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Items: 15

1.

In Situ Biomineralization and Particle Deposition Distinctively Mediate Biofilm Susceptibility to Chlorine.

Li X, Chopp DL, Russin WA, Brannon PT, Parsek MR, Packman AI.

Appl Environ Microbiol. 2016 May 2;82(10):2886-92. doi: 10.1128/AEM.03954-15. Print 2016 May 15.

2.

Spatial patterns of carbonate biomineralization in biofilms.

Li X, Chopp DL, Russin WA, Brannon PT, Parsek MR, Packman AI.

Appl Environ Microbiol. 2015 Nov;81(21):7403-10. doi: 10.1128/AEM.01585-15. Epub 2015 Aug 14.

3.

Methods for characterizing the co-development of biofilm and habitat heterogeneity.

Li X, Song JL, Culotti A, Zhang W, Chopp DL, Lu N, Packman AI.

J Vis Exp. 2015 Mar 11;(97). doi: 10.3791/52602.

4.

Modeling the impact of interspecies competition on performance of a microbial fuel cell.

Merkey BV, Chopp DL.

Bull Math Biol. 2014 Jun;76(6):1429-53. doi: 10.1007/s11538-014-9968-0. Epub 2014 May 14.

PMID:
24824851
5.

The extracellular matrix protects Pseudomonas aeruginosa biofilms by limiting the penetration of tobramycin.

Tseng BS, Zhang W, Harrison JJ, Quach TP, Song JL, Penterman J, Singh PK, Chopp DL, Packman AI, Parsek MR.

Environ Microbiol. 2013 Oct;15(10):2865-78. doi: 10.1111/1462-2920.12155. Epub 2013 Jun 10.

6.

The performance of a microbial fuel cell depends strongly on anode geometry: a multidimensional modeling study.

Merkey BV, Chopp DL.

Bull Math Biol. 2012 Apr;74(4):834-57. doi: 10.1007/s11538-011-9690-0. Epub 2011 Oct 20.

PMID:
22015479
7.

The influence of fluid flow on modeling quorum sensing in bacterial biofilms.

Vaughan BL Jr, Smith BG, Chopp DL.

Bull Math Biol. 2010 Jul;72(5):1143-65. doi: 10.1007/s11538-009-9485-8. Epub 2010 Feb 10.

PMID:
20146020
8.

Modeling how soluble microbial products (SMP) support heterotrophic bacteria in autotroph-based biofilms.

Merkey BV, Rittmann BE, Chopp DL.

J Theor Biol. 2009 Aug 21;259(4):670-83. doi: 10.1016/j.jtbi.2009.05.010. Epub 2009 May 27.

PMID:
19481097
9.

A two-dimensional continuum model of biofilm growth incorporating fluid flow and shear stress based detachment.

Duddu R, Chopp DL, Moran B.

Biotechnol Bioeng. 2009 May 1;103(1):92-104. doi: 10.1002/bit.22233.

PMID:
19213021
10.

Compartmental neural simulations with spatial adaptivity.

Rempe MJ, Spruston N, Kath WL, Chopp DL.

J Comput Neurosci. 2008 Dec;25(3):465-80. doi: 10.1007/s10827-008-0089-3. Epub 2008 May 6.

11.

Influence of the hydrodynamic environment on quorum sensing in Pseudomonas aeruginosa biofilms.

Kirisits MJ, Margolis JJ, Purevdorj-Gage BL, Vaughan B, Chopp DL, Stoodley P, Parsek MR.

J Bacteriol. 2007 Nov;189(22):8357-60. Epub 2007 Aug 17.

12.

The impact of quorum sensing and swarming motility on Pseudomonas aeruginosa biofilm formation is nutritionally conditional.

Shrout JD, Chopp DL, Just CL, Hentzer M, Givskov M, Parsek MR.

Mol Microbiol. 2006 Dec;62(5):1264-77. Epub 2006 Oct 24.

13.

The dependence of quorum sensing on the depth of a growing biofilm.

Chopp DL, Kirisits MJ, Moran B, Parsek MR.

Bull Math Biol. 2003 Nov;65(6):1053-79.

PMID:
14607288
14.

A mathematical model of quorum sensing in a growing bacterial biofilm.

Chopp DL, Kirisits MJ, Moran B, Parsek MR.

J Ind Microbiol Biotechnol. 2002 Dec;29(6):339-46.

PMID:
12483476
15.

Replacing iterative algorithms with single-pass algorithms.

Chopp DL.

Proc Natl Acad Sci U S A. 2001 Sep 25;98(20):10992-3. Review. No abstract available.

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