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Items: 16


Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications.

Chopyk J, Nasko DJ, Allard S, Bui A, Treangen T, Pop M, Mongodin EF, Sapkota AR.

Water Res. 2019 Oct 31;169:115250. doi: 10.1016/j.watres.2019.115250. [Epub ahead of print]


The Bacterial Communities of Little Cigars and Cigarillos Are Dynamic Over Time and Varying Storage Conditions.

Smyth EM, Chattopadhyay S, Babik K, Reid M, Chopyk J, Malayil L, Kulkarni P, Hittle LE, Clark PI, Sapkota AR, Mongodin EF.

Front Microbiol. 2019 Oct 25;10:2371. doi: 10.3389/fmicb.2019.02371. eCollection 2019.


Current State of and Future Opportunities for Prediction in Microbiome Research: Report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019.

Sakowski E, Uritskiy G, Cooper R, Gomes M, McLaren MR, Meisel JS, Mickol RL, Mintz CD, Mongodin EF, Pop M, Rahman MA, Sanchez A, Timp W, Vela JD, Wolz CM, Zackular JP, Chopyk J, Commichaux S, Davis M, Dluzen D, Ganesan SM, Haruna M, Nasko D, Regan MJ, Sarria S, Shah N, Stacy B, Taylor D, DiRuggiero J, Preheim SP.

mSystems. 2019 Oct 8;4(5). pii: e00392-19. doi: 10.1128/mSystems.00392-19.


The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None.

Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT.

Front Microbiol. 2019 Sep 6;10:2061. doi: 10.3389/fmicb.2019.02061. eCollection 2019.


Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome.

Jung CE, Chopyk J, Shin JH, Lukacz ES, Brubaker L, Schwanemann LK, Knight R, Wolfe AJ, Pride DT.

Sci Rep. 2019 Sep 16;9(1):13409. doi: 10.1038/s41598-019-49823-5.


Zero-valent iron sand filtration reduces concentrations of virus-like particles and modifies virome community composition in reclaimed water used for agricultural irrigation.

Chopyk J, Kulkarni P, Nasko DJ, Bradshaw R, Kniel KE, Chiu P, Sharma M, Sapkota AR.

BMC Res Notes. 2019 Apr 11;12(1):223. doi: 10.1186/s13104-019-4251-y.


Creek to Table: Tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops.

Allard SM, Callahan MT, Bui A, Ferelli AMC, Chopyk J, Chattopadhyay S, Mongodin EF, Micallef SA, Sapkota AR.

Sci Total Environ. 2019 May 20;666:461-471. doi: 10.1016/j.scitotenv.2019.02.179. Epub 2019 Feb 12.


Family A DNA Polymerase Phylogeny Uncovers Diversity and Replication Gene Organization in the Virioplankton.

Nasko DJ, Chopyk J, Sakowski EG, Ferrell BD, Polson SW, Wommack KE.

Front Microbiol. 2018 Dec 14;9:3053. doi: 10.3389/fmicb.2018.03053. eCollection 2018.


Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018.

Meisel JS, Nasko DJ, Brubach B, Cepeda-Espinoza V, Chopyk J, Corrada-Bravo H, Fedarko M, Ghurye J, Javkar K, Olson ND, Shah N, Allard SM, Bazinet AL, Bergman NH, Brown A, Caporaso JG, Conlan S, DiRuggiero J, Forry SP, Hasan NA, Kralj J, Luethy PM, Milton DK, Ondov BD, Preheim S, Ratnayake S, Rogers SM, Rosovitz MJ, Sakowski EG, Schliebs NO, Sommer DD, Ternus KL, Uritskiy G, Zhang SX, Pop M, Treangen TJ.

Microbiome. 2018 Nov 5;6(1):197. doi: 10.1186/s40168-018-0582-5.


Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations.

Chopyk J, Allard S, Nasko DJ, Bui A, Mongodin EF, Sapkota AR.

Front Microbiol. 2018 Apr 24;9:792. doi: 10.3389/fmicb.2018.00792. eCollection 2018.


Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions.

Chopyk J, Chattopadhyay S, Kulkarni P, Smyth EM, Hittle LE, Paulson JN, Pop M, Buehler SS, Clark PI, Mongodin EF, Sapkota AR.

Front Microbiol. 2017 Mar 7;8:358. doi: 10.3389/fmicb.2017.00358. eCollection 2017.


Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens.

Chopyk J, Chattopadhyay S, Kulkarni P, Claye E, Babik KR, Reid MC, Smyth EM, Hittle LE, Paulson JN, Cruz-Cano R, Pop M, Buehler SS, Clark PI, Sapkota AR, Mongodin EF.

Microbiome. 2017 Feb 15;5(1):22. doi: 10.1186/s40168-017-0235-0.


Presence of pathogenic Escherichia coli is correlated with bacterial community diversity and composition on pre-harvest cattle hides.

Chopyk J, Moore RM, DiSpirito Z, Stromberg ZR, Lewis GL, Renter DG, Cernicchiaro N, Moxley RA, Wommack KE.

Microbiome. 2016 Mar 22;4:9. doi: 10.1186/s40168-016-0155-4.


Counts and sequences, observations that continue to change our understanding of viruses in nature.

Wommack KE, Nasko DJ, Chopyk J, Sakowski EG.

J Microbiol. 2015 Mar;53(3):181-92. doi: 10.1007/s12275-015-5068-6. Epub 2015 Mar 3. Review.


Obstructing endobronchial fibrous histiocytoma: potential for lung salvage.

Tagge E, Yunis E, Chopyk J, Wiener E.

J Pediatr Surg. 1991 Sep;26(9):1067-9.


Continuous alfentanil infusion in pediatric patients undergoing general anesthesia for complete oral restoration.

Davis PJ, Chopyk JB, Nazif M, Cook DR.

J Clin Anesth. 1991 Mar-Apr;3(2):125-30.


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