, Seidman CE, Seo JS, Zhang K, Rehm HL, Church GM.

Proc Natl Acad Sci U S A. 2012 Jul 24;109(30):11920-7. doi: 10.1073/pnas.1201904109. Epub 2012 Jul 13.

12.

Using the scan-x Web site to predict protein post-translational modifications.

Chou MF, Schwartz D.

Curr Protoc Bioinformatics. 2011 Dec;Chapter 13:Unit 13.16.. doi: 10.1002/0471250953.bi1316s36.

PMID:
22161568
13.

Biological sequence motif discovery using motif-x.

Chou MF, Schwartz D.

Curr Protoc Bioinformatics. 2011 Sep;Chapter 13:Unit 13.15-24. doi: 10.1002/0471250953.bi1315s35.

PMID:
21901740
14.

Clinical assessment incorporating a personal genome.

Ashley EA, Butte AJ, Wheeler MT, Chen R, Klein TE, Dewey FE, Dudley JT, Ormond KE, Pavlovic A, Morgan AA, Pushkarev D, Neff NF, Hudgins L, Gong L, Hodges LM, Berlin DS, Thorn CF, Sangkuhl K, Hebert JM, Woon M, Sagreiya H, Whaley R, Knowles JW, Chou MF, Thakuria JV, Rosenbaum AM, Zaranek AW, Church GM, Greely HT, Quake SR, Altman RB.

Lancet. 2010 May 1;375(9725):1525-35. doi: 10.1016/S0140-6736(10)60452-7.

15.

Extensive phosphorylation with overlapping specificity by Mycobacterium tuberculosis serine/threonine protein kinases.

Prisic S, Dankwa S, Schwartz D, Chou MF, Locasale JW, Kang CM, Bemis G, Church GM, Steen H, Husson RN.

Proc Natl Acad Sci U S A. 2010 Apr 20;107(16):7521-6. doi: 10.1073/pnas.0913482107. Epub 2010 Apr 5.

16.

Predicting protein post-translational modifications using meta-analysis of proteome scale data sets.

Schwartz D, Chou MF, Church GM.

Mol Cell Proteomics. 2009 Feb;8(2):365-79. doi: 10.1074/mcp.M800332-MCP200. Epub 2008 Oct 28.

17.

Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries.

Chiang CW, Derti A, Schwartz D, Chou MF, Hirschhorn JN, Wu CT.

Genetics. 2008 Dec;180(4):2277-93. doi: 10.1534/genetics.108.096537. Epub 2008 Oct 28.

18.

Adaptive combinatorial design to explore large experimental spaces: approach and validation.

Lejay LV, Shasha DE, Palenchar PM, Kouranov AY, Cruikshank AA, Chou MF, Coruzzi GM.

Syst Biol (Stevenage). 2004 Dec;1(2):206-12.

PMID:
17051692
19.

Recruitment of Xenopus Scc2 and cohesin to chromatin requires the pre-replication complex.

Takahashi TS, Yiu P, Chou MF, Gygi S, Walter JC.

Nat Cell Biol. 2004 Oct;6(10):991-6. Epub 2004 Sep 26.

PMID:
15448702
20.

Using combinatorial design to study regulation by multiple input signals. A tool for parsimony in the post-genomics era.

Shasha DE, Kouranov AY, Lejay LV, Chou MF, Coruzzi GM.

Plant Physiol. 2001 Dec;127(4):1590-4. No abstract available.

21.

Hrs-2 regulates receptor-mediated endocytosis via interactions with Eps15.

Bean AJ, Davanger S, Chou MF, Gerhardt B, Tsujimoto S, Chang Y.

J Biol Chem. 2000 May 19;275(20):15271-8.

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